Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G02110

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006429: leucyl-tRNA aminoacylation0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0030155: regulation of cell adhesion0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0061635: regulation of protein complex stability0.00E+00
7GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
8GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
9GO:0080127: fruit septum development0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0090042: tubulin deacetylation0.00E+00
12GO:0006114: glycerol biosynthetic process0.00E+00
13GO:0018023: peptidyl-lysine trimethylation0.00E+00
14GO:0006399: tRNA metabolic process0.00E+00
15GO:0015979: photosynthesis1.51E-14
16GO:0010027: thylakoid membrane organization7.65E-12
17GO:0032544: plastid translation2.55E-11
18GO:0006412: translation5.79E-09
19GO:0009773: photosynthetic electron transport in photosystem I1.92E-06
20GO:0009658: chloroplast organization5.58E-06
21GO:0042254: ribosome biogenesis5.98E-06
22GO:0030388: fructose 1,6-bisphosphate metabolic process7.22E-06
23GO:0018026: peptidyl-lysine monomethylation7.22E-06
24GO:0015995: chlorophyll biosynthetic process1.31E-05
25GO:0006000: fructose metabolic process2.51E-05
26GO:0010206: photosystem II repair3.20E-05
27GO:0009735: response to cytokinin3.75E-05
28GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.48E-05
29GO:0010021: amylopectin biosynthetic process9.64E-05
30GO:0006094: gluconeogenesis1.05E-04
31GO:0042549: photosystem II stabilization2.14E-04
32GO:0061077: chaperone-mediated protein folding2.67E-04
33GO:0042372: phylloquinone biosynthetic process2.88E-04
34GO:0042026: protein refolding2.88E-04
35GO:0046167: glycerol-3-phosphate biosynthetic process4.02E-04
36GO:0043007: maintenance of rDNA4.02E-04
37GO:1902458: positive regulation of stomatal opening4.02E-04
38GO:0034337: RNA folding4.02E-04
39GO:0000476: maturation of 4.5S rRNA4.02E-04
40GO:0000967: rRNA 5'-end processing4.02E-04
41GO:0010493: Lewis a epitope biosynthetic process4.02E-04
42GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.02E-04
43GO:1902478: negative regulation of defense response to bacterium, incompatible interaction4.02E-04
44GO:0006438: valyl-tRNA aminoacylation4.02E-04
45GO:0043953: protein transport by the Tat complex4.02E-04
46GO:0000481: maturation of 5S rRNA4.02E-04
47GO:0042371: vitamin K biosynthetic process4.02E-04
48GO:0065002: intracellular protein transmembrane transport4.02E-04
49GO:0005978: glycogen biosynthetic process4.66E-04
50GO:0006002: fructose 6-phosphate metabolic process5.69E-04
51GO:0019252: starch biosynthetic process6.20E-04
52GO:0005982: starch metabolic process8.05E-04
53GO:1903426: regulation of reactive oxygen species biosynthetic process8.71E-04
54GO:0006521: regulation of cellular amino acid metabolic process8.71E-04
55GO:0080181: lateral root branching8.71E-04
56GO:0034470: ncRNA processing8.71E-04
57GO:0019388: galactose catabolic process8.71E-04
58GO:0006432: phenylalanyl-tRNA aminoacylation8.71E-04
59GO:0006650: glycerophospholipid metabolic process8.71E-04
60GO:0006782: protoporphyrinogen IX biosynthetic process9.37E-04
61GO:0009409: response to cold9.86E-04
62GO:0005983: starch catabolic process1.23E-03
63GO:0005986: sucrose biosynthetic process1.40E-03
64GO:0005977: glycogen metabolic process1.41E-03
65GO:0048281: inflorescence morphogenesis1.41E-03
66GO:0016311: dephosphorylation1.41E-03
67GO:0046168: glycerol-3-phosphate catabolic process1.41E-03
68GO:0034051: negative regulation of plant-type hypersensitive response1.41E-03
69GO:0009405: pathogenesis1.41E-03
70GO:0016050: vesicle organization1.41E-03
71GO:0007231: osmosensory signaling pathway2.04E-03
72GO:0051085: chaperone mediated protein folding requiring cofactor2.04E-03
73GO:0010306: rhamnogalacturonan II biosynthetic process2.04E-03
