Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G65410

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019988: charged-tRNA amino acid modification0.00E+00
2GO:0090615: mitochondrial mRNA processing0.00E+00
3GO:0000492: box C/D snoRNP assembly0.00E+00
4GO:0042794: rRNA transcription from plastid promoter0.00E+00
5GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
6GO:0045014: negative regulation of transcription by glucose0.00E+00
7GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
8GO:0090627: plant epidermal cell differentiation0.00E+00
9GO:0009606: tropism0.00E+00
10GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
11GO:0090322: regulation of superoxide metabolic process0.00E+00
12GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
13GO:1903224: regulation of endodermal cell differentiation0.00E+00
14GO:0035884: arabinan biosynthetic process0.00E+00
15GO:0080127: fruit septum development0.00E+00
16GO:0045184: establishment of protein localization0.00E+00
17GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
18GO:0042793: transcription from plastid promoter4.19E-10
19GO:0009658: chloroplast organization2.85E-08
20GO:0009451: RNA modification6.38E-06
21GO:0042127: regulation of cell proliferation6.33E-05
22GO:0006479: protein methylation1.59E-04
23GO:0048497: maintenance of floral organ identity2.42E-04
24GO:0006364: rRNA processing2.61E-04
25GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.05E-04
26GO:0009793: embryo development ending in seed dormancy3.30E-04
27GO:0009913: epidermal cell differentiation3.41E-04
28GO:1901259: chloroplast rRNA processing4.54E-04
29GO:0042759: long-chain fatty acid biosynthetic process5.43E-04
30GO:0033206: meiotic cytokinesis5.43E-04
31GO:0035987: endodermal cell differentiation5.43E-04
32GO:0006436: tryptophanyl-tRNA aminoacylation5.43E-04
33GO:0034757: negative regulation of iron ion transport5.43E-04
34GO:0042659: regulation of cell fate specification5.43E-04
35GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process5.43E-04
36GO:1905039: carboxylic acid transmembrane transport5.43E-04
37GO:1905200: gibberellic acid transmembrane transport5.43E-04
38GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic5.43E-04
39GO:0080112: seed growth5.43E-04
40GO:0090558: plant epidermis development5.43E-04
41GO:0010063: positive regulation of trichoblast fate specification5.43E-04
42GO:1903866: palisade mesophyll development5.43E-04
43GO:0090063: positive regulation of microtubule nucleation5.43E-04
44GO:0006401: RNA catabolic process5.81E-04
45GO:0006955: immune response5.81E-04
46GO:0042255: ribosome assembly7.24E-04
47GO:0006353: DNA-templated transcription, termination7.24E-04
48GO:0007389: pattern specification process8.82E-04
49GO:0010305: leaf vascular tissue pattern formation9.10E-04
50GO:0000373: Group II intron splicing1.05E-03
51GO:0048439: flower morphogenesis1.17E-03
52GO:0009220: pyrimidine ribonucleotide biosynthetic process1.17E-03
53GO:1904143: positive regulation of carotenoid biosynthetic process1.17E-03
54GO:0080009: mRNA methylation1.17E-03
55GO:1901529: positive regulation of anion channel activity1.17E-03
56GO:0010254: nectary development1.17E-03
57GO:0033566: gamma-tubulin complex localization1.17E-03
58GO:0048255: mRNA stabilization1.17E-03
59GO:1902326: positive regulation of chlorophyll biosynthetic process1.17E-03
60GO:0010569: regulation of double-strand break repair via homologous recombination1.17E-03
61GO:0010271: regulation of chlorophyll catabolic process1.17E-03
62GO:0010434: bract formation1.17E-03
63GO:0010541: acropetal auxin transport1.17E-03
64GO:0018026: peptidyl-lysine monomethylation1.17E-03
65GO:0048731: system development1.17E-03
66GO:0009662: etioplast organization1.17E-03
