co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G01060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010243: response to organonitrogen compound	0.00E+00
2	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
3	GO:0071483: cellular response to blue light	2.47E-08
4	GO:0010100: negative regulation of photomorphogenesis	7.48E-07
5	GO:0007623: circadian rhythm	8.34E-06
6	GO:0010236: plastoquinone biosynthetic process	1.46E-05
7	GO:0009909: regulation of flower development	2.72E-05
8	GO:0046467: membrane lipid biosynthetic process	9.88E-05
9	GO:0080183: response to photooxidative stress	2.32E-04
10	GO:0043100: pyrimidine nucleobase salvage	2.32E-04
11	GO:0042754: negative regulation of circadian rhythm	2.32E-04
12	GO:0006898: receptor-mediated endocytosis	2.32E-04
13	GO:0043496: regulation of protein homodimerization activity	2.32E-04
14	GO:0009658: chloroplast organization	2.56E-04
15	GO:0008299: isoprenoid biosynthetic process	3.49E-04
16	GO:0071230: cellular response to amino acid stimulus	3.86E-04
17	GO:1901562: response to paraquat	3.86E-04
18	GO:0044375: regulation of peroxisome size	3.86E-04
19	GO:0016570: histone modification	3.86E-04
20	GO:0019419: sulfate reduction	3.86E-04
21	GO:0055114: oxidation-reduction process	3.87E-04
22	GO:2001141: regulation of RNA biosynthetic process	5.54E-04
23	GO:0010148: transpiration	5.54E-04
24	GO:0009902: chloroplast relocation	7.37E-04
25	GO:0010021: amylopectin biosynthetic process	7.37E-04
26	GO:0010600: regulation of auxin biosynthetic process	7.37E-04
27	GO:0071585: detoxification of cadmium ion	7.37E-04
28	GO:0009904: chloroplast accumulation movement	9.32E-04
29	GO:0048317: seed morphogenesis	1.14E-03
30	GO:0009903: chloroplast avoidance movement	1.36E-03
31	GO:0010189: vitamin E biosynthetic process	1.36E-03
32	GO:0009648: photoperiodism	1.36E-03
33	GO:0080060: integument development	1.36E-03
34	GO:0009416: response to light stimulus	1.56E-03
35	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.59E-03
36	GO:0045995: regulation of embryonic development	1.59E-03
37	GO:0006368: transcription elongation from RNA polymerase II promoter	1.59E-03
38	GO:0019745: pentacyclic triterpenoid biosynthetic process	1.59E-03
39	GO:0070370: cellular heat acclimation	1.59E-03
40	GO:0031540: regulation of anthocyanin biosynthetic process	1.84E-03
41	GO:0016559: peroxisome fission	1.84E-03
42	GO:0030091: protein repair	1.84E-03
43	GO:0015996: chlorophyll catabolic process	2.10E-03
44	GO:0048574: long-day photoperiodism, flowering	2.10E-03
45	GO:0006355: regulation of transcription, DNA-templated	2.25E-03
46	GO:0009640: photomorphogenesis	2.27E-03
47	GO:0034765: regulation of ion transmembrane transport	2.37E-03
48	GO:0015979: photosynthesis	2.74E-03
49	GO:0045454: cell redox homeostasis	2.91E-03
50	GO:0000103: sulfate assimilation	2.95E-03
51	GO:0051555: flavonol biosynthetic process	2.95E-03
52	GO:0009970: cellular response to sulfate starvation	2.95E-03
53	GO:0006995: cellular response to nitrogen starvation	2.95E-03
54	GO:0006352: DNA-templated transcription, initiation	3.25E-03
55	GO:0000272: polysaccharide catabolic process	3.25E-03
56	GO:0016485: protein processing	3.25E-03
57	GO:0006816: calcium ion transport	3.25E-03
58	GO:0009773: photosynthetic electron transport in photosystem I	3.25E-03
59	GO:0009785: blue light signaling pathway	3.89E-03
60	GO:0009753: response to jasmonic acid	4.15E-03
61	GO:0007015: actin filament organization	4.22E-03
62	GO:0010207: photosystem II assembly	4.22E-03
63	GO:0009624: response to nematode	4.31E-03
