Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G01080

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
3GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
8GO:0090042: tubulin deacetylation0.00E+00
9GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
10GO:0006114: glycerol biosynthetic process0.00E+00
11GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
12GO:0006399: tRNA metabolic process0.00E+00
13GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
14GO:0070125: mitochondrial translational elongation0.00E+00
15GO:0006429: leucyl-tRNA aminoacylation0.00E+00
16GO:0015979: photosynthesis6.79E-15
17GO:0010027: thylakoid membrane organization1.86E-09
18GO:0090391: granum assembly2.62E-08
19GO:1902326: positive regulation of chlorophyll biosynthetic process3.71E-06
20GO:0018298: protein-chromophore linkage4.75E-06
21GO:0009642: response to light intensity6.91E-06
22GO:0009793: embryo development ending in seed dormancy2.17E-05
23GO:0018119: peptidyl-cysteine S-nitrosylation3.13E-05
24GO:0006021: inositol biosynthetic process5.37E-05
25GO:0010207: photosystem II assembly5.88E-05
26GO:0010236: plastoquinone biosynthetic process8.49E-05
27GO:0046855: inositol phosphate dephosphorylation1.23E-04
28GO:0042549: photosystem II stabilization1.23E-04
29GO:0010196: nonphotochemical quenching2.21E-04
30GO:0048564: photosystem I assembly2.80E-04
31GO:0000476: maturation of 4.5S rRNA2.84E-04
32GO:0009443: pyridoxal 5'-phosphate salvage2.84E-04
33GO:0000967: rRNA 5'-end processing2.84E-04
34GO:0006438: valyl-tRNA aminoacylation2.84E-04
35GO:0043953: protein transport by the Tat complex2.84E-04
36GO:0000481: maturation of 5S rRNA2.84E-04
37GO:0042371: vitamin K biosynthetic process2.84E-04
38GO:0065002: intracellular protein transmembrane transport2.84E-04
39GO:0043686: co-translational protein modification2.84E-04
40GO:0046167: glycerol-3-phosphate biosynthetic process2.84E-04
41GO:0043007: maintenance of rDNA2.84E-04
42GO:1902458: positive regulation of stomatal opening2.84E-04
43GO:0034337: RNA folding2.84E-04
44GO:0010729: positive regulation of hydrogen peroxide biosynthetic process2.84E-04
45GO:0006419: alanyl-tRNA aminoacylation2.84E-04
46GO:0032544: plastid translation3.44E-04
47GO:0010206: photosystem II repair4.15E-04
48GO:0009658: chloroplast organization5.23E-04
49GO:0006432: phenylalanyl-tRNA aminoacylation6.25E-04
50GO:0018026: peptidyl-lysine monomethylation6.25E-04
51GO:0000256: allantoin catabolic process6.25E-04
52GO:0006650: glycerophospholipid metabolic process6.25E-04
53GO:0006729: tetrahydrobiopterin biosynthetic process6.25E-04
54GO:1903426: regulation of reactive oxygen species biosynthetic process6.25E-04
55GO:0006568: tryptophan metabolic process6.25E-04
56GO:0030388: fructose 1,6-bisphosphate metabolic process6.25E-04
57GO:0034470: ncRNA processing6.25E-04
58GO:0010275: NAD(P)H dehydrogenase complex assembly6.25E-04
59GO:0009773: photosynthetic electron transport in photosystem I6.61E-04
60GO:0043085: positive regulation of catalytic activity6.61E-04
61GO:0015995: chlorophyll biosynthetic process6.98E-04
62GO:0016311: dephosphorylation7.45E-04
63GO:0006790: sulfur compound metabolic process7.56E-04
64GO:0019253: reductive pentose-phosphate cycle9.62E-04
65GO:0006000: fructose metabolic process1.01E-03
66GO:0046168: glycerol-3-phosphate catabolic process1.01E-03
67GO:0010136: ureide catabolic process1.01E-03
68GO:0071492: cellular response to UV-A1.01E-03
69GO:0005977: glycogen metabolic process1.01E-03