67GO:1900865: chloroplast RNA modification1.24E-03
68GO:0010583: response to cyclopentenone1.29E-03
69GO:0048829: root cap development1.45E-03
70GO:0048229: gametophyte development1.67E-03
71GO:0010582: floral meristem determinacy1.92E-03
72GO:0042780: tRNA 3'-end processing1.92E-03
73GO:0001578: microtubule bundle formation1.92E-03
74GO:0009954: proximal/distal pattern formation1.92E-03
75GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.92E-03
76GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.92E-03
77GO:0090708: specification of plant organ axis polarity1.92E-03
78GO:0080117: secondary growth1.92E-03
79GO:0090391: granum assembly1.92E-03
80GO:0006518: peptide metabolic process1.92E-03
81GO:0010588: cotyledon vascular tissue pattern formation2.18E-03
82GO:0009416: response to light stimulus2.44E-03
83GO:0048481: plant ovule development2.67E-03
84GO:0080188: RNA-directed DNA methylation2.77E-03
85GO:1902476: chloride transmembrane transport2.78E-03
86GO:0010071: root meristem specification2.78E-03
87GO:0010239: chloroplast mRNA processing2.78E-03
88GO:0010306: rhamnogalacturonan II biosynthetic process2.78E-03
89GO:0007276: gamete generation2.78E-03
90GO:0043481: anthocyanin accumulation in tissues in response to UV light2.78E-03
91GO:0009558: embryo sac cellularization2.78E-03
92GO:2000377: regulation of reactive oxygen species metabolic process3.42E-03
93GO:0006808: regulation of nitrogen utilization3.75E-03
94GO:1900864: mitochondrial RNA modification3.75E-03
95GO:0051322: anaphase3.75E-03
96GO:0030104: water homeostasis3.75E-03
97GO:0006221: pyrimidine nucleotide biosynthetic process3.75E-03
98GO:0044205: 'de novo' UMP biosynthetic process3.75E-03
99GO:0016998: cell wall macromolecule catabolic process4.16E-03
100GO:0003333: amino acid transmembrane transport4.16E-03
101GO:0009734: auxin-activated signaling pathway4.80E-03
102GO:0016123: xanthophyll biosynthetic process4.81E-03
103GO:0016558: protein import into peroxisome matrix4.81E-03
104GO:0016120: carotene biosynthetic process4.81E-03
105GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.97E-03
106GO:0040008: regulation of growth5.29E-03
107GO:0010304: PSII associated light-harvesting complex II catabolic process5.96E-03
108GO:0009959: negative gravitropism5.96E-03
109GO:0060918: auxin transport5.96E-03
110GO:1902456: regulation of stomatal opening5.96E-03
111GO:0016554: cytidine to uridine editing5.96E-03
112GO:0048831: regulation of shoot system development5.96E-03
113GO:0003006: developmental process involved in reproduction5.96E-03
114GO:0010315: auxin efflux5.96E-03
115GO:0009643: photosynthetic acclimation5.96E-03
116GO:0006014: D-ribose metabolic process5.96E-03
117GO:0008033: tRNA processing6.35E-03
118GO:0010501: RNA secondary structure unwinding6.35E-03
119GO:0010087: phloem or xylem histogenesis6.35E-03
120GO:0009741: response to brassinosteroid6.85E-03
121GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity7.20E-03
122GO:0010310: regulation of hydrogen peroxide metabolic process7.20E-03
123GO:2000067: regulation of root morphogenesis7.20E-03
124GO:0009955: adaxial/abaxial pattern specification7.20E-03
125GO:0009082: branched-chain amino acid biosynthetic process7.20E-03
126GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.20E-03
127GO:0009942: longitudinal axis specification7.20E-03
128GO:0048509: regulation of meristem development7.20E-03
129GO:2000033: regulation of seed dormancy process7.20E-03
130GO:0009099: valine biosynthetic process7.20E-03
131GO:0009736: cytokinin-activated signaling pathway7.34E-03
132GO:0007018: microtubule-based movement7.37E-03
133GO:0048825: cotyledon development7.91E-03
134GO:0006468: protein phosphorylation8.28E-03
135GO:0080156: mitochondrial mRNA modification8.47E-03