74GO:0007276: gamete generation2.04E-03
75GO:0006072: glycerol-3-phosphate metabolic process2.04E-03
76GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.04E-03
77GO:0009590: detection of gravity2.04E-03
78GO:0010148: transpiration2.04E-03
79GO:2001141: regulation of RNA biosynthetic process2.04E-03
80GO:0006418: tRNA aminoacylation for protein translation2.41E-03
81GO:0006808: regulation of nitrogen utilization2.74E-03
82GO:0051781: positive regulation of cell division2.74E-03
83GO:0019464: glycine decarboxylation via glycine cleavage system2.74E-03
84GO:0006109: regulation of carbohydrate metabolic process2.74E-03
85GO:0033500: carbohydrate homeostasis2.74E-03
86GO:0006546: glycine catabolic process2.74E-03
87GO:0006552: leucine catabolic process2.74E-03
88GO:0006461: protein complex assembly3.51E-03
89GO:0000304: response to singlet oxygen3.51E-03
90GO:0032543: mitochondrial translation3.51E-03
91GO:0010236: plastoquinone biosynthetic process3.51E-03
92GO:0045038: protein import into chloroplast thylakoid membrane3.51E-03
93GO:0016120: carotene biosynthetic process3.51E-03
94GO:0009793: embryo development ending in seed dormancy3.92E-03
95GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.35E-03
96GO:0042793: transcription from plastid promoter4.35E-03
97GO:0010190: cytochrome b6f complex assembly4.35E-03
98GO:0003006: developmental process involved in reproduction4.35E-03
99GO:0009955: adaxial/abaxial pattern specification5.24E-03
100GO:0006458: 'de novo' protein folding5.24E-03
101GO:1901259: chloroplast rRNA processing5.24E-03
102GO:0009772: photosynthetic electron transport in photosystem II6.19E-03
103GO:0070370: cellular heat acclimation6.19E-03
104GO:0010196: nonphotochemical quenching6.19E-03
105GO:0022904: respiratory electron transport chain6.19E-03
106GO:0010103: stomatal complex morphogenesis6.19E-03
107GO:0000105: histidine biosynthetic process7.20E-03
108GO:0030091: protein repair7.20E-03
109GO:0032508: DNA duplex unwinding7.20E-03
110GO:2000070: regulation of response to water deprivation7.20E-03
111GO:0010492: maintenance of shoot apical meristem identity7.20E-03
112GO:0017004: cytochrome complex assembly8.26E-03
113GO:0071482: cellular response to light stimulus8.26E-03
114GO:0015996: chlorophyll catabolic process8.26E-03
115GO:0001558: regulation of cell growth8.26E-03
116GO:0007186: G-protein coupled receptor signaling pathway8.26E-03
117GO:0009657: plastid organization8.26E-03
118GO:0009627: systemic acquired resistance8.68E-03
119GO:0006783: heme biosynthetic process9.38E-03
120GO:0048507: meristem development9.38E-03
121GO:0006810: transport9.58E-03
122GO:0009817: defense response to fungus, incompatible interaction1.02E-02
123GO:0009790: embryo development1.05E-02
124GO:0010205: photoinhibition1.06E-02
125GO:0006779: porphyrin-containing compound biosynthetic process1.06E-02
126GO:0031627: telomeric loop formation1.18E-02
127GO:0048829: root cap development1.18E-02
128GO:0009637: response to blue light1.29E-02
129GO:0010015: root morphogenesis1.30E-02
130GO:0019684: photosynthesis, light reaction1.30E-02
131GO:0006816: calcium ion transport1.30E-02
132GO:0009089: lysine biosynthetic process via diaminopimelate1.30E-02
133GO:0009073: aromatic amino acid family biosynthetic process1.30E-02
134GO:0043085: positive regulation of catalytic activity1.30E-02
135GO:0006352: DNA-templated transcription, initiation1.30E-02
136GO:0009750: response to fructose1.30E-02
137GO:0006415: translational termination1.30E-02
138GO:0045037: protein import into chloroplast stroma1.44E-02
139GO:0010582: floral meristem determinacy1.44E-02
140GO:0018107: peptidyl-threonine phosphorylation1.57E-02
141GO:0010628: positive regulation of gene expression1.57E-02
142GO:0006006: glucose metabolic process1.57E-02
143GO:0010114: response to red light1.67E-02
144GO:0009887: animal organ morphogenesis1.71E-02
145GO:0006302: double-strand break repair1.71E-02
