Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G65030

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0036265: RNA (guanine-N7)-methylation0.00E+00
2GO:0043488: regulation of mRNA stability0.00E+00
3GO:2000505: regulation of energy homeostasis0.00E+00
4GO:0090706: specification of plant organ position0.00E+00
5GO:0017038: protein import0.00E+00
6GO:0046460: neutral lipid biosynthetic process0.00E+00
7GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
8GO:0090279: regulation of calcium ion import0.00E+00
9GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
10GO:0031116: positive regulation of microtubule polymerization0.00E+00
11GO:0090470: shoot organ boundary specification0.00E+00
12GO:0007037: vacuolar phosphate transport0.00E+00
13GO:0042407: cristae formation0.00E+00
14GO:0042817: pyridoxal metabolic process0.00E+00
15GO:0008618: 7-methylguanosine metabolic process0.00E+00
16GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
17GO:0071474: cellular hyperosmotic response0.00E+00
18GO:0018023: peptidyl-lysine trimethylation0.00E+00
19GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
20GO:0030488: tRNA methylation5.58E-06
21GO:0051322: anaphase8.40E-05
22GO:0006021: inositol biosynthetic process8.40E-05
23GO:1902183: regulation of shoot apical meristem development1.31E-04
24GO:0010158: abaxial cell fate specification1.31E-04
25GO:0045038: protein import into chloroplast thylakoid membrane1.31E-04
26GO:1902458: positive regulation of stomatal opening3.70E-04
27GO:0048508: embryonic meristem development3.70E-04
28GO:0006177: GMP biosynthetic process3.70E-04
29GO:0010450: inflorescence meristem growth3.70E-04
30GO:0010362: negative regulation of anion channel activity by blue light3.70E-04
31GO:0009090: homoserine biosynthetic process3.70E-04
32GO:0031426: polycistronic mRNA processing3.70E-04
33GO:0071028: nuclear mRNA surveillance3.70E-04
34GO:0043266: regulation of potassium ion transport3.70E-04
35GO:0006659: phosphatidylserine biosynthetic process3.70E-04
36GO:2000021: regulation of ion homeostasis3.70E-04
37GO:2000024: regulation of leaf development6.07E-04
38GO:0009638: phototropism7.16E-04
39GO:1900865: chloroplast RNA modification7.16E-04
40GO:0031125: rRNA 3'-end processing8.05E-04
41GO:0010155: regulation of proton transport8.05E-04
42GO:1903426: regulation of reactive oxygen species biosynthetic process8.05E-04
43GO:0071051: polyadenylation-dependent snoRNA 3'-end processing8.05E-04
44GO:0051262: protein tetramerization8.05E-04
45GO:0006739: NADP metabolic process8.05E-04
46GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole8.05E-04
47GO:0034475: U4 snRNA 3'-end processing8.05E-04
48GO:1900871: chloroplast mRNA modification8.05E-04
49GO:0007154: cell communication8.05E-04
50GO:0018026: peptidyl-lysine monomethylation8.05E-04
51GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation8.05E-04
52GO:0090342: regulation of cell aging8.05E-04
53GO:1900033: negative regulation of trichome patterning8.05E-04
54GO:0009945: radial axis specification8.05E-04
55GO:0034755: iron ion transmembrane transport8.05E-04
56GO:0006423: cysteinyl-tRNA aminoacylation8.05E-04
57GO:0006435: threonyl-tRNA aminoacylation8.05E-04
58GO:0006782: protoporphyrinogen IX biosynthetic process8.35E-04
59GO:0009684: indoleacetic acid biosynthetic process9.61E-04
60GO:0009089: lysine biosynthetic process via diaminopimelate9.61E-04
61GO:0009658: chloroplast organization1.04E-03
62GO:0015995: chlorophyll biosynthetic process1.13E-03
63GO:0045165: cell fate commitment1.30E-03
64GO:0016075: rRNA catabolic process1.30E-03
65GO:0033591: response to L-ascorbic acid1.30E-03
66GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.30E-03
67GO:0019419: sulfate reduction1.30E-03
68GO:0001578: microtubule bundle formation1.30E-03
69GO:0045493: xylan catabolic process1.30E-03