70GO:0046854: phosphatidylinositol phosphorylation1.07E-03
71GO:0009052: pentose-phosphate shunt, non-oxidative branch1.45E-03
72GO:0006418: tRNA aminoacylation for protein translation1.45E-03
73GO:0006072: glycerol-3-phosphate metabolic process1.45E-03
74GO:0006145: purine nucleobase catabolic process1.45E-03
75GO:0009768: photosynthesis, light harvesting in photosystem I1.45E-03
76GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.45E-03
77GO:2001141: regulation of RNA biosynthetic process1.45E-03
78GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.45E-03
79GO:0006020: inositol metabolic process1.45E-03
80GO:0061077: chaperone-mediated protein folding1.60E-03
81GO:0009765: photosynthesis, light harvesting1.94E-03
82GO:0006109: regulation of carbohydrate metabolic process1.94E-03
83GO:0045727: positive regulation of translation1.94E-03
84GO:0015994: chlorophyll metabolic process1.94E-03
85GO:0006546: glycine catabolic process1.94E-03
86GO:0010021: amylopectin biosynthetic process1.94E-03
87GO:0071486: cellular response to high light intensity1.94E-03
88GO:0032543: mitochondrial translation2.48E-03
89GO:0045038: protein import into chloroplast thylakoid membrane2.48E-03
90GO:0031365: N-terminal protein amino acid modification2.48E-03
91GO:0006662: glycerol ether metabolic process2.61E-03
92GO:0019252: starch biosynthetic process3.01E-03
93GO:0042793: transcription from plastid promoter3.06E-03
94GO:0009117: nucleotide metabolic process3.06E-03
95GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.06E-03
96GO:0042372: phylloquinone biosynthetic process3.68E-03
97GO:0010189: vitamin E biosynthetic process3.68E-03
98GO:0009645: response to low light intensity stimulus4.34E-03
99GO:0006400: tRNA modification4.34E-03
100GO:0009772: photosynthetic electron transport in photosystem II4.34E-03
101GO:0032508: DNA duplex unwinding5.03E-03
102GO:2000070: regulation of response to water deprivation5.03E-03
103GO:0000105: histidine biosynthetic process5.03E-03
104GO:0009231: riboflavin biosynthetic process5.03E-03
105GO:0016559: peroxisome fission5.03E-03
106GO:0006002: fructose 6-phosphate metabolic process5.77E-03
107GO:0071482: cellular response to light stimulus5.77E-03
108GO:0015996: chlorophyll catabolic process5.77E-03
109GO:0007186: G-protein coupled receptor signaling pathway5.77E-03
110GO:0009657: plastid organization5.77E-03
111GO:0017004: cytochrome complex assembly5.77E-03
112GO:0006779: porphyrin-containing compound biosynthetic process7.35E-03
113GO:0009637: response to blue light7.68E-03
114GO:0034599: cellular response to oxidative stress8.04E-03
115GO:0006412: translation8.14E-03
116GO:0006782: protoporphyrinogen IX biosynthetic process8.19E-03
117GO:0019684: photosynthesis, light reaction9.06E-03
118GO:0009089: lysine biosynthetic process via diaminopimelate9.06E-03
119GO:0072593: reactive oxygen species metabolic process9.06E-03
120GO:0009073: aromatic amino acid family biosynthetic process9.06E-03
121GO:0006352: DNA-templated transcription, initiation9.06E-03
122GO:0000272: polysaccharide catabolic process9.06E-03
123GO:0006415: translational termination9.06E-03
124GO:0010114: response to red light9.92E-03
125GO:0005983: starch catabolic process9.96E-03
126GO:0045037: protein import into chloroplast stroma9.96E-03
127GO:0009644: response to high light intensity1.07E-02
128GO:0006006: glucose metabolic process1.09E-02
129GO:0006094: gluconeogenesis1.09E-02
130GO:0005986: sucrose biosynthetic process1.09E-02
131GO:0006855: drug transmembrane transport1.16E-02