136GO:0000082: G1/S transition of mitotic cell cycle8.52E-03
137GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process8.52E-03
138GO:0010103: stomatal complex morphogenesis8.52E-03
139GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway8.52E-03
140GO:0006821: chloride transport8.52E-03
141GO:0048437: floral organ development8.52E-03
142GO:0010444: guard mother cell differentiation8.52E-03
143GO:0032502: developmental process9.06E-03
144GO:0048367: shoot system development9.47E-03
145GO:0010492: maintenance of shoot apical meristem identity9.92E-03
146GO:0055075: potassium ion homeostasis9.92E-03
147GO:0052543: callose deposition in cell wall9.92E-03
148GO:0009938: negative regulation of gibberellic acid mediated signaling pathway9.92E-03
149GO:0006402: mRNA catabolic process9.92E-03
150GO:0001522: pseudouridine synthesis9.92E-03
151GO:0009642: response to light intensity9.92E-03
152GO:0030162: regulation of proteolysis9.92E-03
153GO:0046620: regulation of organ growth9.92E-03
154GO:0048766: root hair initiation9.92E-03
155GO:0009828: plant-type cell wall loosening1.03E-02
156GO:0019430: removal of superoxide radicals1.14E-02
157GO:0009827: plant-type cell wall modification1.14E-02
158GO:0010233: phloem transport1.14E-02
159GO:0010497: plasmodesmata-mediated intercellular transport1.14E-02
160GO:0009097: isoleucine biosynthetic process1.14E-02
161GO:0009657: plastid organization1.14E-02
162GO:0032544: plastid translation1.14E-02
163GO:0000910: cytokinesis1.16E-02
164GO:0010027: thylakoid membrane organization1.23E-02
165GO:0048589: developmental growth1.30E-02
166GO:0000902: cell morphogenesis1.30E-02
167GO:0098656: anion transmembrane transport1.30E-02
168GO:0048507: meristem development1.30E-02
169GO:0010029: regulation of seed germination1.30E-02
170GO:0042761: very long-chain fatty acid biosynthetic process1.46E-02
171GO:2000280: regulation of root development1.46E-02
172GO:0006349: regulation of gene expression by genetic imprinting1.46E-02
173GO:0031425: chloroplast RNA processing1.46E-02
174GO:0016441: posttranscriptional gene silencing1.63E-02
175GO:0006949: syncytium formation1.63E-02
176GO:0010048: vernalization response1.63E-02
177GO:0006535: cysteine biosynthetic process from serine1.63E-02
178GO:0000160: phosphorelay signal transduction system1.69E-02
179GO:0048765: root hair cell differentiation1.81E-02
180GO:0046856: phosphatidylinositol dephosphorylation1.81E-02
181GO:0006351: transcription, DNA-templated1.81E-02
182GO:0009089: lysine biosynthetic process via diaminopimelate1.81E-02
183GO:1903507: negative regulation of nucleic acid-templated transcription1.81E-02
184GO:0015770: sucrose transport1.81E-02
185GO:0009750: response to fructose1.81E-02
186GO:0006865: amino acid transport1.96E-02
187GO:0006355: regulation of transcription, DNA-templated1.99E-02
188GO:0012501: programmed cell death1.99E-02
189GO:0010152: pollen maturation1.99E-02
190GO:0045037: protein import into chloroplast stroma1.99E-02
191GO:0009691: cytokinin biosynthetic process2.18E-02
192GO:0010102: lateral root morphogenesis2.18E-02
193GO:0030001: metal ion transport2.34E-02
194GO:0009887: animal organ morphogenesis2.37E-02
195GO:0010540: basipetal auxin transport2.37E-02
196GO:0048768: root hair cell tip growth2.37E-02
197GO:0048467: gynoecium development2.37E-02
198GO:0010020: chloroplast fission2.37E-02
199GO:0009901: anther dehiscence2.58E-02
200GO:0009744: response to sucrose2.64E-02
201GO:0009739: response to gibberellin2.66E-02
202GO:0007166: cell surface receptor signaling pathway2.73E-02
203GO:0006833: water transport2.78E-02
204GO:0010025: wax biosynthetic process2.78E-02
205GO:0006636: unsaturated fatty acid biosynthetic process2.78E-02
206GO:0008380: RNA splicing2.88E-02
207GO:0048364: root development2.91E-02