70GO:0090351: seedling development1.57E-03
71GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.88E-03
72GO:0009067: aspartate family amino acid biosynthetic process1.88E-03
73GO:0010371: regulation of gibberellin biosynthetic process1.88E-03
74GO:0006166: purine ribonucleoside salvage1.88E-03
75GO:0010239: chloroplast mRNA processing1.88E-03
76GO:0008615: pyridoxine biosynthetic process1.88E-03
77GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.88E-03
78GO:0006168: adenine salvage1.88E-03
79GO:0006164: purine nucleotide biosynthetic process1.88E-03
80GO:0009944: polarity specification of adaxial/abaxial axis1.93E-03
81GO:0010073: meristem maintenance2.13E-03
82GO:0006631: fatty acid metabolic process2.16E-03
83GO:0048629: trichome patterning2.52E-03
84GO:0010109: regulation of photosynthesis2.52E-03
85GO:0015846: polyamine transport2.52E-03
86GO:0009765: photosynthesis, light harvesting2.52E-03
87GO:2000306: positive regulation of photomorphogenesis2.52E-03
88GO:0022622: root system development2.52E-03
89GO:0071483: cellular response to blue light2.52E-03
90GO:0006734: NADH metabolic process2.52E-03
91GO:0007020: microtubule nucleation2.52E-03
92GO:0009165: nucleotide biosynthetic process2.52E-03
93GO:0016123: xanthophyll biosynthetic process3.23E-03
94GO:0044209: AMP salvage3.23E-03
95GO:0046785: microtubule polymerization3.23E-03
96GO:0009904: chloroplast accumulation movement3.23E-03
97GO:0016120: carotene biosynthetic process3.23E-03
98GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.30E-03
99GO:0009585: red, far-red light phototransduction3.51E-03
100GO:0009958: positive gravitropism3.84E-03
101GO:0010154: fruit development3.84E-03
102GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.99E-03
103GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.99E-03
104GO:0006139: nucleobase-containing compound metabolic process3.99E-03
105GO:0016554: cytidine to uridine editing3.99E-03
106GO:0045962: positive regulation of development, heterochronic3.99E-03
107GO:0046855: inositol phosphate dephosphorylation3.99E-03
108GO:0009791: post-embryonic development4.43E-03
109GO:0010310: regulation of hydrogen peroxide metabolic process4.81E-03
110GO:0042372: phylloquinone biosynthetic process4.81E-03
111GO:0009082: branched-chain amino acid biosynthetic process4.81E-03
112GO:0009942: longitudinal axis specification4.81E-03
113GO:0034389: lipid particle organization4.81E-03
114GO:0009099: valine biosynthetic process4.81E-03
115GO:0009903: chloroplast avoidance movement4.81E-03
116GO:0009088: threonine biosynthetic process4.81E-03
117GO:0010583: response to cyclopentenone5.07E-03
118GO:0032880: regulation of protein localization5.68E-03
119GO:0009395: phospholipid catabolic process5.68E-03
120GO:0048528: post-embryonic root development5.68E-03
121GO:0006400: tRNA modification5.68E-03
122GO:0000910: cytokinesis6.48E-03
123GO:0052543: callose deposition in cell wall6.61E-03
124GO:0007155: cell adhesion6.61E-03
125GO:0006605: protein targeting6.61E-03
126GO:0010078: maintenance of root meristem identity6.61E-03
127GO:0042255: ribosome assembly6.61E-03
128GO:2000070: regulation of response to water deprivation6.61E-03
129GO:0006353: DNA-templated transcription, termination6.61E-03
130GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.68E-03
131GO:0016126: sterol biosynthetic process6.87E-03
132GO:0043562: cellular response to nitrogen levels7.58E-03
133GO:0009808: lignin metabolic process7.58E-03
134GO:0010093: specification of floral organ identity7.58E-03
135GO:0071482: cellular response to light stimulus7.58E-03
136GO:0022900: electron transport chain7.58E-03
137GO:0009097: isoleucine biosynthetic process7.58E-03
138GO:0009627: systemic acquired resistance7.68E-03
139GO:0010206: photosystem II repair8.60E-03