132GO:0010020: chloroplast fission1.19E-02
133GO:0019853: L-ascorbic acid biosynthetic process1.29E-02
134GO:0006364: rRNA processing1.34E-02
135GO:0000162: tryptophan biosynthetic process1.39E-02
136GO:0080167: response to karrikin1.54E-02
137GO:0006096: glycolytic process1.59E-02
138GO:0019953: sexual reproduction1.60E-02
139GO:0008299: isoprenoid biosynthetic process1.60E-02
140GO:0016575: histone deacetylation1.60E-02
141GO:0019915: lipid storage1.72E-02
142GO:0009561: megagametogenesis2.07E-02
143GO:0055085: transmembrane transport2.15E-02
144GO:0016117: carotenoid biosynthetic process2.19E-02
145GO:0006457: protein folding2.21E-02
146GO:0042631: cellular response to water deprivation2.31E-02
147GO:0000413: protein peptidyl-prolyl isomerization2.31E-02
148GO:0009409: response to cold2.37E-02
149GO:0032259: methylation2.38E-02
150GO:0006520: cellular amino acid metabolic process2.44E-02
151GO:0010182: sugar mediated signaling pathway2.44E-02
152GO:0008654: phospholipid biosynthetic process2.70E-02
153GO:0055072: iron ion homeostasis2.70E-02
154GO:0055114: oxidation-reduction process2.77E-02
155GO:0071554: cell wall organization or biogenesis2.83E-02
156GO:0002229: defense response to oomycetes2.83E-02
157GO:0006413: translational initiation3.08E-02
158GO:0009567: double fertilization forming a zygote and endosperm3.25E-02
159GO:0007623: circadian rhythm3.31E-02
160GO:0042128: nitrate assimilation3.98E-02
161GO:0009817: defense response to fungus, incompatible interaction4.45E-02
162GO:0009735: response to cytokinin4.57E-02
163GO:0009813: flavonoid biosynthetic process4.60E-02
164GO:0010218: response to far red light4.76E-02
165GO:0007568: aging4.93E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
4GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
5GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
6GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
7GO:0051721: protein phosphatase 2A binding0.00E+00
8GO:0042903: tubulin deacetylase activity0.00E+00
9GO:0043014: alpha-tubulin binding0.00E+00
10GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
11GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
12GO:0004760: serine-pyruvate transaminase activity0.00E+00
13GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
14GO:0004823: leucine-tRNA ligase activity0.00E+00
15GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
16GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
17GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
18GO:0050281: serine-glyoxylate transaminase activity0.00E+00
19GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
20GO:0043136: glycerol-3-phosphatase activity0.00E+00
21GO:0000121: glycerol-1-phosphatase activity0.00E+00
22GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.03E-09
23GO:0005528: FK506 binding6.51E-08
24GO:0016168: chlorophyll binding2.73E-06
25GO:0052832: inositol monophosphate 3-phosphatase activity3.71E-06
26GO:0008934: inositol monophosphate 1-phosphatase activity3.71E-06
27GO:0052833: inositol monophosphate 4-phosphatase activity3.71E-06
28GO:0019843: rRNA binding1.17E-05
29GO:0070402: NADPH binding1.33E-05
30GO:0043495: protein anchor5.37E-05
31GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.69E-04
32GO:0022891: substrate-specific transmembrane transporter activity1.70E-04
33GO:0019899: enzyme binding2.21E-04
34GO:0050308: sugar-phosphatase activity2.84E-04
35GO:0004813: alanine-tRNA ligase activity2.84E-04
36GO:0019203: carbohydrate phosphatase activity2.84E-04