64	GO:0007031: peroxisome organization	4.57E-03
65	GO:0051017: actin filament bundle assembly	5.28E-03
66	GO:0019344: cysteine biosynthetic process	5.28E-03
67	GO:0006874: cellular calcium ion homeostasis	5.65E-03
68	GO:0010017: red or far-red light signaling pathway	6.42E-03
69	GO:0006351: transcription, DNA-templated	6.48E-03
70	GO:0040007: growth	6.82E-03
71	GO:0042631: cellular response to water deprivation	8.07E-03
72	GO:0042391: regulation of membrane potential	8.07E-03
73	GO:0009739: response to gibberellin	8.31E-03
74	GO:0010182: sugar mediated signaling pathway	8.50E-03
75	GO:0009741: response to brassinosteroid	8.50E-03
76	GO:0045893: positive regulation of transcription, DNA-templated	9.37E-03
77	GO:0019252: starch biosynthetic process	9.39E-03
78	GO:0009851: auxin biosynthetic process	9.39E-03
79	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	9.85E-03
80	GO:0009630: gravitropism	1.03E-02
81	GO:0006464: cellular protein modification process	1.13E-02
82	GO:0009567: double fertilization forming a zygote and endosperm	1.13E-02
83	GO:0071805: potassium ion transmembrane transport	1.18E-02
84	GO:0016126: sterol biosynthetic process	1.28E-02
85	GO:0009723: response to ethylene	1.33E-02
86	GO:0042128: nitrate assimilation	1.38E-02
87	GO:0080167: response to karrikin	1.43E-02
88	GO:0015995: chlorophyll biosynthetic process	1.43E-02
89	GO:0018298: protein-chromophore linkage	1.54E-02
90	GO:0008219: cell death	1.54E-02
91	GO:0009813: flavonoid biosynthetic process	1.60E-02
92	GO:0010218: response to far red light	1.65E-02
93	GO:0006811: ion transport	1.65E-02
94	GO:0045892: negative regulation of transcription, DNA-templated	1.74E-02
95	GO:0006865: amino acid transport	1.76E-02
96	GO:0045087: innate immune response	1.82E-02
97	GO:0009637: response to blue light	1.82E-02
98	GO:0034599: cellular response to oxidative stress	1.88E-02
99	GO:0009751: response to salicylic acid	2.08E-02
100	GO:0042542: response to hydrogen peroxide	2.12E-02
101	GO:0010114: response to red light	2.18E-02
102	GO:0008152: metabolic process	2.33E-02
103	GO:0009585: red, far-red light phototransduction	2.70E-02
104	GO:0010224: response to UV-B	2.77E-02
105	GO:0006857: oligopeptide transport	2.83E-02
106	GO:0035556: intracellular signal transduction	3.95E-02
107	GO:0042744: hydrogen peroxide catabolic process	4.46E-02
108	GO:0016036: cellular response to phosphate starvation	4.86E-02
109	GO:0009737: response to abscisic acid	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
2	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
3	GO:0000250: lanosterol synthase activity	0.00E+00
4	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
5	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
6	GO:0050347: trans-octaprenyltranstransferase activity	5.13E-07
7	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	5.13E-07
8	GO:0000989: transcription factor activity, transcription factor binding	1.07E-06
9	GO:0008106: alcohol dehydrogenase (NADP+) activity	4.63E-06
10	GO:0016491: oxidoreductase activity	9.16E-06
11	GO:0004328: formamidase activity	9.88E-05
12	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	9.88E-05
13	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	9.88E-05
14	GO:0008066: glutamate receptor activity	9.88E-05
15	GO:0019904: protein domain specific binding	1.48E-04
16	GO:0042802: identical protein binding	1.85E-04
17	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	2.32E-04
18	GO:0033201: alpha-1,4-glucan synthase activity	2.32E-04
