co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G01170

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0009715: chalcone biosynthetic process	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
5	GO:0006114: glycerol biosynthetic process	0.00E+00
6	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
7	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
8	GO:0042493: response to drug	0.00E+00
9	GO:0015979: photosynthesis	3.16E-07
10	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.05E-07
11	GO:0048564: photosystem I assembly	6.41E-05
12	GO:0043007: maintenance of rDNA	1.08E-04
13	GO:0034337: RNA folding	1.08E-04
14	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.08E-04
15	GO:0000476: maturation of 4.5S rRNA	1.08E-04
16	GO:0000967: rRNA 5'-end processing	1.08E-04
17	GO:0000481: maturation of 5S rRNA	1.08E-04
18	GO:0034470: ncRNA processing	2.52E-04
19	GO:0006435: threonyl-tRNA aminoacylation	2.52E-04
20	GO:0009629: response to gravity	2.52E-04
21	GO:0000256: allantoin catabolic process	2.52E-04
22	GO:0005977: glycogen metabolic process	4.19E-04
23	GO:0006954: inflammatory response	4.19E-04
24	GO:0010136: ureide catabolic process	4.19E-04
25	GO:0071492: cellular response to UV-A	4.19E-04
26	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	6.01E-04
27	GO:2001141: regulation of RNA biosynthetic process	6.01E-04
28	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.01E-04
29	GO:0006020: inositol metabolic process	6.01E-04
30	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	6.01E-04
31	GO:0006145: purine nucleobase catabolic process	6.01E-04
32	GO:0009052: pentose-phosphate shunt, non-oxidative branch	6.01E-04
33	GO:0009650: UV protection	6.01E-04
34	GO:0010021: amylopectin biosynthetic process	7.98E-04
35	GO:0071486: cellular response to high light intensity	7.98E-04
36	GO:0009765: photosynthesis, light harvesting	7.98E-04
37	GO:0015994: chlorophyll metabolic process	7.98E-04
38	GO:0022622: root system development	7.98E-04
39	GO:0006021: inositol biosynthetic process	7.98E-04
40	GO:0006656: phosphatidylcholine biosynthetic process	1.01E-03
41	GO:0016558: protein import into peroxisome matrix	1.01E-03
42	GO:0042549: photosystem II stabilization	1.23E-03
43	GO:0046855: inositol phosphate dephosphorylation	1.23E-03
44	GO:0010189: vitamin E biosynthetic process	1.47E-03
45	GO:0016311: dephosphorylation	1.50E-03
46	GO:0018298: protein-chromophore linkage	1.58E-03
47	GO:0032880: regulation of protein localization	1.73E-03
48	GO:0031540: regulation of anthocyanin biosynthetic process	2.00E-03
49	GO:0000105: histidine biosynthetic process	2.00E-03
50	GO:0009231: riboflavin biosynthetic process	2.00E-03
51	GO:0009642: response to light intensity	2.00E-03
52	GO:0006875: cellular metal ion homeostasis	2.00E-03
53	GO:0006605: protein targeting	2.00E-03
54	GO:0032508: DNA duplex unwinding	2.00E-03
55	GO:0071482: cellular response to light stimulus	2.28E-03
56	GO:0009657: plastid organization	2.28E-03
57	GO:0032544: plastid translation	2.28E-03
58	GO:0006098: pentose-phosphate shunt	2.57E-03
59	GO:0009821: alkaloid biosynthetic process	2.57E-03
60	GO:0055085: transmembrane transport	2.70E-03
61	GO:0010205: photoinhibition	2.88E-03
62	GO:0006415: translational termination	3.53E-03
63	GO:0019684: photosynthesis, light reaction	3.53E-03
64	GO:0009089: lysine biosynthetic process via diaminopimelate	3.53E-03
65	GO:0006352: DNA-templated transcription, initiation	3.53E-03
66	GO:0010224: response to UV-B	3.55E-03
67	GO:0006790: sulfur compound metabolic process	3.87E-03
68	GO:0045037: protein import into chloroplast stroma	3.87E-03
69	GO:0006096: glycolytic process	4.05E-03
70	GO:0006094: gluconeogenesis	4.23E-03
