co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G02500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006858: extracellular transport	0.00E+00
2	GO:0071731: response to nitric oxide	0.00E+00
3	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
4	GO:0006413: translational initiation	7.48E-06
5	GO:0046686: response to cadmium ion	2.08E-05
6	GO:0043609: regulation of carbon utilization	3.50E-05
7	GO:0002143: tRNA wobble position uridine thiolation	3.50E-05
8	GO:0006096: glycolytic process	6.16E-05
9	GO:0031538: negative regulation of anthocyanin metabolic process	8.78E-05
10	GO:0009805: coumarin biosynthetic process	8.78E-05
11	GO:0034470: ncRNA processing	8.78E-05
12	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	8.78E-05
13	GO:0080009: mRNA methylation	8.78E-05
14	GO:0045039: protein import into mitochondrial inner membrane	1.52E-04
15	GO:0009735: response to cytokinin	1.60E-04
16	GO:2000114: regulation of establishment of cell polarity	2.25E-04
17	GO:0071329: cellular response to sucrose stimulus	2.25E-04
18	GO:0072583: clathrin-dependent endocytosis	2.25E-04
19	GO:0043967: histone H4 acetylation	2.25E-04
20	GO:0051205: protein insertion into membrane	3.05E-04
21	GO:0000460: maturation of 5.8S rRNA	3.05E-04
22	GO:0006414: translational elongation	3.58E-04
23	GO:0006461: protein complex assembly	3.89E-04
24	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	4.78E-04
25	GO:0000470: maturation of LSU-rRNA	4.78E-04
26	GO:0043248: proteasome assembly	4.78E-04
27	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	4.78E-04
28	GO:0000911: cytokinesis by cell plate formation	5.70E-04
29	GO:0043966: histone H3 acetylation	5.70E-04
30	GO:0006368: transcription elongation from RNA polymerase II promoter	6.66E-04
31	GO:0010928: regulation of auxin mediated signaling pathway	7.68E-04
32	GO:0035265: organ growth	7.68E-04
33	GO:0048766: root hair initiation	7.68E-04
34	GO:0006002: fructose 6-phosphate metabolic process	8.71E-04
35	GO:0022900: electron transport chain	8.71E-04
36	GO:2000024: regulation of leaf development	9.78E-04
37	GO:0009553: embryo sac development	1.12E-03
38	GO:0010162: seed dormancy process	1.20E-03
39	GO:0006352: DNA-templated transcription, initiation	1.32E-03
40	GO:0000266: mitochondrial fission	1.44E-03
41	GO:0000027: ribosomal large subunit assembly	2.12E-03
42	GO:0009944: polarity specification of adaxial/abaxial axis	2.12E-03
43	GO:0007005: mitochondrion organization	2.56E-03
44	GO:0009294: DNA mediated transformation	2.71E-03
45	GO:0010091: trichome branching	2.87E-03
46	GO:0008284: positive regulation of cell proliferation	3.03E-03
47	GO:0042254: ribosome biogenesis	3.04E-03
48	GO:0010501: RNA secondary structure unwinding	3.20E-03
49	GO:0010051: xylem and phloem pattern formation	3.20E-03
50	GO:0009651: response to salt stress	3.56E-03
51	GO:0030163: protein catabolic process	4.24E-03
52	GO:0006904: vesicle docking involved in exocytosis	4.60E-03
53	GO:0016049: cell growth	5.78E-03
54	GO:0009631: cold acclimation	6.61E-03
55	GO:0048527: lateral root development	6.61E-03
56	GO:0006839: mitochondrial transport	7.72E-03
57	GO:0006887: exocytosis	7.95E-03
58	GO:0006897: endocytosis	7.95E-03
59	GO:0009640: photomorphogenesis	8.41E-03
60	GO:0008283: cell proliferation	8.41E-03
61	GO:0000154: rRNA modification	9.12E-03
62	GO:0009809: lignin biosynthetic process	1.04E-02
63	GO:0006364: rRNA processing	1.04E-02
64	GO:0009790: embryo development	1.74E-02
65	GO:0007166: cell surface receptor signaling pathway	2.15E-02
66	GO:0010468: regulation of gene expression	2.22E-02
67	GO:0009723: response to ethylene	2.96E-02
68	GO:0015979: photosynthesis	3.42E-02
69	GO:0045892: negative regulation of transcription, DNA-templated	3.58E-02
70	GO:0032259: methylation	3.98E-02
71	GO:0006397: mRNA processing	4.24E-02
72	GO:0008152: metabolic process	4.41E-02
73	GO:0009793: embryo development ending in seed dormancy	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0061604: molybdopterin-synthase sulfurtransferase activity	0.00E+00
2	GO:0061605: molybdopterin-synthase adenylyltransferase activity	0.00E+00
3	GO:0003746: translation elongation factor activity	3.54E-07
4	GO:0003743: translation initiation factor activity	1.20E-05
5	GO:0030955: potassium ion binding	2.19E-05
6	GO:0004743: pyruvate kinase activity	2.19E-05