208GO:0010187: negative regulation of seed germination3.00E-02
209GO:0019344: cysteine biosynthetic process3.00E-02
210GO:0009944: polarity specification of adaxial/abaxial axis3.00E-02
211GO:0009863: salicylic acid mediated signaling pathway3.00E-02
212GO:0010073: meristem maintenance3.22E-02
213GO:0051302: regulation of cell division3.22E-02
214GO:0006418: tRNA aminoacylation for protein translation3.22E-02
215GO:0009664: plant-type cell wall organization3.32E-02
216GO:0009733: response to auxin3.61E-02
217GO:0030245: cellulose catabolic process3.67E-02
218GO:2000022: regulation of jasmonic acid mediated signaling pathway3.67E-02
219GO:0010227: floral organ abscission3.90E-02
220GO:0010082: regulation of root meristem growth3.90E-02
221GO:0071215: cellular response to abscisic acid stimulus3.90E-02
222GO:0006417: regulation of translation3.94E-02
223GO:0010091: trichome branching4.14E-02
224GO:0048443: stamen development4.14E-02
225GO:0048316: seed development4.34E-02
226GO:0070417: cellular response to cold4.39E-02
227GO:0010118: stomatal movement4.63E-02
228GO:0000226: microtubule cytoskeleton organization4.63E-02
229GO:0042335: cuticle development4.63E-02
230GO:0080022: primary root development4.63E-02
231GO:0009740: gibberellic acid mediated signaling pathway4.75E-02
232GO:0048366: leaf development4.85E-02
233GO:0048868: pollen tube development4.89E-02
234GO:0009958: positive gravitropism4.89E-02
235GO:0009960: endosperm development4.89E-02
236GO:0071472: cellular response to salt stress4.89E-02
237GO:0009553: embryo sac development4.90E-02
RankGO TermAdjusted P value
1GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity0.00E+00
2GO:0016763: transferase activity, transferring pentosyl groups0.00E+00
3GO:0008859: exoribonuclease II activity0.00E+00
4GO:0071633: dihydroceramidase activity0.00E+00
5GO:0042834: peptidoglycan binding0.00E+00
6GO:0004152: dihydroorotate dehydrogenase activity0.00E+00
7GO:0003723: RNA binding3.03E-08
8GO:0004519: endonuclease activity7.29E-06
9GO:0004830: tryptophan-tRNA ligase activity5.43E-04
10GO:0004160: dihydroxy-acid dehydratase activity5.43E-04
11GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor5.43E-04
12GO:0004654: polyribonucleotide nucleotidyltransferase activity5.43E-04
13GO:0004016: adenylate cyclase activity5.43E-04
14GO:1905201: gibberellin transmembrane transporter activity5.43E-04
15GO:0008836: diaminopimelate decarboxylase activity5.43E-04
16GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity5.43E-04
17GO:0016274: protein-arginine N-methyltransferase activity5.43E-04
18GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.43E-04
19GO:0052381: tRNA dimethylallyltransferase activity5.43E-04
20GO:0003727: single-stranded RNA binding6.76E-04
21GO:0019843: rRNA binding7.57E-04
22GO:0008173: RNA methyltransferase activity8.82E-04
23GO:0042389: omega-3 fatty acid desaturase activity1.17E-03
24GO:0016868: intramolecular transferase activity, phosphotransferases1.17E-03
25GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.17E-03
26GO:0009884: cytokinin receptor activity1.17E-03
27GO:0016805: dipeptidase activity1.92E-03
28GO:0005034: osmosensor activity1.92E-03
29GO:0017150: tRNA dihydrouridine synthase activity1.92E-03
30GO:0042781: 3'-tRNA processing endoribonuclease activity1.92E-03
31GO:0009982: pseudouridine synthase activity2.18E-03
32GO:0000175: 3'-5'-exoribonuclease activity2.18E-03
33GO:0008168: methyltransferase activity2.70E-03
34GO:0008508: bile acid:sodium symporter activity2.78E-03
35GO:0001872: (1->3)-beta-D-glucan binding2.78E-03
36GO:0009041: uridylate kinase activity2.78E-03
37GO:0016279: protein-lysine N-methyltransferase activity3.75E-03
38GO:0010011: auxin binding3.75E-03
39GO:0016836: hydro-lyase activity3.75E-03