19	GO:0015173: aromatic amino acid transmembrane transporter activity	2.32E-04
20	GO:0009973: adenylyl-sulfate reductase activity	2.32E-04
21	GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding	2.32E-04
22	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	2.32E-04
23	GO:0004096: catalase activity	3.86E-04
24	GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding	3.86E-04
25	GO:0004180: carboxypeptidase activity	3.86E-04
26	GO:0004373: glycogen (starch) synthase activity	3.86E-04
27	GO:0003913: DNA photolyase activity	3.86E-04
28	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.64E-04
29	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	5.54E-04
30	GO:0015175: neutral amino acid transmembrane transporter activity	5.54E-04
31	GO:0009011: starch synthase activity	7.37E-04
32	GO:0001053: plastid sigma factor activity	7.37E-04
33	GO:0016987: sigma factor activity	7.37E-04
34	GO:0004506: squalene monooxygenase activity	7.37E-04
35	GO:0016866: intramolecular transferase activity	7.37E-04
36	GO:0045431: flavonol synthase activity	9.32E-04
37	GO:0004709: MAP kinase kinase kinase activity	1.14E-03
38	GO:0008236: serine-type peptidase activity	1.33E-03
39	GO:0005242: inward rectifier potassium channel activity	1.36E-03
40	GO:0016161: beta-amylase activity	1.36E-03
41	GO:0009881: photoreceptor activity	1.59E-03
42	GO:0030674: protein binding, bridging	1.84E-03
43	GO:0008270: zinc ion binding	3.76E-03
44	GO:0005262: calcium channel activity	3.89E-03
45	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.89E-03
46	GO:0004970: ionotropic glutamate receptor activity	4.57E-03
47	GO:0005217: intracellular ligand-gated ion channel activity	4.57E-03
48	GO:0030570: pectate lyase activity	6.82E-03
49	GO:0005249: voltage-gated potassium channel activity	8.07E-03
50	GO:0030551: cyclic nucleotide binding	8.07E-03
51	GO:0004527: exonuclease activity	8.50E-03
52	GO:0010181: FMN binding	8.94E-03
53	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.08E-02
54	GO:0016791: phosphatase activity	1.13E-02
55	GO:0004721: phosphoprotein phosphatase activity	1.43E-02
56	GO:0030145: manganese ion binding	1.71E-02
57	GO:0050897: cobalt ion binding	1.71E-02
58	GO:0004871: signal transducer activity	1.80E-02
59	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.94E-02
60	GO:0003677: DNA binding	2.04E-02
61	GO:0015293: symporter activity	2.37E-02
62	GO:0005515: protein binding	2.44E-02
63	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.70E-02
64	GO:0015171: amino acid transmembrane transporter activity	2.90E-02
65	GO:0004672: protein kinase activity	3.11E-02
66	GO:0015035: protein disulfide oxidoreductase activity	3.54E-02
67	GO:0016787: hydrolase activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0031313: extrinsic component of endosome membrane	0.00E+00
2	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	9.88E-05
3	GO:0009526: plastid envelope	7.37E-04
4	GO:0016593: Cdc73/Paf1 complex	7.37E-04
5	GO:0031982: vesicle	1.84E-03
6	GO:0009501: amyloplast	1.84E-03
7	GO:0005777: peroxisome	1.92E-03
8	GO:0009514: glyoxysome	2.10E-03
9	GO:0005779: integral component of peroxisomal membrane	2.10E-03
10	GO:0005884: actin filament	3.25E-03
11	GO:0009532: plastid stroma	6.03E-03
12	GO:0005778: peroxisomal membrane	1.18E-02
13	GO:0010319: stromule	1.18E-02
14	GO:0031969: chloroplast membrane	1.43E-02
15	GO:0009507: chloroplast	1.46E-02
16	GO:0005834: heterotrimeric G-protein complex	3.18E-02
17	GO:0010287: plastoglobule	3.92E-02
18	GO:0009543: chloroplast thylakoid lumen	4.07E-02