140GO:0019432: triglyceride biosynthetic process8.60E-03
141GO:0006783: heme biosynthetic process8.60E-03
142GO:0048507: meristem development8.60E-03
143GO:0000373: Group II intron splicing8.60E-03
144GO:0006189: 'de novo' IMP biosynthetic process8.60E-03
145GO:0018298: protein-chromophore linkage8.97E-03
146GO:0055114: oxidation-reduction process9.36E-03
147GO:0005982: starch metabolic process9.67E-03
148GO:0043067: regulation of programmed cell death9.67E-03
149GO:0006779: porphyrin-containing compound biosynthetic process9.67E-03
150GO:0009098: leucine biosynthetic process9.67E-03
151GO:0010018: far-red light signaling pathway9.67E-03
152GO:0009086: methionine biosynthetic process9.67E-03
153GO:0006811: ion transport9.91E-03
154GO:0048527: lateral root development1.04E-02
155GO:0006949: syncytium formation1.08E-02
156GO:0010629: negative regulation of gene expression1.08E-02
157GO:0000103: sulfate assimilation1.08E-02
158GO:0045036: protein targeting to chloroplast1.08E-02
159GO:0009637: response to blue light1.14E-02
160GO:0019684: photosynthesis, light reaction1.19E-02
161GO:1903507: negative regulation of nucleic acid-templated transcription1.19E-02
162GO:0008285: negative regulation of cell proliferation1.19E-02
163GO:0006879: cellular iron ion homeostasis1.19E-02
164GO:0006352: DNA-templated transcription, initiation1.19E-02
165GO:0006415: translational termination1.19E-02
166GO:0006790: sulfur compound metabolic process1.32E-02
167GO:0010152: pollen maturation1.32E-02
168GO:0016024: CDP-diacylglycerol biosynthetic process1.32E-02
169GO:0045037: protein import into chloroplast stroma1.32E-02
170GO:0009725: response to hormone1.44E-02
171GO:0009767: photosynthetic electron transport chain1.44E-02
172GO:0010588: cotyledon vascular tissue pattern formation1.44E-02
173GO:2000012: regulation of auxin polar transport1.44E-02
174GO:0009785: blue light signaling pathway1.44E-02
175GO:0030036: actin cytoskeleton organization1.44E-02
176GO:0048467: gynoecium development1.57E-02
177GO:0010143: cutin biosynthetic process1.57E-02
178GO:0006541: glutamine metabolic process1.57E-02
179GO:0009933: meristem structural organization1.57E-02
180GO:0019853: L-ascorbic acid biosynthetic process1.70E-02
181GO:0010030: positive regulation of seed germination1.70E-02
182GO:0046854: phosphatidylinositol phosphorylation1.70E-02
183GO:0006071: glycerol metabolic process1.84E-02
184GO:0000162: tryptophan biosynthetic process1.84E-02
185GO:0042753: positive regulation of circadian rhythm1.84E-02
186GO:0019344: cysteine biosynthetic process1.98E-02
187GO:0007010: cytoskeleton organization1.98E-02
188GO:0008299: isoprenoid biosynthetic process2.12E-02
189GO:0043622: cortical microtubule organization2.12E-02
190GO:0051260: protein homooligomerization2.27E-02
191GO:0048511: rhythmic process2.27E-02
192GO:2000022: regulation of jasmonic acid mediated signaling pathway2.42E-02
193GO:0031348: negative regulation of defense response2.42E-02
194GO:0010227: floral organ abscission2.58E-02
195GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.58E-02
196GO:0009416: response to light stimulus2.70E-02
197GO:0009306: protein secretion2.73E-02
198GO:0016117: carotenoid biosynthetic process2.90E-02
199GO:0008284: positive regulation of cell proliferation2.90E-02
200GO:0006396: RNA processing2.92E-02
201GO:0048653: anther development3.06E-02
202GO:0042631: cellular response to water deprivation3.06E-02
203GO:0080022: primary root development3.06E-02
204GO:0008033: tRNA processing3.06E-02
205GO:0010087: phloem or xylem histogenesis3.06E-02
206GO:0045489: pectin biosynthetic process3.23E-02
207GO:0010197: polar nucleus fusion3.23E-02
208GO:0042752: regulation of circadian rhythm3.40E-02
209GO:0009646: response to absence of light3.40E-02
210GO:0007018: microtubule-based movement3.40E-02
