co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G01790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0019323: pentose catabolic process	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:0009877: nodulation	0.00E+00
5	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
6	GO:0016553: base conversion or substitution editing	0.00E+00
7	GO:0090627: plant epidermal cell differentiation	0.00E+00
8	GO:0009735: response to cytokinin	2.77E-10
9	GO:0032544: plastid translation	1.23E-08
10	GO:0019252: starch biosynthetic process	4.88E-08
11	GO:0010206: photosystem II repair	2.55E-06
12	GO:0006412: translation	8.20E-06
13	GO:0009817: defense response to fungus, incompatible interaction	1.19E-05
14	GO:0010021: amylopectin biosynthetic process	1.63E-05
15	GO:0005978: glycogen biosynthetic process	9.72E-05
16	GO:0030163: protein catabolic process	1.08E-04
17	GO:0044262: cellular carbohydrate metabolic process	1.42E-04
18	GO:0032958: inositol phosphate biosynthetic process	1.42E-04
19	GO:0071588: hydrogen peroxide mediated signaling pathway	1.42E-04
20	GO:0000023: maltose metabolic process	1.42E-04
21	GO:0000025: maltose catabolic process	1.42E-04
22	GO:0043489: RNA stabilization	1.42E-04
23	GO:0005983: starch catabolic process	2.87E-04
24	GO:0010270: photosystem II oxygen evolving complex assembly	3.25E-04
25	GO:0005976: polysaccharide metabolic process	3.25E-04
26	GO:0006518: peptide metabolic process	5.33E-04
27	GO:0009658: chloroplast organization	5.59E-04
28	GO:0042254: ribosome biogenesis	5.75E-04
29	GO:0042742: defense response to bacterium	6.13E-04
30	GO:0006020: inositol metabolic process	7.63E-04
31	GO:0009052: pentose-phosphate shunt, non-oxidative branch	7.63E-04
32	GO:0010731: protein glutathionylation	7.63E-04
33	GO:0006424: glutamyl-tRNA aminoacylation	7.63E-04
34	GO:0000413: protein peptidyl-prolyl isomerization	9.27E-04
35	GO:0015979: photosynthesis	9.44E-04
36	GO:0010037: response to carbon dioxide	1.01E-03
37	GO:0015976: carbon utilization	1.01E-03
38	GO:0019464: glycine decarboxylation via glycine cleavage system	1.01E-03
39	GO:0045727: positive regulation of translation	1.01E-03
40	GO:2000122: negative regulation of stomatal complex development	1.01E-03
41	GO:0009409: response to cold	1.11E-03
42	GO:0000302: response to reactive oxygen species	1.22E-03
43	GO:0032543: mitochondrial translation	1.28E-03
44	GO:0006461: protein complex assembly	1.28E-03
45	GO:0009435: NAD biosynthetic process	1.28E-03
46	GO:0006544: glycine metabolic process	1.28E-03
47	GO:0006014: D-ribose metabolic process	1.57E-03
48	GO:0006563: L-serine metabolic process	1.57E-03
49	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.57E-03
50	GO:0042549: photosystem II stabilization	1.57E-03
51	GO:0000470: maturation of LSU-rRNA	1.57E-03
52	GO:0006828: manganese ion transport	1.57E-03
53	GO:0009913: epidermal cell differentiation	1.57E-03
54	GO:0006508: proteolysis	1.73E-03
55	GO:0010027: thylakoid membrane organization	1.74E-03
56	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.88E-03
57	GO:0010019: chloroplast-nucleus signaling pathway	1.88E-03
58	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.88E-03
59	GO:0015995: chlorophyll biosynthetic process	2.05E-03
60	GO:0010196: nonphotochemical quenching	2.21E-03
61	GO:0043068: positive regulation of programmed cell death	2.56E-03
62	GO:0009704: de-etiolation	2.56E-03
63	GO:0048564: photosystem I assembly	2.56E-03
64	GO:0008610: lipid biosynthetic process	2.56E-03
65	GO:0009631: cold acclimation	2.61E-03
66	GO:0009657: plastid organization	2.93E-03
67	GO:0034599: cellular response to oxidative stress	2.99E-03
68	GO:0006783: heme biosynthetic process	3.31E-03
69	GO:0005982: starch metabolic process	3.71E-03
70	GO:0010205: photoinhibition	3.71E-03
71	GO:0035999: tetrahydrofolate interconversion	3.71E-03
72	GO:0006782: protoporphyrinogen IX biosynthetic process	4.12E-03
73	GO:0016485: protein processing	4.55E-03
74	GO:0006816: calcium ion transport	4.55E-03
75	GO:0009773: photosynthetic electron transport in photosystem I	4.55E-03
76	GO:0006415: translational termination	4.55E-03
77	GO:0072593: reactive oxygen species metabolic process	4.55E-03