37GO:0042586: peptide deformylase activity2.84E-04
38GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.84E-04
39GO:0004832: valine-tRNA ligase activity2.84E-04
40GO:0010347: L-galactose-1-phosphate phosphatase activity2.84E-04
41GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.84E-04
42GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.84E-04
43GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity2.84E-04
44GO:0004425: indole-3-glycerol-phosphate synthase activity2.84E-04
45GO:0008047: enzyme activator activity5.73E-04
46GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.25E-04
47GO:0019156: isoamylase activity6.25E-04
48GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.25E-04
49GO:0004826: phenylalanine-tRNA ligase activity6.25E-04
50GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.25E-04
51GO:0047746: chlorophyllase activity6.25E-04
52GO:0010297: heteropolysaccharide binding6.25E-04
53GO:0009977: proton motive force dependent protein transmembrane transporter activity6.25E-04
54GO:0004047: aminomethyltransferase activity6.25E-04
55GO:0000049: tRNA binding7.56E-04
56GO:0031072: heat shock protein binding8.57E-04
57GO:0005504: fatty acid binding1.01E-03
58GO:0003913: DNA photolyase activity1.01E-03
59GO:0002161: aminoacyl-tRNA editing activity1.01E-03
60GO:0004751: ribose-5-phosphate isomerase activity1.01E-03
61GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.01E-03
62GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.01E-03
63GO:0031409: pigment binding1.19E-03
64GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.45E-03
65GO:0035529: NADH pyrophosphatase activity1.45E-03
66GO:0048487: beta-tubulin binding1.45E-03
67GO:0004792: thiosulfate sulfurtransferase activity1.45E-03
68GO:0016149: translation release factor activity, codon specific1.45E-03
69GO:0016851: magnesium chelatase activity1.45E-03
70GO:0042802: identical protein binding1.86E-03
71GO:0008453: alanine-glyoxylate transaminase activity1.94E-03
72GO:0004045: aminoacyl-tRNA hydrolase activity1.94E-03
73GO:0080032: methyl jasmonate esterase activity1.94E-03
74GO:0016987: sigma factor activity1.94E-03
75GO:0045430: chalcone isomerase activity1.94E-03
76GO:0004659: prenyltransferase activity1.94E-03
77GO:0016279: protein-lysine N-methyltransferase activity1.94E-03
78GO:0001053: plastid sigma factor activity1.94E-03
79GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.94E-03
80GO:0047134: protein-disulfide reductase activity2.24E-03
81GO:0004812: aminoacyl-tRNA ligase activity2.24E-03
82GO:0004791: thioredoxin-disulfide reductase activity2.80E-03
83GO:0004556: alpha-amylase activity3.06E-03
84GO:0016462: pyrophosphatase activity3.06E-03
85GO:0042578: phosphoric ester hydrolase activity3.06E-03
86GO:2001070: starch binding3.06E-03
87GO:0080030: methyl indole-3-acetate esterase activity3.06E-03
88GO:0051082: unfolded protein binding3.34E-03
89GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.66E-03
90GO:0008483: transaminase activity4.14E-03
91GO:0009881: photoreceptor activity4.34E-03
92GO:0004033: aldo-keto reductase (NADP) activity5.03E-03
93GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)5.77E-03
94GO:0015238: drug transmembrane transporter activity6.37E-03
95GO:0008138: protein tyrosine/serine/threonine phosphatase activity6.54E-03
96GO:0003747: translation release factor activity6.54E-03
97GO:0003993: acid phosphatase activity8.04E-03
98GO:0051537: 2 iron, 2 sulfur cluster binding1.07E-02
99GO:0004565: beta-galactosidase activity1.09E-02
