Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G66590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071311: cellular response to acetate0.00E+00
2GO:0015843: methylammonium transport0.00E+00
3GO:0070979: protein K11-linked ubiquitination0.00E+00
4GO:0071260: cellular response to mechanical stimulus0.00E+00
5GO:0043488: regulation of mRNA stability0.00E+00
6GO:0061157: mRNA destabilization0.00E+00
7GO:0046460: neutral lipid biosynthetic process0.00E+00
8GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
9GO:0090706: specification of plant organ position0.00E+00
10GO:0031116: positive regulation of microtubule polymerization0.00E+00
11GO:0010068: protoderm histogenesis0.00E+00
12GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
13GO:0007037: vacuolar phosphate transport0.00E+00
14GO:0042817: pyridoxal metabolic process0.00E+00
15GO:0007638: mechanosensory behavior0.00E+00
16GO:2001294: malonyl-CoA catabolic process0.00E+00
17GO:0009733: response to auxin3.00E-08
18GO:0010158: abaxial cell fate specification5.82E-06
19GO:0009734: auxin-activated signaling pathway6.03E-06
20GO:0046620: regulation of organ growth4.20E-05
21GO:0040008: regulation of growth6.30E-05
22GO:0051322: anaphase1.83E-04
23GO:1902183: regulation of shoot apical meristem development2.77E-04
24GO:0045038: protein import into chloroplast thylakoid membrane2.77E-04
25GO:1902458: positive regulation of stomatal opening5.92E-04
26GO:0006177: GMP biosynthetic process5.92E-04
27GO:0010450: inflorescence meristem growth5.92E-04
28GO:0051418: microtubule nucleation by microtubule organizing center5.92E-04
29GO:0051171: regulation of nitrogen compound metabolic process5.92E-04
30GO:0071028: nuclear mRNA surveillance5.92E-04
31GO:0043266: regulation of potassium ion transport5.92E-04
32GO:0006659: phosphatidylserine biosynthetic process5.92E-04
33GO:0043087: regulation of GTPase activity5.92E-04
34GO:2000021: regulation of ion homeostasis5.92E-04
35GO:0006264: mitochondrial DNA replication5.92E-04
36GO:0033259: plastid DNA replication5.92E-04
37GO:0034080: CENP-A containing nucleosome assembly5.92E-04
38GO:0000066: mitochondrial ornithine transport5.92E-04
39GO:2000024: regulation of leaf development1.19E-03
40GO:1903426: regulation of reactive oxygen species biosynthetic process1.27E-03
41GO:0015804: neutral amino acid transport1.27E-03
42GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.27E-03
43GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole1.27E-03
44GO:0010115: regulation of abscisic acid biosynthetic process1.27E-03
45GO:0006739: NADP metabolic process1.27E-03
46GO:1900871: chloroplast mRNA modification1.27E-03
47GO:0034475: U4 snRNA 3'-end processing1.27E-03
48GO:0033566: gamma-tubulin complex localization1.27E-03
49GO:0007154: cell communication1.27E-03
50GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation1.27E-03
51GO:1900033: negative regulation of trichome patterning1.27E-03
52GO:0031125: rRNA 3'-end processing1.27E-03
53GO:1900865: chloroplast RNA modification1.41E-03
54GO:0006816: calcium ion transport1.91E-03
55GO:0007275: multicellular organism development1.98E-03
56GO:0007052: mitotic spindle organization2.10E-03
57GO:0016075: rRNA catabolic process2.10E-03
58GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'2.10E-03
59GO:0051127: positive regulation of actin nucleation2.10E-03
60GO:0019419: sulfate reduction2.10E-03
61GO:0071230: cellular response to amino acid stimulus2.10E-03
62GO:0031145: anaphase-promoting complex-dependent catabolic process2.10E-03
63GO:0009150: purine ribonucleotide metabolic process2.10E-03
64GO:0006753: nucleoside phosphate metabolic process2.10E-03
65GO:0001578: microtubule bundle formation2.10E-03
66GO:0045493: xylan catabolic process2.10E-03
67GO:0006760: folic acid-containing compound metabolic process2.10E-03
68GO:0045165: cell fate commitment2.10E-03
69GO:2000012: regulation of auxin polar transport2.49E-03
70GO:0010020: chloroplast fission2.81E-03
71GO:0006166: purine ribonucleoside salvage3.04E-03