40GO:0010328: auxin influx transmembrane transporter activity3.75E-03
41GO:0005253: anion channel activity3.75E-03
42GO:0005515: protein binding3.81E-03
43GO:0043565: sequence-specific DNA binding4.56E-03
44GO:0008289: lipid binding4.69E-03
45GO:0005524: ATP binding4.73E-03
46GO:0003989: acetyl-CoA carboxylase activity4.81E-03
47GO:0030570: pectate lyase activity4.97E-03
48GO:0016887: ATPase activity5.79E-03
49GO:0005247: voltage-gated chloride channel activity5.96E-03
50GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity5.96E-03
51GO:0004784: superoxide dismutase activity5.96E-03
52GO:0019900: kinase binding7.20E-03
53GO:0004124: cysteine synthase activity7.20E-03
54GO:0004747: ribokinase activity7.20E-03
55GO:0019901: protein kinase binding7.91E-03
56GO:0003777: microtubule motor activity8.36E-03
57GO:0030515: snoRNA binding8.52E-03
58GO:0004674: protein serine/threonine kinase activity8.74E-03
59GO:0008865: fructokinase activity9.92E-03
60GO:0004672: protein kinase activity1.02E-02
61GO:0008237: metallopeptidase activity1.09E-02
62GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.14E-02
63GO:0003724: RNA helicase activity1.14E-02
64GO:0008026: ATP-dependent helicase activity1.24E-02
65GO:0000989: transcription factor activity, transcription factor binding1.30E-02
66GO:0005215: transporter activity1.39E-02
67GO:0004004: ATP-dependent RNA helicase activity1.45E-02
68GO:0009672: auxin:proton symporter activity1.46E-02
69GO:0004673: protein histidine kinase activity1.63E-02
70GO:0004222: metalloendopeptidase activity1.78E-02
71GO:0008559: xenobiotic-transporting ATPase activity1.81E-02
72GO:0008515: sucrose transmembrane transporter activity1.81E-02
73GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.81E-02
74GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.99E-02
75GO:0003697: single-stranded DNA binding2.05E-02
76GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.11E-02
77GO:0005315: inorganic phosphate transmembrane transporter activity2.18E-02
78GO:0031072: heat shock protein binding2.18E-02
79GO:0000155: phosphorelay sensor kinase activity2.18E-02
80GO:0003725: double-stranded RNA binding2.18E-02
81GO:0010329: auxin efflux transmembrane transporter activity2.18E-02
82GO:0051539: 4 iron, 4 sulfur cluster binding2.34E-02
83GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.37E-02
84GO:0008017: microtubule binding2.45E-02
85GO:0051119: sugar transmembrane transporter activity2.58E-02
86GO:0003700: transcription factor activity, sequence-specific DNA binding2.58E-02
87GO:0004190: aspartic-type endopeptidase activity2.58E-02
88GO:0015293: symporter activity2.97E-02
89GO:0003714: transcription corepressor activity3.00E-02
90GO:0003677: DNA binding3.20E-02
91GO:0043424: protein histidine kinase binding3.22E-02
92GO:0015079: potassium ion transmembrane transporter activity3.22E-02
93GO:0004540: ribonuclease activity3.44E-02
94GO:0004176: ATP-dependent peptidase activity3.44E-02
95GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.57E-02
96GO:0003690: double-stranded DNA binding3.68E-02
97GO:0008810: cellulase activity3.90E-02
98GO:0015171: amino acid transmembrane transporter activity3.94E-02
99GO:0016788: hydrolase activity, acting on ester bonds4.07E-02
100GO:0008514: organic anion transmembrane transporter activity4.14E-02
101GO:0004812: aminoacyl-tRNA ligase activity4.39E-02
102GO:0005102: receptor binding4.39E-02
103GO:0018024: histone-lysine N-methyltransferase activity4.39E-02
104GO:0003713: transcription coactivator activity4.89E-02
105GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity4.89E-02
106GO:0001085: RNA polymerase II transcription factor binding4.89E-02
107GO:0003779: actin binding4.90E-02
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Gene type



Gene DE type