71	GO:2000012: regulation of auxin polar transport	4.23E-03
72	GO:0006006: glucose metabolic process	4.23E-03
73	GO:0019253: reductive pentose-phosphate cycle	4.59E-03
74	GO:0010207: photosystem II assembly	4.59E-03
75	GO:0046854: phosphatidylinositol phosphorylation	4.96E-03
76	GO:0019853: L-ascorbic acid biosynthetic process	4.96E-03
77	GO:0006863: purine nucleobase transport	5.35E-03
78	GO:0000162: tryptophan biosynthetic process	5.35E-03
79	GO:0048511: rhythmic process	6.56E-03
80	GO:0006730: one-carbon metabolic process	6.99E-03
81	GO:0006012: galactose metabolic process	7.42E-03
82	GO:0009411: response to UV	7.42E-03
83	GO:0006413: translational initiation	7.82E-03
84	GO:0009306: protein secretion	7.87E-03
85	GO:0008284: positive regulation of cell proliferation	8.32E-03
86	GO:0048868: pollen tube development	9.26E-03
87	GO:0009958: positive gravitropism	9.26E-03
88	GO:0009611: response to wounding	9.45E-03
89	GO:0042752: regulation of circadian rhythm	9.74E-03
90	GO:0019252: starch biosynthetic process	1.02E-02
91	GO:0008654: phospholipid biosynthetic process	1.02E-02
92	GO:0006635: fatty acid beta-oxidation	1.07E-02
93	GO:0002229: defense response to oomycetes	1.07E-02
94	GO:0010193: response to ozone	1.07E-02
95	GO:0001666: response to hypoxia	1.39E-02
96	GO:0010027: thylakoid membrane organization	1.39E-02
97	GO:0042128: nitrate assimilation	1.51E-02
98	GO:0009817: defense response to fungus, incompatible interaction	1.68E-02
99	GO:0009813: flavonoid biosynthetic process	1.74E-02
100	GO:0048527: lateral root development	1.86E-02
101	GO:0045454: cell redox homeostasis	1.94E-02
102	GO:0009637: response to blue light	1.99E-02
103	GO:0009853: photorespiration	1.99E-02
104	GO:0009867: jasmonic acid mediated signaling pathway	1.99E-02
105	GO:0010114: response to red light	2.38E-02
106	GO:0009926: auxin polar transport	2.38E-02
107	GO:0051707: response to other organism	2.38E-02
108	GO:0006281: DNA repair	2.39E-02
109	GO:0009644: response to high light intensity	2.52E-02
110	GO:0009553: embryo sac development	3.70E-02
111	GO:0005975: carbohydrate metabolic process	3.77E-02
112	GO:0006396: RNA processing	3.86E-02
113	GO:0009555: pollen development	4.23E-02
114	GO:0009058: biosynthetic process	4.61E-02
115	GO:0009790: embryo development	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
2	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
3	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
4	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
5	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
6	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
7	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
8	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
9	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
10	GO:0042623: ATPase activity, coupled	0.00E+00
11	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
12	GO:0010276: phytol kinase activity	0.00E+00
13	GO:0043495: protein anchor	1.03E-05
14	GO:0022891: substrate-specific transmembrane transporter activity	2.16E-05
15	GO:0019899: enzyme binding	4.92E-05
16	GO:0016168: chlorophyll binding	9.69E-05
17	GO:0015088: copper uptake transmembrane transporter activity	1.08E-04
18	GO:0047746: chlorophyllase activity	2.52E-04
19	GO:0052832: inositol monophosphate 3-phosphatase activity	2.52E-04
20	GO:0008934: inositol monophosphate 1-phosphatase activity	2.52E-04
21	GO:0052833: inositol monophosphate 4-phosphatase activity	2.52E-04
22	GO:0030385: ferredoxin:thioredoxin reductase activity	2.52E-04
23	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.52E-04
24	GO:0004829: threonine-tRNA ligase activity	2.52E-04
25	GO:0019156: isoamylase activity	2.52E-04