72GO:0007231: osmosensory signaling pathway3.04E-03
73GO:0030071: regulation of mitotic metaphase/anaphase transition3.04E-03
74GO:0051639: actin filament network formation3.04E-03
75GO:0009226: nucleotide-sugar biosynthetic process3.04E-03
76GO:0048645: animal organ formation3.04E-03
77GO:0008615: pyridoxine biosynthetic process3.04E-03
78GO:0010255: glucose mediated signaling pathway3.04E-03
79GO:0015696: ammonium transport3.04E-03
80GO:0044211: CTP salvage3.04E-03
81GO:0032981: mitochondrial respiratory chain complex I assembly3.04E-03
82GO:2000904: regulation of starch metabolic process3.04E-03
83GO:0090307: mitotic spindle assembly3.04E-03
84GO:0006168: adenine salvage3.04E-03
85GO:0006164: purine nucleotide biosynthetic process3.04E-03
86GO:0043572: plastid fission3.04E-03
87GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center3.04E-03
88GO:0034508: centromere complex assembly3.04E-03
89GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.04E-03
90GO:0009658: chloroplast organization3.65E-03
91GO:0019344: cysteine biosynthetic process3.90E-03
92GO:0009944: polarity specification of adaxial/abaxial axis3.90E-03
93GO:0010187: negative regulation of seed germination3.90E-03
94GO:0005992: trehalose biosynthetic process3.90E-03
95GO:0015846: polyamine transport4.10E-03
96GO:0051764: actin crosslink formation4.10E-03
97GO:0033500: carbohydrate homeostasis4.10E-03
98GO:0046656: folic acid biosynthetic process4.10E-03
99GO:0072488: ammonium transmembrane transport4.10E-03
100GO:0006021: inositol biosynthetic process4.10E-03
101GO:0022622: root system development4.10E-03
102GO:0006734: NADH metabolic process4.10E-03
103GO:0007020: microtubule nucleation4.10E-03
104GO:0044206: UMP salvage4.10E-03
105GO:0009165: nucleotide biosynthetic process4.10E-03
106GO:0048629: trichome patterning4.10E-03
107GO:0044209: AMP salvage5.27E-03
108GO:0046785: microtubule polymerization5.27E-03
109GO:0032876: negative regulation of DNA endoreduplication5.27E-03
110GO:0009926: auxin polar transport5.93E-03
111GO:0010264: myo-inositol hexakisphosphate biosynthetic process6.54E-03
112GO:0009959: negative gravitropism6.54E-03
113GO:0006655: phosphatidylglycerol biosynthetic process6.54E-03
114GO:0006139: nucleobase-containing compound metabolic process6.54E-03
115GO:0016554: cytidine to uridine editing6.54E-03
116GO:0009117: nucleotide metabolic process6.54E-03
117GO:0009920: cell plate formation involved in plant-type cell wall biogenesis6.54E-03
118GO:0006206: pyrimidine nucleobase metabolic process6.54E-03
119GO:0032973: amino acid export6.54E-03
120GO:0000741: karyogamy6.54E-03
121GO:0006561: proline biosynthetic process6.54E-03
122GO:0009789: positive regulation of abscisic acid-activated signaling pathway6.70E-03
123GO:0010087: phloem or xylem histogenesis7.25E-03
124GO:0009958: positive gravitropism7.82E-03
125GO:0010154: fruit development7.82E-03
126GO:0010182: sugar mediated signaling pathway7.82E-03
127GO:0080086: stamen filament development7.90E-03
128GO:0009648: photoperiodism7.90E-03
129GO:0042372: phylloquinone biosynthetic process7.90E-03
130GO:0009082: branched-chain amino acid biosynthetic process7.90E-03
131GO:0048280: vesicle fusion with Golgi apparatus7.90E-03
132GO:0046654: tetrahydrofolate biosynthetic process7.90E-03
133GO:0034389: lipid particle organization7.90E-03
134GO:0009099: valine biosynthetic process7.90E-03
135GO:0030488: tRNA methylation7.90E-03
136GO:0007166: cell surface receptor signaling pathway8.53E-03
137GO:0009585: red, far-red light phototransduction8.69E-03
138GO:0010161: red light signaling pathway9.35E-03
139GO:0048528: post-embryonic root development9.35E-03
140GO:0043090: amino acid import9.35E-03
141GO:0015937: coenzyme A biosynthetic process9.35E-03
142GO:0010050: vegetative phase change9.35E-03
143GO:0006400: tRNA modification9.35E-03
144GO:0030307: positive regulation of cell growth9.35E-03
145GO:0032880: regulation of protein localization9.35E-03
146GO:0010583: response to cyclopentenone1.04E-02
