GO Enrichment Analysis of Co-expressed Genes with
AT1G03290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006592: ornithine biosynthetic process | 0.00E+00 |
| 2 | GO:0010051: xylem and phloem pattern formation | 1.34E-05 |
| 3 | GO:0044376: RNA polymerase II complex import to nucleus | 7.23E-05 |
| 4 | GO:0010265: SCF complex assembly | 7.23E-05 |
| 5 | GO:0006144: purine nucleobase metabolic process | 7.23E-05 |
| 6 | GO:0019628: urate catabolic process | 7.23E-05 |
| 7 | GO:1990022: RNA polymerase III complex localization to nucleus | 7.23E-05 |
| 8 | GO:0051788: response to misfolded protein | 1.74E-04 |
| 9 | GO:0006101: citrate metabolic process | 1.74E-04 |
| 10 | GO:0061158: 3'-UTR-mediated mRNA destabilization | 2.93E-04 |
| 11 | GO:0006517: protein deglycosylation | 2.93E-04 |
| 12 | GO:0006516: glycoprotein catabolic process | 4.23E-04 |
| 13 | GO:0009647: skotomorphogenesis | 4.23E-04 |
| 14 | GO:0001676: long-chain fatty acid metabolic process | 4.23E-04 |
| 15 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 4.23E-04 |
| 16 | GO:0000187: activation of MAPK activity | 4.23E-04 |
| 17 | GO:0010193: response to ozone | 5.15E-04 |
| 18 | GO:0071219: cellular response to molecule of bacterial origin | 5.65E-04 |
| 19 | GO:0010188: response to microbial phytotoxin | 5.65E-04 |
| 20 | GO:0080142: regulation of salicylic acid biosynthetic process | 5.65E-04 |
| 21 | GO:0036065: fucosylation | 7.14E-04 |
| 22 | GO:0006564: L-serine biosynthetic process | 7.14E-04 |
| 23 | GO:0006097: glyoxylate cycle | 7.14E-04 |
| 24 | GO:0060918: auxin transport | 8.73E-04 |
| 25 | GO:0043248: proteasome assembly | 8.73E-04 |
| 26 | GO:0009612: response to mechanical stimulus | 1.04E-03 |
| 27 | GO:0006694: steroid biosynthetic process | 1.04E-03 |
| 28 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 1.21E-03 |
| 29 | GO:0010044: response to aluminum ion | 1.21E-03 |
| 30 | GO:0048528: post-embryonic root development | 1.21E-03 |
| 31 | GO:0009819: drought recovery | 1.40E-03 |
| 32 | GO:0031540: regulation of anthocyanin biosynthetic process | 1.40E-03 |
| 33 | GO:0006102: isocitrate metabolic process | 1.40E-03 |
| 34 | GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline | 1.40E-03 |
| 35 | GO:0006526: arginine biosynthetic process | 1.59E-03 |
| 36 | GO:0006886: intracellular protein transport | 1.79E-03 |
| 37 | GO:0010112: regulation of systemic acquired resistance | 1.80E-03 |
| 38 | GO:0009060: aerobic respiration | 1.80E-03 |
| 39 | GO:1900426: positive regulation of defense response to bacterium | 2.01E-03 |
| 40 | GO:0043067: regulation of programmed cell death | 2.01E-03 |
| 41 | GO:0010072: primary shoot apical meristem specification | 2.46E-03 |
| 42 | GO:0016485: protein processing | 2.46E-03 |
| 43 | GO:0009626: plant-type hypersensitive response | 2.54E-03 |
| 44 | GO:0009733: response to auxin | 2.87E-03 |
| 45 | GO:0006829: zinc II ion transport | 2.94E-03 |
| 46 | GO:0090351: seedling development | 3.44E-03 |
| 47 | GO:0009969: xyloglucan biosynthetic process | 3.44E-03 |