211GO:0009851: auxin biosynthetic process3.57E-02
212GO:0048825: cotyledon development3.57E-02
213GO:0008654: phospholipid biosynthetic process3.57E-02
214GO:0032502: developmental process3.93E-02
215GO:0016032: viral process3.93E-02
216GO:0016042: lipid catabolic process3.95E-02
217GO:0030163: protein catabolic process4.11E-02
218GO:0010090: trichome morphogenesis4.11E-02
219GO:0009639: response to red or far red light4.30E-02
220GO:0006464: cellular protein modification process4.30E-02
221GO:0009828: plant-type cell wall loosening4.30E-02
222GO:0006397: mRNA processing4.31E-02
223GO:0006413: translational initiation4.55E-02
224GO:0009793: embryo development ending in seed dormancy4.65E-02
225GO:0045490: pectin catabolic process4.88E-02
RankGO TermAdjusted P value
1GO:0008176: tRNA (guanine-N7-)-methyltransferase activity0.00E+00
2GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
3GO:0019136: deoxynucleoside kinase activity0.00E+00
4GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
5GO:0043864: indoleacetamide hydrolase activity0.00E+00
6GO:0019808: polyamine binding0.00E+00
7GO:0050613: delta14-sterol reductase activity0.00E+00
8GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
11GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
12GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
13GO:0016851: magnesium chelatase activity4.74E-05
14GO:0004040: amidase activity1.31E-04
15GO:0000293: ferric-chelate reductase activity1.88E-04
16GO:0010347: L-galactose-1-phosphate phosphatase activity3.70E-04
17GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.70E-04
18GO:0050139: nicotinate-N-glucosyltransferase activity3.70E-04
19GO:0005227: calcium activated cation channel activity3.70E-04
20GO:0004733: pyridoxamine-phosphate oxidase activity3.70E-04
21GO:0009496: plastoquinol--plastocyanin reductase activity3.70E-04
22GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.70E-04
23GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.70E-04
24GO:0004853: uroporphyrinogen decarboxylase activity3.70E-04
25GO:0052857: NADPHX epimerase activity3.70E-04
26GO:0052856: NADHX epimerase activity3.70E-04
27GO:0008017: microtubule binding5.23E-04
28GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity8.05E-04
29GO:0009977: proton motive force dependent protein transmembrane transporter activity8.05E-04
30GO:0033741: adenylyl-sulfate reductase (glutathione) activity8.05E-04
31GO:0003938: IMP dehydrogenase activity8.05E-04
32GO:0052832: inositol monophosphate 3-phosphatase activity8.05E-04
33GO:0004817: cysteine-tRNA ligase activity8.05E-04
34GO:0009973: adenylyl-sulfate reductase activity8.05E-04
35GO:0080097: L-tryptophan:pyruvate aminotransferase activity8.05E-04
36GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity8.05E-04
37GO:0004829: threonine-tRNA ligase activity8.05E-04
38GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.05E-04
39GO:0008934: inositol monophosphate 1-phosphatase activity8.05E-04
40GO:0052833: inositol monophosphate 4-phosphatase activity8.05E-04
41GO:0004412: homoserine dehydrogenase activity8.05E-04
42GO:0004512: inositol-3-phosphate synthase activity8.05E-04
43GO:0048531: beta-1,3-galactosyltransferase activity8.05E-04
44GO:0017118: lipoyltransferase activity8.05E-04
45GO:0004049: anthranilate synthase activity1.30E-03
46GO:0015462: ATPase-coupled protein transmembrane transporter activity1.30E-03
47GO:0005504: fatty acid binding1.30E-03
48GO:0003913: DNA photolyase activity1.30E-03
49GO:0070402: NADPH binding1.30E-03
50GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.40E-03
51GO:0003993: acid phosphatase activity1.84E-03
52GO:0052655: L-valine transaminase activity1.88E-03
53GO:0001872: (1->3)-beta-D-glucan binding1.88E-03
54GO:0004072: aspartate kinase activity1.88E-03
55GO:0000254: C-4 methylsterol oxidase activity1.88E-03