147GO:0007155: cell adhesion1.09E-02
148GO:0009850: auxin metabolic process1.09E-02
149GO:0009690: cytokinin metabolic process1.09E-02
150GO:0010078: maintenance of root meristem identity1.09E-02
151GO:0009704: de-etiolation1.09E-02
152GO:0032875: regulation of DNA endoreduplication1.09E-02
153GO:2000070: regulation of response to water deprivation1.09E-02
154GO:0042255: ribosome assembly1.09E-02
155GO:0006353: DNA-templated transcription, termination1.09E-02
156GO:0070413: trehalose metabolism in response to stress1.09E-02
157GO:0048367: shoot system development1.12E-02
158GO:0010093: specification of floral organ identity1.25E-02
159GO:0010099: regulation of photomorphogenesis1.25E-02
160GO:0006002: fructose 6-phosphate metabolic process1.25E-02
161GO:0009097: isoleucine biosynthetic process1.25E-02
162GO:0010100: negative regulation of photomorphogenesis1.25E-02
163GO:0006997: nucleus organization1.25E-02
164GO:0043562: cellular response to nitrogen levels1.25E-02
165GO:0009740: gibberellic acid mediated signaling pathway1.26E-02
166GO:0000910: cytokinesis1.33E-02
167GO:0015780: nucleotide-sugar transport1.43E-02
168GO:0080144: amino acid homeostasis1.43E-02
169GO:0006783: heme biosynthetic process1.43E-02
170GO:0019432: triglyceride biosynthetic process1.43E-02
171GO:0000373: Group II intron splicing1.43E-02
172GO:0006189: 'de novo' IMP biosynthetic process1.43E-02
173GO:0009627: systemic acquired resistance1.58E-02
174GO:0042761: very long-chain fatty acid biosynthetic process1.60E-02
175GO:0009638: phototropism1.60E-02
176GO:0000387: spliceosomal snRNP assembly1.60E-02
177GO:0009098: leucine biosynthetic process1.60E-02
178GO:0010018: far-red light signaling pathway1.60E-02
179GO:0010380: regulation of chlorophyll biosynthetic process1.60E-02
180GO:0071577: zinc II ion transmembrane transport1.60E-02
181GO:0006949: syncytium formation1.79E-02
182GO:0009299: mRNA transcription1.79E-02
183GO:0006535: cysteine biosynthetic process from serine1.79E-02
184GO:0006896: Golgi to vacuole transport1.79E-02
185GO:0000103: sulfate assimilation1.79E-02
186GO:0009688: abscisic acid biosynthetic process1.79E-02
187GO:0045036: protein targeting to chloroplast1.79E-02
188GO:0009684: indoleacetic acid biosynthetic process1.99E-02
189GO:0016310: phosphorylation1.99E-02
190GO:0009773: photosynthetic electron transport in photosystem I1.99E-02
191GO:1903507: negative regulation of nucleic acid-templated transcription1.99E-02
192GO:0009750: response to fructose1.99E-02
193GO:0006415: translational termination1.99E-02
194GO:0048527: lateral root development2.13E-02
195GO:0006790: sulfur compound metabolic process2.19E-02
196GO:0010152: pollen maturation2.19E-02
197GO:0016024: CDP-diacylglycerol biosynthetic process2.19E-02
198GO:0010582: floral meristem determinacy2.19E-02
199GO:0006865: amino acid transport2.24E-02
200GO:0009725: response to hormone2.40E-02
201GO:0010588: cotyledon vascular tissue pattern formation2.40E-02
202GO:0010628: positive regulation of gene expression2.40E-02
203GO:0030036: actin cytoskeleton organization2.40E-02
204GO:0048467: gynoecium development2.61E-02
205GO:0009933: meristem structural organization2.61E-02
206GO:0006839: mitochondrial transport2.67E-02
207GO:0045490: pectin catabolic process2.73E-02
208GO:0006631: fatty acid metabolic process2.78E-02
209GO:0090351: seedling development2.83E-02
210GO:0010030: positive regulation of seed germination2.83E-02
211GO:0070588: calcium ion transmembrane transport2.83E-02
212GO:0008283: cell proliferation3.02E-02
213GO:0006071: glycerol metabolic process3.06E-02
214GO:0010025: wax biosynthetic process3.06E-02
215GO:0042753: positive regulation of circadian rhythm3.06E-02
216GO:0009833: plant-type primary cell wall biogenesis3.06E-02
217GO:0016042: lipid catabolic process3.19E-02
218GO:0051017: actin filament bundle assembly3.30E-02
219GO:0030150: protein import into mitochondrial matrix3.30E-02
220GO:0007010: cytoskeleton organization3.30E-02
221GO:0006855: drug transmembrane transport3.52E-02