| 48 | GO:0007031: peroxisome organization | 3.44E-03 |
| 49 | GO:0034976: response to endoplasmic reticulum stress | 3.71E-03 |
| 50 | GO:0009790: embryo development | 4.16E-03 |
| 51 | GO:0009695: jasmonic acid biosynthetic process | 4.26E-03 |
| 52 | GO:0010073: meristem maintenance | 4.26E-03 |
| 53 | GO:0031408: oxylipin biosynthetic process | 4.54E-03 |
| 54 | GO:0015992: proton transport | 4.54E-03 |
| 55 | GO:0009814: defense response, incompatible interaction | 4.83E-03 |
| 56 | GO:0030433: ubiquitin-dependent ERAD pathway | 4.83E-03 |
| 57 | GO:0080092: regulation of pollen tube growth | 4.83E-03 |
| 58 | GO:0042147: retrograde transport, endosome to Golgi | 5.74E-03 |
| 59 | GO:0009617: response to bacterium | 5.86E-03 |
| 60 | GO:0048825: cotyledon development | 7.04E-03 |
| 61 | GO:0006623: protein targeting to vacuole | 7.04E-03 |
| 62 | GO:0010183: pollen tube guidance | 7.04E-03 |
| 63 | GO:0002229: defense response to oomycetes | 7.38E-03 |
| 64 | GO:0030163: protein catabolic process | 8.07E-03 |
| 65 | GO:0006914: autophagy | 8.43E-03 |
| 66 | GO:0016579: protein deubiquitination | 9.16E-03 |
| 67 | GO:0051607: defense response to virus | 9.16E-03 |
| 68 | GO:0016126: sterol biosynthetic process | 9.54E-03 |
| 69 | GO:0016192: vesicle-mediated transport | 9.91E-03 |
| 70 | GO:0006950: response to stress | 1.07E-02 |
| 71 | GO:0042742: defense response to bacterium | 1.13E-02 |
| 72 | GO:0045454: cell redox homeostasis | 1.13E-02 |
| 73 | GO:0010311: lateral root formation | 1.19E-02 |
| 74 | GO:0009832: plant-type cell wall biogenesis | 1.19E-02 |
| 75 | GO:0048767: root hair elongation | 1.19E-02 |
| 76 | GO:0009631: cold acclimation | 1.27E-02 |
| 77 | GO:0010043: response to zinc ion | 1.27E-02 |
| 78 | GO:0006508: proteolysis | 1.32E-02 |
| 79 | GO:0009867: jasmonic acid mediated signaling pathway | 1.36E-02 |
| 80 | GO:0006099: tricarboxylic acid cycle | 1.40E-02 |
| 81 | GO:0030001: metal ion transport | 1.49E-02 |
| 82 | GO:0009651: response to salt stress | 1.51E-02 |
| 83 | GO:0015031: protein transport | 1.54E-02 |
| 84 | GO:0006631: fatty acid metabolic process | 1.54E-02 |
| 85 | GO:0009926: auxin polar transport | 1.63E-02 |
| 86 | GO:0051707: response to other organism | 1.63E-02 |
| 87 | GO:0000209: protein polyubiquitination | 1.67E-02 |
| 88 | GO:0000165: MAPK cascade | 1.86E-02 |
| 89 | GO:0006812: cation transport | 1.91E-02 |
| 90 | GO:0046686: response to cadmium ion | 1.99E-02 |
| 91 | GO:0006486: protein glycosylation | 2.01E-02 |
| 92 | GO:0009736: cytokinin-activated signaling pathway | 2.01E-02 |
| 93 | GO:0010224: response to UV-B | 2.06E-02 |
| 94 | GO:0006096: glycolytic process | 2.26E-02 |
| 95 | GO:0009735: response to cytokinin | 2.26E-02 |
| 96 | GO:0048316: seed development | 2.31E-02 |
| 97 | GO:0055085: transmembrane transport | 3.14E-02 |
| 98 | GO:0006511: ubiquitin-dependent protein catabolic process | 3.36E-02 |
| 99 | GO:0010228: vegetative to reproductive phase transition of meristem | 3.94E-02 |
| 100 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.13E-02 |