26	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.52E-04
27	GO:0000234: phosphoethanolamine N-methyltransferase activity	2.52E-04
28	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.19E-04
29	GO:0004751: ribose-5-phosphate isomerase activity	4.19E-04
30	GO:0016149: translation release factor activity, codon specific	6.01E-04
31	GO:0001053: plastid sigma factor activity	7.98E-04
32	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.98E-04
33	GO:0008453: alanine-glyoxylate transaminase activity	7.98E-04
34	GO:0004045: aminoacyl-tRNA hydrolase activity	7.98E-04
35	GO:0016987: sigma factor activity	7.98E-04
36	GO:0004605: phosphatidate cytidylyltransferase activity	1.23E-03
37	GO:0004332: fructose-bisphosphate aldolase activity	1.23E-03
38	GO:0042578: phosphoric ester hydrolase activity	1.23E-03
39	GO:0004556: alpha-amylase activity	1.23E-03
40	GO:0004462: lactoylglutathione lyase activity	1.23E-03
41	GO:0008195: phosphatidate phosphatase activity	1.47E-03
42	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.47E-03
43	GO:0004033: aldo-keto reductase (NADP) activity	2.00E-03
44	GO:0003993: acid phosphatase activity	2.08E-03
45	GO:0003747: translation release factor activity	2.57E-03
46	GO:0016844: strictosidine synthase activity	2.88E-03
47	GO:0005381: iron ion transmembrane transporter activity	2.88E-03
48	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.97E-03
49	GO:0004089: carbonate dehydratase activity	4.23E-03
50	GO:0008083: growth factor activity	4.59E-03
51	GO:0005528: FK506 binding	5.75E-03
52	GO:0005345: purine nucleobase transmembrane transporter activity	6.15E-03
53	GO:0003743: translation initiation factor activity	9.81E-03
54	GO:0042802: identical protein binding	1.07E-02
55	GO:0048038: quinone binding	1.07E-02
56	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.62E-02
57	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.68E-02
58	GO:0030145: manganese ion binding	1.86E-02
59	GO:0050661: NADP binding	2.18E-02
60	GO:0051537: 2 iron, 2 sulfur cluster binding	2.52E-02
61	GO:0005198: structural molecule activity	2.59E-02
62	GO:0051287: NAD binding	2.73E-02
63	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.94E-02
64	GO:0015035: protein disulfide oxidoreductase activity	3.86E-02
65	GO:0019843: rRNA binding	4.44E-02
66	GO:0016829: lyase activity	4.69E-02
67	GO:0004252: serine-type endopeptidase activity	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0009349: riboflavin synthase complex	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009507: chloroplast	1.80E-32
4	GO:0009535: chloroplast thylakoid membrane	1.28E-19
5	GO:0009570: chloroplast stroma	8.05E-12
6	GO:0009523: photosystem II	1.77E-08
7	GO:0009534: chloroplast thylakoid	5.30E-08
8	GO:0009941: chloroplast envelope	8.54E-08
9	GO:0009538: photosystem I reaction center	6.31E-07
10	GO:0009543: chloroplast thylakoid lumen	5.05E-06
11	GO:0030095: chloroplast photosystem II	6.46E-06
12	GO:0010287: plastoglobule	7.71E-05
13	GO:0009579: thylakoid	8.42E-05
14	GO:0042651: thylakoid membrane	3.94E-04
15	GO:0031897: Tic complex	7.98E-04
16	GO:0009533: chloroplast stromal thylakoid	1.73E-03
17	GO:0031977: thylakoid lumen	2.36E-03
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.57E-03
19	GO:0032040: small-subunit processome	3.87E-03
20	GO:0009508: plastid chromosome	4.23E-03
21	GO:0009654: photosystem II oxygen evolving complex	6.15E-03
22	GO:0019898: extrinsic component of membrane	1.02E-02
23	GO:0005778: peroxisomal membrane	1.28E-02
24	GO:0009295: nucleoid	1.28E-02
25	GO:0030529: intracellular ribonucleoprotein complex	1.39E-02
26	GO:0031969: chloroplast membrane	1.62E-02
27	GO:0009706: chloroplast inner membrane	3.78E-02