146GO:0048467: gynoecium development1.71E-02
147GO:0010207: photosystem II assembly1.71E-02
148GO:0010020: chloroplast fission1.71E-02
149GO:0019253: reductive pentose-phosphate cycle1.71E-02
150GO:0005985: sucrose metabolic process1.86E-02
151GO:0010030: positive regulation of seed germination1.86E-02
152GO:0070588: calcium ion transmembrane transport1.86E-02
153GO:0000162: tryptophan biosynthetic process2.01E-02
154GO:0006636: unsaturated fatty acid biosynthetic process2.01E-02
155GO:0009944: polarity specification of adaxial/abaxial axis2.16E-02
156GO:0006289: nucleotide-excision repair2.16E-02
157GO:0051302: regulation of cell division2.32E-02
158GO:0016575: histone deacetylation2.32E-02
159GO:0009768: photosynthesis, light harvesting in photosystem I2.32E-02
160GO:0048511: rhythmic process2.48E-02
161GO:0019915: lipid storage2.48E-02
162GO:0031408: oxylipin biosynthetic process2.48E-02
163GO:0051321: meiotic cell cycle2.48E-02
164GO:0048278: vesicle docking2.48E-02
165GO:0007005: mitochondrion organization2.64E-02
166GO:0006096: glycolytic process2.67E-02
167GO:0005975: carbohydrate metabolic process2.70E-02
168GO:0009686: gibberellin biosynthetic process2.81E-02
169GO:0071369: cellular response to ethylene stimulus2.81E-02
170GO:0001944: vasculature development2.81E-02
171GO:0042127: regulation of cell proliferation2.99E-02
172GO:0009561: megagametogenesis2.99E-02
173GO:0016117: carotenoid biosynthetic process3.16E-02
174GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.16E-02
175GO:0042631: cellular response to water deprivation3.34E-02
176GO:0006979: response to oxidative stress3.44E-02
177GO:0048868: pollen tube development3.53E-02
178GO:0006520: cellular amino acid metabolic process3.53E-02
179GO:0006662: glycerol ether metabolic process3.53E-02
180GO:0010182: sugar mediated signaling pathway3.53E-02
181GO:0045454: cell redox homeostasis3.68E-02
182GO:0061025: membrane fusion3.71E-02
183GO:0042752: regulation of circadian rhythm3.71E-02
184GO:0009646: response to absence of light3.71E-02
185GO:0008654: phospholipid biosynthetic process3.90E-02
186GO:0071554: cell wall organization or biogenesis4.09E-02
187GO:0032502: developmental process4.29E-02
188GO:0010583: response to cyclopentenone4.29E-02
189GO:0030163: protein catabolic process4.49E-02
190GO:0071281: cellular response to iron ion4.49E-02
191GO:0055114: oxidation-reduction process4.55E-02
192GO:0009567: double fertilization forming a zygote and endosperm4.69E-02
193GO:0019760: glucosinolate metabolic process4.69E-02
194GO:0006457: protein folding4.70E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
3GO:0043136: glycerol-3-phosphatase activity0.00E+00
4GO:0000121: glycerol-1-phosphatase activity0.00E+00
5GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
6GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
7GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
8GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
9GO:0043014: alpha-tubulin binding0.00E+00
10GO:0048039: ubiquinone binding0.00E+00
11GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
12GO:0051721: protein phosphatase 2A binding0.00E+00
13GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
14GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
15GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
16GO:0004823: leucine-tRNA ligase activity0.00E+00
17GO:0042903: tubulin deacetylase activity0.00E+00
18GO:0016166: phytoene dehydrogenase activity0.00E+00
19GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
20GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
21GO:0009899: ent-kaurene synthase activity0.00E+00
22GO:0019843: rRNA binding2.19E-15
23GO:0003735: structural constituent of ribosome4.76E-10
24GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.22E-06
25GO:0005528: FK506 binding9.98E-06
26GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.63E-05