78	GO:0009767: photosynthetic electron transport chain	5.45E-03
79	GO:0010102: lateral root morphogenesis	5.45E-03
80	GO:0006807: nitrogen compound metabolic process	5.45E-03
81	GO:0010020: chloroplast fission	5.92E-03
82	GO:0010207: photosystem II assembly	5.92E-03
83	GO:0010025: wax biosynthetic process	6.91E-03
84	GO:0006289: nucleotide-excision repair	7.42E-03
85	GO:0000027: ribosomal large subunit assembly	7.42E-03
86	GO:0006418: tRNA aminoacylation for protein translation	7.95E-03
87	GO:0008152: metabolic process	8.05E-03
88	GO:0035428: hexose transmembrane transport	9.05E-03
89	GO:0042744: hydrogen peroxide catabolic process	1.00E-02
90	GO:0006284: base-excision repair	1.02E-02
91	GO:0042335: cuticle development	1.14E-02
92	GO:0046323: glucose import	1.20E-02
93	GO:0007623: circadian rhythm	1.22E-02
94	GO:0048825: cotyledon development	1.33E-02
95	GO:0005975: carbohydrate metabolic process	1.81E-02
96	GO:0046686: response to cadmium ion	1.88E-02
97	GO:0048481: plant ovule development	2.19E-02
98	GO:0009813: flavonoid biosynthetic process	2.26E-02
99	GO:0010119: regulation of stomatal movement	2.42E-02
100	GO:0016051: carbohydrate biosynthetic process	2.59E-02
101	GO:0009853: photorespiration	2.59E-02
102	GO:0045087: innate immune response	2.59E-02
103	GO:0045454: cell redox homeostasis	2.81E-02
104	GO:0006631: fatty acid metabolic process	2.93E-02
105	GO:0009640: photomorphogenesis	3.10E-02
106	GO:0032259: methylation	3.31E-02
107	GO:0006855: drug transmembrane transport	3.46E-02
108	GO:0006629: lipid metabolic process	3.46E-02
109	GO:0006364: rRNA processing	3.83E-02
110	GO:0009585: red, far-red light phototransduction	3.83E-02
111	GO:0009626: plant-type hypersensitive response	4.52E-02
112	GO:0009624: response to nematode	4.92E-02
113	GO:0055114: oxidation-reduction process	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0010303: limit dextrinase activity	0.00E+00
3	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
4	GO:0051060: pullulanase activity	0.00E+00
5	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
6	GO:0019843: rRNA binding	7.14E-10
7	GO:0008266: poly(U) RNA binding	1.69E-07
8	GO:0003735: structural constituent of ribosome	5.63E-07
9	GO:0004222: metalloendopeptidase activity	1.46E-05
10	GO:0004130: cytochrome-c peroxidase activity	3.99E-05
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.37E-05
12	GO:0051920: peroxiredoxin activity	5.62E-05
13	GO:0016209: antioxidant activity	9.72E-05
14	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	1.42E-04
15	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.42E-04
16	GO:0000829: inositol heptakisphosphate kinase activity	1.42E-04
17	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.42E-04
18	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.42E-04
19	GO:0000828: inositol hexakisphosphate kinase activity	1.42E-04
20	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.42E-04
21	GO:0004853: uroporphyrinogen decarboxylase activity	1.42E-04
22	GO:0004856: xylulokinase activity	1.42E-04
23	GO:0009496: plastoquinol--plastocyanin reductase activity	1.42E-04
24	GO:0004134: 4-alpha-glucanotransferase activity	1.42E-04
25	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	1.42E-04
26	GO:0010297: heteropolysaccharide binding	3.25E-04
27	GO:0033201: alpha-1,4-glucan synthase activity	3.25E-04
28	GO:0004750: ribulose-phosphate 3-epimerase activity	3.25E-04
29	GO:0008967: phosphoglycolate phosphatase activity	3.25E-04
30	GO:0018708: thiol S-methyltransferase activity	3.25E-04
31	GO:0003844: 1,4-alpha-glucan branching enzyme activity	3.25E-04
32	GO:0005528: FK506 binding	5.13E-04
33	GO:0045174: glutathione dehydrogenase (ascorbate) activity	5.33E-04
34	GO:0030267: glyoxylate reductase (NADP) activity	5.33E-04
35	GO:0004324: ferredoxin-NADP+ reductase activity	5.33E-04
36	GO:0043169: cation binding	5.33E-04
37	GO:0004373: glycogen (starch) synthase activity	5.33E-04
38	GO:0002161: aminoacyl-tRNA editing activity	5.33E-04
39	GO:0004148: dihydrolipoyl dehydrogenase activity	5.33E-04
40	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	5.33E-04
41	GO:0005504: fatty acid binding	5.33E-04