100GO:0005198: structural molecule activity1.12E-02
101GO:0051287: NAD binding1.20E-02
102GO:0046872: metal ion binding1.42E-02
103GO:0004857: enzyme inhibitor activity1.50E-02
104GO:0004407: histone deacetylase activity1.50E-02
105GO:0043424: protein histidine kinase binding1.60E-02
106GO:0003735: structural constituent of ribosome1.69E-02
107GO:0016787: hydrolase activity1.95E-02
108GO:0015035: protein disulfide oxidoreductase activity1.97E-02
109GO:0003756: protein disulfide isomerase activity2.07E-02
110GO:0016491: oxidoreductase activity2.26E-02
111GO:0003924: GTPase activity2.52E-02
112GO:0050662: coenzyme binding2.57E-02
113GO:0016853: isomerase activity2.57E-02
114GO:0048038: quinone binding2.83E-02
115GO:0015297: antiporter activity3.16E-02
116GO:0016413: O-acetyltransferase activity3.54E-02
117GO:0016597: amino acid binding3.54E-02
118GO:0005509: calcium ion binding3.79E-02
119GO:0003743: translation initiation factor activity3.86E-02
120GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.29E-02
121GO:0008168: methyltransferase activity4.90E-02
122GO:0030145: manganese ion binding4.93E-02
123GO:0000287: magnesium ion binding4.99E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0009349: riboflavin synthase complex0.00E+00
4GO:0043235: receptor complex0.00E+00
5GO:0009507: chloroplast5.15E-87
6GO:0009535: chloroplast thylakoid membrane3.24E-45
7GO:0009570: chloroplast stroma3.42E-40
8GO:0009534: chloroplast thylakoid6.66E-32
9GO:0009941: chloroplast envelope1.49E-22
10GO:0009543: chloroplast thylakoid lumen3.27E-20
11GO:0009579: thylakoid1.40E-16
12GO:0031977: thylakoid lumen4.69E-13
13GO:0009523: photosystem II1.71E-08
14GO:0030095: chloroplast photosystem II1.56E-06
15GO:0000427: plastid-encoded plastid RNA polymerase complex3.71E-06
16GO:0009654: photosystem II oxygen evolving complex4.20E-06
17GO:0010287: plastoglobule1.00E-05
18GO:0019898: extrinsic component of membrane2.07E-05
19GO:0009538: photosystem I reaction center2.80E-04
20GO:0009782: photosystem I antenna complex2.84E-04
21GO:0031361: integral component of thylakoid membrane2.84E-04
22GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.15E-04
23GO:0005840: ribosome4.42E-04
24GO:0009508: plastid chromosome8.57E-04
25GO:0009528: plastid inner membrane1.01E-03
26GO:0033281: TAT protein transport complex1.01E-03
27GO:0010007: magnesium chelatase complex1.01E-03
28GO:0030076: light-harvesting complex1.07E-03
29GO:0042651: thylakoid membrane1.45E-03
30GO:0009331: glycerol-3-phosphate dehydrogenase complex1.45E-03
31GO:0009527: plastid outer membrane1.94E-03
32GO:0031969: chloroplast membrane3.49E-03
33GO:0016272: prefoldin complex3.68E-03
34GO:0009295: nucleoid4.14E-03
35GO:0010319: stromule4.14E-03
36GO:0009533: chloroplast stromal thylakoid4.34E-03
37GO:0009707: chloroplast outer membrane6.06E-03
38GO:0012511: monolayer-surrounded lipid storage body9.06E-03
39GO:0032040: small-subunit processome9.96E-03
40GO:0015935: small ribosomal subunit1.72E-02
41GO:0009532: plastid stroma1.72E-02
42GO:0009706: chloroplast inner membrane1.91E-02
43GO:0048046: apoplast2.16E-02
44GO:0005623: cell2.46E-02
45GO:0009522: photosystem I2.57E-02
46GO:0005759: mitochondrial matrix3.01E-02
47GO:0030529: intracellular ribonucleoprotein complex3.68E-02
48GO:0016021: integral component of membrane4.41E-02
49GO:0022626: cytosolic ribosome4.83E-02
50GO:0016020: membrane4.90E-02
51GO:0015934: large ribosomal subunit4.93E-02
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Gene type



Gene DE type