27GO:0016279: protein-lysine N-methyltransferase activity9.64E-05
28GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.64E-05
29GO:0051082: unfolded protein binding2.16E-04
30GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.02E-04
31GO:0004347: glucose-6-phosphate isomerase activity4.02E-04
32GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.02E-04
33GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.02E-04
34GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.02E-04
35GO:0046920: alpha-(1->3)-fucosyltransferase activity4.02E-04
36GO:0050308: sugar-phosphatase activity4.02E-04
37GO:0019203: carbohydrate phosphatase activity4.02E-04
38GO:0004832: valine-tRNA ligase activity4.02E-04
39GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.02E-04
40GO:0004853: uroporphyrinogen decarboxylase activity4.02E-04
41GO:0045485: omega-6 fatty acid desaturase activity4.02E-04
42GO:0016868: intramolecular transferase activity, phosphotransferases8.71E-04
43GO:0009977: proton motive force dependent protein transmembrane transporter activity8.71E-04
44GO:0003844: 1,4-alpha-glucan branching enzyme activity8.71E-04
45GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.71E-04
46GO:0004614: phosphoglucomutase activity8.71E-04
47GO:0019156: isoamylase activity8.71E-04
48GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.71E-04
49GO:0004826: phenylalanine-tRNA ligase activity8.71E-04
50GO:0044183: protein binding involved in protein folding1.08E-03
51GO:0031072: heat shock protein binding1.40E-03
52GO:0008265: Mo-molybdopterin cofactor sulfurase activity1.41E-03
53GO:0043169: cation binding1.41E-03
54GO:0005504: fatty acid binding1.41E-03
55GO:0090729: toxin activity1.41E-03
56GO:0017150: tRNA dihydrouridine synthase activity1.41E-03
57GO:0002161: aminoacyl-tRNA editing activity1.41E-03
58GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.41E-03
59GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.04E-03
60GO:0004375: glycine dehydrogenase (decarboxylating) activity2.04E-03
61GO:0048487: beta-tubulin binding2.04E-03
62GO:0016149: translation release factor activity, codon specific2.04E-03
63GO:0016851: magnesium chelatase activity2.04E-03
64GO:0043023: ribosomal large subunit binding2.04E-03
65GO:0001053: plastid sigma factor activity2.74E-03
66GO:0016987: sigma factor activity2.74E-03
67GO:0045430: chalcone isomerase activity2.74E-03
68GO:0019199: transmembrane receptor protein kinase activity2.74E-03
69GO:0042277: peptide binding2.74E-03
70GO:0004659: prenyltransferase activity2.74E-03
71GO:0043621: protein self-association3.10E-03
72GO:0030151: molybdenum ion binding3.51E-03
73GO:0004040: amidase activity3.51E-03
74GO:0004812: aminoacyl-tRNA ligase activity3.73E-03
75GO:0009055: electron carrier activity4.25E-03
76GO:2001070: starch binding4.35E-03
77GO:0004556: alpha-amylase activity4.35E-03
78GO:0016208: AMP binding4.35E-03
79GO:0051920: peroxiredoxin activity5.24E-03
80GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.24E-03
81GO:0048038: quinone binding5.36E-03
82GO:0000287: magnesium ion binding5.36E-03
83GO:0016209: antioxidant activity7.20E-03
84GO:0004033: aldo-keto reductase (NADP) activity7.20E-03
85GO:0016491: oxidoreductase activity7.58E-03
86GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.26E-03
87GO:0003747: translation release factor activity9.38E-03
88GO:0008417: fucosyltransferase activity9.38E-03
89GO:0008138: protein tyrosine/serine/threonine phosphatase activity9.38E-03
90GO:0008236: serine-type peptidase activity9.66E-03
91GO:0004252: serine-type endopeptidase activity9.80E-03
92GO:0008047: enzyme activator activity1.18E-02
93GO:0003691: double-stranded telomeric DNA binding1.30E-02
94GO:0000049: tRNA binding1.44E-02
95GO:0005262: calcium channel activity1.57E-02
96GO:0004565: beta-galactosidase activity1.57E-02
97GO:0008266: poly(U) RNA binding1.71E-02
98GO:0051537: 2 iron, 2 sulfur cluster binding1.81E-02