| 101 | GO:0006470: protein dephosphorylation | 4.19E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004846: urate oxidase activity | 0.00E+00 |
| 2 | GO:0008777: acetylornithine deacetylase activity | 0.00E+00 |
| 3 | GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity | 0.00E+00 |
| 4 | GO:0031593: polyubiquitin binding | 1.33E-05 |
| 5 | GO:0034450: ubiquitin-ubiquitin ligase activity | 7.23E-05 |
| 6 | GO:0004321: fatty-acyl-CoA synthase activity | 7.23E-05 |
| 7 | GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity | 1.74E-04 |
| 8 | GO:0004617: phosphoglycerate dehydrogenase activity | 1.74E-04 |
| 9 | GO:0003994: aconitate hydratase activity | 1.74E-04 |
| 10 | GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity | 2.93E-04 |
| 11 | GO:0001085: RNA polymerase II transcription factor binding | 4.18E-04 |
| 12 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 4.23E-04 |
| 13 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 4.23E-04 |
| 14 | GO:0004576: oligosaccharyl transferase activity | 5.65E-04 |
| 15 | GO:0015368: calcium:cation antiporter activity | 5.65E-04 |
| 16 | GO:0015369: calcium:proton antiporter activity | 5.65E-04 |
| 17 | GO:0008237: metallopeptidase activity | 6.57E-04 |
| 18 | GO:0004040: amidase activity | 7.14E-04 |
| 19 | GO:0102391: decanoate--CoA ligase activity | 1.04E-03 |
| 20 | GO:0004656: procollagen-proline 4-dioxygenase activity | 1.04E-03 |
| 21 | GO:0004222: metalloendopeptidase activity | 1.04E-03 |
| 22 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 1.08E-03 |
| 23 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.21E-03 |
| 24 | GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity | 1.21E-03 |
| 25 | GO:0004427: inorganic diphosphatase activity | 1.21E-03 |
| 26 | GO:0015491: cation:cation antiporter activity | 1.40E-03 |
| 27 | GO:0004708: MAP kinase kinase activity | 1.40E-03 |
| 28 | GO:0008417: fucosyltransferase activity | 1.80E-03 |
| 29 | GO:0016207: 4-coumarate-CoA ligase activity | 1.80E-03 |
| 30 | GO:0004521: endoribonuclease activity | 2.70E-03 |
| 31 | GO:0004190: aspartic-type endopeptidase activity | 3.44E-03 |
| 32 | GO:0031418: L-ascorbic acid binding | 3.98E-03 |
| 33 | GO:0043130: ubiquitin binding | 3.98E-03 |
| 34 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 4.06E-03 |
| 35 | GO:0004176: ATP-dependent peptidase activity | 4.54E-03 |
| 36 | GO:0000166: nucleotide binding | 4.63E-03 |
| 37 | GO:0003756: protein disulfide isomerase activity | 5.43E-03 |
| 38 | GO:0003727: single-stranded RNA binding | 5.43E-03 |
| 39 | GO:0047134: protein-disulfide reductase activity | 5.74E-03 |
| 40 | GO:0046873: metal ion transmembrane transporter activity | 6.38E-03 |
| 41 | GO:0004791: thioredoxin-disulfide reductase activity | 6.70E-03 |
| 42 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 7.38E-03 |
| 43 | GO:0003682: chromatin binding | 8.03E-03 |
| 44 | GO:0043531: ADP binding | 8.32E-03 |
| 45 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 8.79E-03 |