222GO:0006874: cellular calcium ion homeostasis3.54E-02
223GO:0043622: cortical microtubule organization3.54E-02
224GO:0071555: cell wall organization3.73E-02
225GO:0003333: amino acid transmembrane transport3.78E-02
226GO:2000022: regulation of jasmonic acid mediated signaling pathway4.04E-02
227GO:0035428: hexose transmembrane transport4.04E-02
228GO:0006730: one-carbon metabolic process4.04E-02
229GO:0031348: negative regulation of defense response4.04E-02
230GO:0080092: regulation of pollen tube growth4.04E-02
231GO:0010082: regulation of root meristem growth4.29E-02
232GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.29E-02
233GO:0009686: gibberellin biosynthetic process4.29E-02
234GO:0010214: seed coat development4.55E-02
235GO:0009306: protein secretion4.55E-02
236GO:0019722: calcium-mediated signaling4.55E-02
237GO:0006468: protein phosphorylation4.59E-02
238GO:0070417: cellular response to cold4.82E-02
239GO:0008284: positive regulation of cell proliferation4.82E-02
240GO:0042147: retrograde transport, endosome to Golgi4.82E-02
RankGO TermAdjusted P value
1GO:0019136: deoxynucleoside kinase activity0.00E+00
2GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
3GO:0019808: polyamine binding0.00E+00
4GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
5GO:0010301: xanthoxin dehydrogenase activity0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0015276: ligand-gated ion channel activity0.00E+00
8GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
9GO:1990534: thermospermine oxidase activity0.00E+00
10GO:0050139: nicotinate-N-glucosyltransferase activity5.92E-04
11GO:0010945: CoA pyrophosphatase activity5.92E-04
12GO:0004733: pyridoxamine-phosphate oxidase activity5.92E-04
13GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.92E-04
14GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity5.92E-04
15GO:0008066: glutamate receptor activity5.92E-04
16GO:0005290: L-histidine transmembrane transporter activity5.92E-04
17GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.92E-04
18GO:0052857: NADPHX epimerase activity5.92E-04
19GO:0052856: NADHX epimerase activity5.92E-04
20GO:0010313: phytochrome binding5.92E-04
21GO:0030570: pectate lyase activity7.18E-04
22GO:0043425: bHLH transcription factor binding1.27E-03
23GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.27E-03
24GO:0009977: proton motive force dependent protein transmembrane transporter activity1.27E-03
25GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.27E-03
26GO:0003938: IMP dehydrogenase activity1.27E-03
27GO:0009973: adenylyl-sulfate reductase activity1.27E-03
28GO:0102083: 7,8-dihydromonapterin aldolase activity1.27E-03
29GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.27E-03
30GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.27E-03
31GO:0004150: dihydroneopterin aldolase activity1.27E-03
32GO:0000064: L-ornithine transmembrane transporter activity1.27E-03
33GO:0015172: acidic amino acid transmembrane transporter activity1.27E-03
34GO:0004512: inositol-3-phosphate synthase activity1.27E-03
35GO:0050017: L-3-cyanoalanine synthase activity1.27E-03
36GO:0017118: lipoyltransferase activity1.27E-03
37GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.49E-03
38GO:0004805: trehalose-phosphatase activity1.65E-03
39GO:0008017: microtubule binding1.83E-03
40GO:0052692: raffinose alpha-galactosidase activity2.10E-03
41GO:0070330: aromatase activity2.10E-03
42GO:0004557: alpha-galactosidase activity2.10E-03
43GO:0005262: calcium channel activity2.49E-03
44GO:0004022: alcohol dehydrogenase (NAD) activity2.49E-03
45GO:0052655: L-valine transaminase activity3.04E-03
46GO:0015189: L-lysine transmembrane transporter activity3.04E-03
47GO:0035529: NADH pyrophosphatase activity3.04E-03
48GO:0003999: adenine phosphoribosyltransferase activity3.04E-03
49GO:0000254: C-4 methylsterol oxidase activity3.04E-03
50GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity3.04E-03
51GO:0015175: neutral amino acid transmembrane transporter activity3.04E-03