99GO:0003887: DNA-directed DNA polymerase activity2.01E-02
100GO:0031409: pigment binding2.01E-02
101GO:0004857: enzyme inhibitor activity2.16E-02
102GO:0004407: histone deacetylase activity2.16E-02
103GO:0008408: 3'-5' exonuclease activity2.48E-02
104GO:0030570: pectate lyase activity2.81E-02
105GO:0005509: calcium ion binding2.97E-02
106GO:0003756: protein disulfide isomerase activity2.99E-02
107GO:0047134: protein-disulfide reductase activity3.16E-02
108GO:0004791: thioredoxin-disulfide reductase activity3.71E-02
109GO:0030170: pyridoxal phosphate binding4.44E-02
110GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.49E-02
111GO:0003684: damaged DNA binding4.69E-02
112GO:0008483: transaminase activity4.90E-02
RankGO TermAdjusted P value
1GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0010368: chloroplast isoamylase complex0.00E+00
4GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
5GO:0044391: ribosomal subunit0.00E+00
6GO:0009507: chloroplast8.25E-72
7GO:0009570: chloroplast stroma9.39E-48
8GO:0009534: chloroplast thylakoid9.70E-36
9GO:0009535: chloroplast thylakoid membrane3.32E-32
10GO:0009941: chloroplast envelope8.90E-31
11GO:0009579: thylakoid1.25E-20
12GO:0009543: chloroplast thylakoid lumen6.83E-17
13GO:0031977: thylakoid lumen6.31E-12
14GO:0005840: ribosome2.25E-10
15GO:0009538: photosystem I reaction center2.25E-07
16GO:0010319: stromule2.52E-07
17GO:0009654: photosystem II oxygen evolving complex3.49E-07
18GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.04E-07
19GO:0019898: extrinsic component of membrane2.73E-06
20GO:0030095: chloroplast photosystem II4.77E-06
21GO:0010287: plastoglobule4.05E-05
22GO:0009295: nucleoid1.03E-04
23GO:0009508: plastid chromosome1.05E-04
24GO:0009706: chloroplast inner membrane2.16E-04
25GO:0009536: plastid2.39E-04
26GO:0009533: chloroplast stromal thylakoid3.73E-04
27GO:0009547: plastid ribosome4.02E-04
28GO:0031361: integral component of thylakoid membrane4.02E-04
29GO:0000791: euchromatin4.02E-04
30GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex4.02E-04
31GO:0031969: chloroplast membrane4.51E-04
32GO:0000427: plastid-encoded plastid RNA polymerase complex8.71E-04
33GO:0030870: Mre11 complex8.71E-04
34GO:0009528: plastid inner membrane1.41E-03
35GO:0033281: TAT protein transport complex1.41E-03
36GO:0010007: magnesium chelatase complex1.41E-03
37GO:0009509: chromoplast1.41E-03
38GO:0015934: large ribosomal subunit1.80E-03
39GO:0005960: glycine cleavage complex2.04E-03
40GO:0009331: glycerol-3-phosphate dehydrogenase complex2.04E-03
41GO:0042651: thylakoid membrane2.41E-03
42GO:0009532: plastid stroma2.65E-03
43GO:0009527: plastid outer membrane2.74E-03
44GO:0000795: synaptonemal complex3.51E-03
45GO:0009840: chloroplastic endopeptidase Clp complex5.24E-03
46GO:0016272: prefoldin complex5.24E-03
47GO:0009501: amyloplast7.20E-03
48GO:0031305: integral component of mitochondrial inner membrane7.20E-03
49GO:0000783: nuclear telomere cap complex8.26E-03
50GO:0005763: mitochondrial small ribosomal subunit9.38E-03
51GO:0022626: cytosolic ribosome9.47E-03
52GO:0009707: chloroplast outer membrane1.02E-02
53GO:0055028: cortical microtubule1.18E-02
54GO:0005740: mitochondrial envelope1.18E-02
55GO:0000311: plastid large ribosomal subunit1.44E-02
56GO:0032040: small-subunit processome1.44E-02
57GO:0005578: proteinaceous extracellular matrix1.57E-02
58GO:0000312: plastid small ribosomal subunit1.71E-02
59GO:0030076: light-harvesting complex1.86E-02
60GO:0043234: protein complex2.01E-02
61GO:0015935: small ribosomal subunit2.48E-02
62GO:0048046: apoplast2.79E-02
63GO:0009522: photosystem I3.71E-02
64GO:0009504: cell plate3.90E-02
65GO:0009523: photosystem II3.90E-02
66GO:0000785: chromatin4.29E-02
67GO:0032580: Golgi cisterna membrane4.69E-02
68GO:0005778: peroxisomal membrane4.90E-02
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Gene type



Gene DE type