56GO:0003999: adenine phosphoribosyltransferase activity1.88E-03
57GO:0048027: mRNA 5'-UTR binding1.88E-03
58GO:0052656: L-isoleucine transaminase activity1.88E-03
59GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.88E-03
60GO:0009882: blue light photoreceptor activity1.88E-03
61GO:0052654: L-leucine transaminase activity1.88E-03
62GO:0001053: plastid sigma factor activity2.52E-03
63GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.52E-03
64GO:0004045: aminoacyl-tRNA hydrolase activity2.52E-03
65GO:0045430: chalcone isomerase activity2.52E-03
66GO:0016987: sigma factor activity2.52E-03
67GO:0009044: xylan 1,4-beta-xylosidase activity2.52E-03
68GO:0004084: branched-chain-amino-acid transaminase activity2.52E-03
69GO:0046556: alpha-L-arabinofuranosidase activity2.52E-03
70GO:0016279: protein-lysine N-methyltransferase activity2.52E-03
71GO:0030570: pectate lyase activity2.80E-03
72GO:0016846: carbon-sulfur lyase activity3.23E-03
73GO:0016773: phosphotransferase activity, alcohol group as acceptor3.23E-03
74GO:2001070: starch binding3.99E-03
75GO:0016208: AMP binding3.99E-03
76GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.99E-03
77GO:0042578: phosphoric ester hydrolase activity3.99E-03
78GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.99E-03
79GO:0010181: FMN binding4.13E-03
80GO:0016788: hydrolase activity, acting on ester bonds4.70E-03
81GO:0004017: adenylate kinase activity4.81E-03
82GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.81E-03
83GO:0003730: mRNA 3'-UTR binding4.81E-03
84GO:0016832: aldehyde-lyase activity4.81E-03
85GO:0004144: diacylglycerol O-acyltransferase activity4.81E-03
86GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.81E-03
87GO:0005261: cation channel activity4.81E-03
88GO:0009927: histidine phosphotransfer kinase activity4.81E-03
89GO:0009881: photoreceptor activity5.68E-03
90GO:0016491: oxidoreductase activity5.81E-03
91GO:0043022: ribosome binding6.61E-03
92GO:0052689: carboxylic ester hydrolase activity7.39E-03
93GO:0008173: RNA methyltransferase activity7.58E-03
94GO:0030247: polysaccharide binding8.10E-03
95GO:0003747: translation release factor activity8.60E-03
96GO:0005381: iron ion transmembrane transporter activity9.67E-03
97GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.01E-02
98GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.04E-02
99GO:0008559: xenobiotic-transporting ATPase activity1.19E-02
100GO:0000155: phosphorelay sensor kinase activity1.44E-02
101GO:0000175: 3'-5'-exoribonuclease activity1.44E-02
102GO:0042802: identical protein binding1.50E-02
103GO:0008083: growth factor activity1.57E-02
104GO:0005524: ATP binding1.96E-02
105GO:0051536: iron-sulfur cluster binding1.98E-02
106GO:0005528: FK506 binding1.98E-02
107GO:0003714: transcription corepressor activity1.98E-02
108GO:0051087: chaperone binding2.12E-02
109GO:0003777: microtubule motor activity2.21E-02
110GO:0019706: protein-cysteine S-palmitoyltransferase activity2.27E-02
111GO:0008408: 3'-5' exonuclease activity2.27E-02
112GO:0016874: ligase activity2.67E-02
113GO:0003727: single-stranded RNA binding2.73E-02
114GO:0016746: transferase activity, transferring acyl groups2.92E-02
115GO:0004871: signal transducer activity3.35E-02
116GO:0016853: isomerase activity3.40E-02
117GO:0004872: receptor activity3.57E-02
118GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.64E-02
119GO:0016829: lyase activity3.84E-02
120GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.05E-02
121GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.11E-02
122GO:0016791: phosphatase activity4.30E-02
123GO:0008483: transaminase activity4.49E-02
124GO:0005200: structural constituent of cytoskeleton4.49E-02
125GO:0016597: amino acid binding4.68E-02
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Gene type



Gene DE type