| 46 | GO:0016597: amino acid binding | 9.16E-03 |
| 47 | GO:0004806: triglyceride lipase activity | 1.07E-02 |
| 48 | GO:0005524: ATP binding | 1.29E-02 |
| 49 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 1.36E-02 |
| 50 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.49E-02 |
| 51 | GO:0051287: NAD binding | 1.86E-02 |
| 52 | GO:0008270: zinc ion binding | 2.16E-02 |
| 53 | GO:0016874: ligase activity | 2.47E-02 |
| 54 | GO:0016746: transferase activity, transferring acyl groups | 2.64E-02 |
| 55 | GO:0005515: protein binding | 2.84E-02 |
| 56 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.09E-02 |
| 57 | GO:0008565: protein transporter activity | 3.44E-02 |
| 58 | GO:0005516: calmodulin binding | 3.72E-02 |
| 59 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 4.52E-02 |
| 60 | GO:0005509: calcium ion binding | 4.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000327: lytic vacuole within protein storage vacuole | 0.00E+00 |
| 2 | GO:0005829: cytosol | 6.49E-06 |
| 3 | GO:0005774: vacuolar membrane | 7.71E-06 |
| 4 | GO:0045254: pyruvate dehydrogenase complex | 1.74E-04 |
| 5 | GO:0030124: AP-4 adaptor complex | 2.93E-04 |
| 6 | GO:0046861: glyoxysomal membrane | 2.93E-04 |
| 7 | GO:0005776: autophagosome | 5.65E-04 |
| 8 | GO:0005667: transcription factor complex | 8.15E-04 |
| 9 | GO:0030904: retromer complex | 8.73E-04 |
| 10 | GO:0030131: clathrin adaptor complex | 1.40E-03 |
| 11 | GO:0000326: protein storage vacuole | 1.59E-03 |
| 12 | GO:0009514: glyoxysome | 1.59E-03 |
| 13 | GO:0005802: trans-Golgi network | 1.69E-03 |
| 14 | GO:0030125: clathrin vesicle coat | 2.23E-03 |
| 15 | GO:0017119: Golgi transport complex | 2.23E-03 |
| 16 | GO:0008541: proteasome regulatory particle, lid subcomplex | 2.46E-03 |
| 17 | GO:0005773: vacuole | 2.66E-03 |
| 18 | GO:0005750: mitochondrial respiratory chain complex III | 3.19E-03 |
| 19 | GO:0005794: Golgi apparatus | 3.75E-03 |
| 20 | GO:0005758: mitochondrial intermembrane space | 3.98E-03 |
| 21 | GO:0005759: mitochondrial matrix | 4.47E-03 |
| 22 | GO:0005741: mitochondrial outer membrane | 4.54E-03 |
| 23 | GO:0005905: clathrin-coated pit | 4.54E-03 |
| 24 | GO:0005783: endoplasmic reticulum | 4.56E-03 |
| 25 | GO:0031410: cytoplasmic vesicle | 4.83E-03 |
| 26 | GO:0005777: peroxisome | 5.52E-03 |
| 27 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 8.32E-03 |
| 28 | GO:0032580: Golgi cisterna membrane | 8.43E-03 |
| 29 | GO:0005768: endosome | 9.92E-03 |
| 30 | GO:0005788: endoplasmic reticulum lumen | 9.92E-03 |
| 31 | GO:0000151: ubiquitin ligase complex | 1.15E-02 |
| 32 | GO:0000325: plant-type vacuole | 1.27E-02 |
| 33 | GO:0005743: mitochondrial inner membrane | 1.29E-02 |
| 34 | GO:0031902: late endosome membrane | 1.54E-02 |
| 35 | GO:0005789: endoplasmic reticulum membrane | 1.94E-02 |
| 36 | GO:0000502: proteasome complex | 2.01E-02 |
| 37 | GO:0009543: chloroplast thylakoid lumen | 3.03E-02 |
| 38 | GO:0005623: cell | 3.09E-02 |
| 39 | GO:0009705: plant-type vacuole membrane | 3.81E-02 |
| 40 | GO:0009506: plasmodesma | 4.28E-02 |