7	GO:0030371: translation repressor activity	3.50E-05
8	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	3.50E-05
9	GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H	3.50E-05
10	GO:0043021: ribonucleoprotein complex binding	8.78E-05
11	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	1.52E-04
12	GO:0042409: caffeoyl-CoA O-methyltransferase activity	1.52E-04
13	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	1.52E-04
14	GO:0003729: mRNA binding	1.71E-04
15	GO:0004792: thiosulfate sulfurtransferase activity	2.25E-04
16	GO:0000993: RNA polymerase II core binding	3.05E-04
17	GO:0008641: small protein activating enzyme activity	3.89E-04
18	GO:0003872: 6-phosphofructokinase activity	6.66E-04
19	GO:0030515: snoRNA binding	6.66E-04
20	GO:0003924: GTPase activity	6.94E-04
21	GO:0003723: RNA binding	8.43E-04
22	GO:0008135: translation factor activity, RNA binding	8.71E-04
23	GO:0008171: O-methyltransferase activity	1.20E-03
24	GO:0008026: ATP-dependent helicase activity	1.21E-03
25	GO:0000166: nucleotide binding	1.40E-03
26	GO:0015114: phosphate ion transmembrane transporter activity	1.57E-03
27	GO:0004407: histone deacetylase activity	2.12E-03
28	GO:0043424: protein histidine kinase binding	2.26E-03
29	GO:0005525: GTP binding	2.63E-03
30	GO:0000287: magnesium ion binding	2.93E-03
31	GO:0004402: histone acetyltransferase activity	3.20E-03
32	GO:0030276: clathrin binding	3.36E-03
33	GO:0004004: ATP-dependent RNA helicase activity	5.58E-03
34	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	5.78E-03
35	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.99E-03
36	GO:0050897: cobalt ion binding	6.61E-03
37	GO:0005198: structural molecule activity	9.12E-03
38	GO:0005515: protein binding	1.08E-02
39	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.25E-02
40	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.25E-02
41	GO:0051082: unfolded protein binding	1.33E-02
42	GO:0004386: helicase activity	1.41E-02
43	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.86E-02
44	GO:0008017: microtubule binding	2.02E-02
45	GO:0008194: UDP-glycosyltransferase activity	2.12E-02
46	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.32E-02
47	GO:0005524: ATP binding	3.38E-02

Rank	GO Term	Adjusted P value
1	GO:0036396: MIS complex	0.00E+00
2	GO:0005730: nucleolus	5.86E-09
3	GO:0005829: cytosol	2.80E-07
4	GO:0005774: vacuolar membrane	1.99E-05
5	GO:0005618: cell wall	2.99E-05
6	GO:0005852: eukaryotic translation initiation factor 3 complex	3.20E-05
7	GO:0008023: transcription elongation factor complex	3.50E-05
8	GO:0045334: clathrin-coated endocytic vesicle	3.50E-05
9	GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	3.50E-05
10	GO:0070545: PeBoW complex	8.78E-05
11	GO:0009506: plasmodesma	1.54E-04
12	GO:0070062: extracellular exosome	2.25E-04
13	GO:0033588: Elongator holoenzyme complex	2.25E-04
14	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.64E-04
15	GO:0031428: box C/D snoRNP complex	4.78E-04
16	GO:0031597: cytosolic proteasome complex	5.70E-04
17	GO:0030687: preribosome, large subunit precursor	6.66E-04
18	GO:0000123: histone acetyltransferase complex	6.66E-04
19	GO:0008180: COP9 signalosome	9.78E-04
20	GO:0005834: heterotrimeric G-protein complex	1.02E-03
21	GO:0008541: proteasome regulatory particle, lid subcomplex	1.32E-03
22	GO:0005654: nucleoplasm	1.39E-03
23	GO:0032040: small-subunit processome	1.44E-03
24	GO:0031307: integral component of mitochondrial outer membrane	1.44E-03
25	GO:0005737: cytoplasm	1.96E-03
26	GO:0005741: mitochondrial outer membrane	2.41E-03
27	GO:0009504: cell plate	3.70E-03
28	GO:0000145: exocyst	4.06E-03
29	GO:0030529: intracellular ribonucleoprotein complex	4.99E-03
30	GO:0005743: mitochondrial inner membrane	5.06E-03
31	GO:0000502: proteasome complex	1.04E-02
32	GO:0005747: mitochondrial respiratory chain complex I	1.19E-02
33	GO:0016607: nuclear speck	1.19E-02
34	GO:0009524: phragmoplast	1.62E-02
35	GO:0005759: mitochondrial matrix	1.83E-02
36	GO:0005840: ribosome	2.05E-02
37	GO:0005886: plasma membrane	2.26E-02
38	GO:0022627: cytosolic small ribosomal subunit	2.39E-02
39	GO:0005773: vacuole	2.82E-02
40	GO:0005874: microtubule	3.04E-02
41	GO:0022625: cytosolic large ribosomal subunit	3.23E-02
42	GO:0016020: membrane	3.50E-02
43	GO:0043231: intracellular membrane-bounded organelle	4.41E-02