52GO:0017172: cysteine dioxygenase activity3.04E-03
53GO:0052656: L-isoleucine transaminase activity3.04E-03
54GO:0015181: arginine transmembrane transporter activity3.04E-03
55GO:0047627: adenylylsulfatase activity3.04E-03
56GO:0052654: L-leucine transaminase activity3.04E-03
57GO:0016788: hydrolase activity, acting on ester bonds3.77E-03
58GO:0004845: uracil phosphoribosyltransferase activity4.10E-03
59GO:0008409: 5'-3' exonuclease activity4.10E-03
60GO:0009044: xylan 1,4-beta-xylosidase activity4.10E-03
61GO:0080032: methyl jasmonate esterase activity4.10E-03
62GO:0043015: gamma-tubulin binding4.10E-03
63GO:0004084: branched-chain-amino-acid transaminase activity4.10E-03
64GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity4.10E-03
65GO:0046556: alpha-L-arabinofuranosidase activity4.10E-03
66GO:0016829: lyase activity4.79E-03
67GO:0016846: carbon-sulfur lyase activity5.27E-03
68GO:0018685: alkane 1-monooxygenase activity5.27E-03
69GO:0016773: phosphotransferase activity, alcohol group as acceptor5.27E-03
70GO:0004040: amidase activity5.27E-03
71GO:0003727: single-stranded RNA binding6.18E-03
72GO:0052689: carboxylic ester hydrolase activity6.36E-03
73GO:0004709: MAP kinase kinase kinase activity6.54E-03
74GO:0000210: NAD+ diphosphatase activity6.54E-03
75GO:0016208: AMP binding6.54E-03
76GO:0016462: pyrophosphatase activity6.54E-03
77GO:0042578: phosphoric ester hydrolase activity6.54E-03
78GO:0008519: ammonium transmembrane transporter activity6.54E-03
79GO:0043621: protein self-association6.56E-03
80GO:0008536: Ran GTPase binding7.82E-03
81GO:0004124: cysteine synthase activity7.90E-03
82GO:0004849: uridine kinase activity7.90E-03
83GO:0003730: mRNA 3'-UTR binding7.90E-03
84GO:0004144: diacylglycerol O-acyltransferase activity7.90E-03
85GO:0016832: aldehyde-lyase activity7.90E-03
86GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.90E-03
87GO:0010181: FMN binding8.42E-03
88GO:0005338: nucleotide-sugar transmembrane transporter activity9.35E-03
89GO:0019899: enzyme binding9.35E-03
90GO:0003872: 6-phosphofructokinase activity9.35E-03
91GO:0015171: amino acid transmembrane transporter activity9.91E-03
92GO:0043022: ribosome binding1.09E-02
93GO:0003747: translation release factor activity1.43E-02
94GO:0016301: kinase activity1.53E-02
95GO:0015238: drug transmembrane transporter activity1.94E-02
96GO:0008327: methyl-CpG binding1.99E-02
97GO:0008794: arsenate reductase (glutaredoxin) activity1.99E-02
98GO:0046872: metal ion binding2.21E-02
99GO:0000175: 3'-5'-exoribonuclease activity2.40E-02
100GO:0015266: protein channel activity2.40E-02
101GO:0004089: carbonate dehydratase activity2.40E-02
102GO:0031072: heat shock protein binding2.40E-02
103GO:0015297: antiporter activity2.58E-02
104GO:0008083: growth factor activity2.61E-02
105GO:0008131: primary amine oxidase activity2.61E-02
106GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.61E-02
107GO:0004970: ionotropic glutamate receptor activity2.83E-02
108GO:0005217: intracellular ligand-gated ion channel activity2.83E-02
109GO:0003887: DNA-directed DNA polymerase activity3.06E-02
110GO:0035091: phosphatidylinositol binding3.27E-02
111GO:0005385: zinc ion transmembrane transporter activity3.30E-02
112GO:0005528: FK506 binding3.30E-02
113GO:0003714: transcription corepressor activity3.30E-02
114GO:0008324: cation transmembrane transporter activity3.54E-02
115GO:0005506: iron ion binding3.62E-02
116GO:0042802: identical protein binding3.68E-02
117GO:0044212: transcription regulatory region DNA binding3.73E-02
118GO:0008408: 3'-5' exonuclease activity3.78E-02
119GO:0004176: ATP-dependent peptidase activity3.78E-02
120GO:0019706: protein-cysteine S-palmitoyltransferase activity3.78E-02
121GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.04E-02
122GO:0016760: cellulose synthase (UDP-forming) activity4.29E-02
123GO:0003777: microtubule motor activity4.49E-02
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Gene type



Gene DE type