42	GO:0016149: translation release factor activity, codon specific	7.63E-04
43	GO:0043023: ribosomal large subunit binding	7.63E-04
44	GO:0016851: magnesium chelatase activity	7.63E-04
45	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.01E-03
46	GO:0019104: DNA N-glycosylase activity	1.01E-03
47	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.01E-03
48	GO:0045430: chalcone isomerase activity	1.01E-03
49	GO:0009011: starch synthase activity	1.01E-03
50	GO:0050662: coenzyme binding	1.07E-03
51	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.28E-03
52	GO:0004372: glycine hydroxymethyltransferase activity	1.28E-03
53	GO:0003959: NADPH dehydrogenase activity	1.28E-03
54	GO:0008237: metallopeptidase activity	1.56E-03
55	GO:0016688: L-ascorbate peroxidase activity	1.57E-03
56	GO:2001070: starch binding	1.57E-03
57	GO:0004556: alpha-amylase activity	1.57E-03
58	GO:0004602: glutathione peroxidase activity	1.88E-03
59	GO:0004747: ribokinase activity	1.88E-03
60	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.88E-03
61	GO:0008236: serine-type peptidase activity	2.16E-03
62	GO:0004620: phospholipase activity	2.21E-03
63	GO:0008865: fructokinase activity	2.56E-03
64	GO:0004601: peroxidase activity	3.30E-03
65	GO:0003747: translation release factor activity	3.31E-03
66	GO:0005384: manganese ion transmembrane transporter activity	3.71E-03
67	GO:0016491: oxidoreductase activity	4.00E-03
68	GO:0047372: acylglycerol lipase activity	4.55E-03
69	GO:0000049: tRNA binding	4.99E-03
70	GO:0004089: carbonate dehydratase activity	5.45E-03
71	GO:0015095: magnesium ion transmembrane transporter activity	5.45E-03
72	GO:0004190: aspartic-type endopeptidase activity	6.41E-03
73	GO:0004176: ATP-dependent peptidase activity	8.49E-03
74	GO:0016787: hydrolase activity	9.35E-03
75	GO:0004252: serine-type endopeptidase activity	9.79E-03
76	GO:0004812: aminoacyl-tRNA ligase activity	1.08E-02
77	GO:0005355: glucose transmembrane transporter activity	1.26E-02
78	GO:0048038: quinone binding	1.39E-02
79	GO:0004197: cysteine-type endopeptidase activity	1.46E-02
80	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.55E-02
81	GO:0003684: damaged DNA binding	1.60E-02
82	GO:0003729: mRNA binding	1.76E-02
83	GO:0008168: methyltransferase activity	1.82E-02
84	GO:0008233: peptidase activity	2.31E-02
85	GO:0004364: glutathione transferase activity	3.01E-02
86	GO:0051537: 2 iron, 2 sulfur cluster binding	3.28E-02
87	GO:0005198: structural molecule activity	3.37E-02
88	GO:0003690: double-stranded DNA binding	3.93E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	7.25E-50
3	GO:0009570: chloroplast stroma	5.61E-46
4	GO:0009941: chloroplast envelope	8.20E-40
5	GO:0009534: chloroplast thylakoid	9.15E-32
6	GO:0009579: thylakoid	6.97E-27
7	GO:0009535: chloroplast thylakoid membrane	6.10E-26
8	GO:0031977: thylakoid lumen	1.22E-11
9	GO:0009543: chloroplast thylakoid lumen	1.94E-11
10	GO:0010287: plastoglobule	1.87E-08
11	GO:0009533: chloroplast stromal thylakoid	7.93E-07
12	GO:0005840: ribosome	2.80E-06
13	GO:0010319: stromule	5.24E-06
14	GO:0009501: amyloplast	9.72E-05
15	GO:0009706: chloroplast inner membrane	1.10E-04
16	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.42E-04
17	GO:0000311: plastid large ribosomal subunit	2.87E-04
18	GO:0030093: chloroplast photosystem I	3.25E-04
19	GO:0009508: plastid chromosome	3.27E-04
20	GO:0010007: magnesium chelatase complex	5.33E-04
21	GO:0009512: cytochrome b6f complex	1.28E-03
22	GO:0016020: membrane	1.29E-03
23	GO:0009295: nucleoid	1.56E-03
24	GO:0048046: apoplast	2.50E-03
25	GO:0042644: chloroplast nucleoid	3.31E-03
26	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.31E-03
27	GO:0009536: plastid	3.53E-03
28	GO:0031969: chloroplast membrane	4.34E-03
29	GO:0022625: cytosolic large ribosomal subunit	4.62E-03
30	GO:0000312: plastid small ribosomal subunit	5.92E-03
31	GO:0030095: chloroplast photosystem II	5.92E-03
32	GO:0005759: mitochondrial matrix	1.11E-02
33	GO:0009523: photosystem II	1.33E-02
34	GO:0022626: cytosolic ribosome	1.39E-02
35	GO:0030529: intracellular ribonucleoprotein complex	1.81E-02
36	GO:0015934: large ribosomal subunit	2.42E-02
37	GO:0016607: nuclear speck	4.42E-02