Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G62790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042407: cristae formation0.00E+00
2GO:0042821: pyridoxal biosynthetic process0.00E+00
3GO:0008618: 7-methylguanosine metabolic process0.00E+00
4GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
5GO:0071474: cellular hyperosmotic response0.00E+00
6GO:0015882: L-ascorbic acid transport0.00E+00
7GO:0018023: peptidyl-lysine trimethylation0.00E+00
8GO:1902458: positive regulation of stomatal opening0.00E+00
9GO:0070125: mitochondrial translational elongation0.00E+00
10GO:0034337: RNA folding0.00E+00
11GO:0036265: RNA (guanine-N7)-methylation0.00E+00
12GO:0006982: response to lipid hydroperoxide0.00E+00
13GO:0002184: cytoplasmic translational termination0.00E+00
14GO:0010335: response to non-ionic osmotic stress0.00E+00
15GO:0017038: protein import0.00E+00
16GO:0016553: base conversion or substitution editing0.00E+00
17GO:0090279: regulation of calcium ion import0.00E+00
18GO:0080094: response to trehalose-6-phosphate0.00E+00
19GO:0042820: vitamin B6 catabolic process0.00E+00
20GO:0090470: shoot organ boundary specification0.00E+00
21GO:0015995: chlorophyll biosynthetic process7.24E-15
22GO:0015979: photosynthesis1.95E-07
23GO:0006021: inositol biosynthetic process9.16E-07
24GO:0006782: protoporphyrinogen IX biosynthetic process1.32E-06
25GO:0045038: protein import into chloroplast thylakoid membrane2.05E-06
26GO:0010207: photosystem II assembly4.67E-06
27GO:1903426: regulation of reactive oxygen species biosynthetic process7.13E-06
28GO:2000070: regulation of response to water deprivation1.61E-05
29GO:0006783: heme biosynthetic process3.15E-05
30GO:0006779: porphyrin-containing compound biosynthetic process4.18E-05
31GO:0010027: thylakoid membrane organization1.25E-04
32GO:0009904: chloroplast accumulation movement1.48E-04
33GO:0046855: inositol phosphate dephosphorylation2.12E-04
34GO:0009903: chloroplast avoidance movement2.85E-04
35GO:0030488: tRNA methylation2.85E-04
36GO:1904966: positive regulation of vitamin E biosynthetic process3.99E-04
37GO:0043953: protein transport by the Tat complex3.99E-04
38GO:0000481: maturation of 5S rRNA3.99E-04
39GO:0006659: phosphatidylserine biosynthetic process3.99E-04
40GO:1904964: positive regulation of phytol biosynthetic process3.99E-04
41GO:0065002: intracellular protein transmembrane transport3.99E-04
42GO:0043686: co-translational protein modification3.99E-04
43GO:0010028: xanthophyll cycle3.99E-04
44GO:0009443: pyridoxal 5'-phosphate salvage3.99E-04
45GO:0006169: adenosine salvage3.99E-04
46GO:0009090: homoserine biosynthetic process3.99E-04
47GO:0010362: negative regulation of anion channel activity by blue light3.99E-04
48GO:0015969: guanosine tetraphosphate metabolic process3.99E-04
49GO:1902478: negative regulation of defense response to bacterium, incompatible interaction3.99E-04
50GO:0031426: polycistronic mRNA processing3.99E-04
51GO:0043489: RNA stabilization3.99E-04
52GO:0009791: post-embryonic development6.12E-04
53GO:0010206: photosystem II repair6.76E-04
54GO:0016032: viral process7.26E-04
55GO:0018026: peptidyl-lysine monomethylation8.66E-04
56GO:1902326: positive regulation of chlorophyll biosynthetic process8.66E-04
57GO:0006423: cysteinyl-tRNA aminoacylation8.66E-04
58GO:0006435: threonyl-tRNA aminoacylation8.66E-04
59GO:0010155: regulation of proton transport8.66E-04
60GO:0051262: protein tetramerization8.66E-04
61GO:0042819: vitamin B6 biosynthetic process8.66E-04
62GO:0018119: peptidyl-cysteine S-nitrosylation1.07E-03
63GO:0009089: lysine biosynthetic process via diaminopimelate1.07E-03
64GO:0016024: CDP-diacylglycerol biosynthetic process1.22E-03
65GO:0045037: protein import into chloroplast stroma1.22E-03
66GO:0006790: sulfur compound metabolic process1.22E-03
67GO:0009658: chloroplast organization1.27E-03
68GO:0080055: low-affinity nitrate transport1.40E-03
69GO:0051604: protein maturation1.40E-03
70GO:0045493: xylan catabolic process1.40E-03
71GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.40E-03
72GO:2001295: malonyl-CoA biosynthetic process1.40E-03
73GO:0000913: preprophase band assembly1.40E-03
74GO:0033591: response to L-ascorbic acid1.40E-03
75GO:0031022: nuclear migration along microfilament1.40E-03
76GO:0034051: negative regulation of plant-type hypersensitive response1.40E-03
77GO:0009793: embryo development ending in seed dormancy1.44E-03
78GO:0018298: protein-chromophore linkage1.48E-03
79GO:0046854: phosphatidylinositol phosphorylation1.75E-03
80GO:0007568: aging1.78E-03
81GO:0042823: pyridoxal phosphate biosynthetic process2.03E-03
82GO:0009067: aspartate family amino acid biosynthetic process2.03E-03
83GO:0010371: regulation of gibberellin biosynthetic process2.03E-03
84GO:0006020: inositol metabolic process2.03E-03
85GO:0009102: biotin biosynthetic process2.03E-03
86GO:1901000: regulation of response to salt stress2.03E-03
87GO:0033014: tetrapyrrole biosynthetic process2.03E-03
88GO:0010601: positive regulation of auxin biosynthetic process2.03E-03
89GO:0010239: chloroplast mRNA processing2.03E-03
90GO:0008615: pyridoxine biosynthetic process2.03E-03
91GO:0055114: oxidation-reduction process2.27E-03
92GO:0007017: microtubule-based process2.38E-03
93GO:0071483: cellular response to blue light2.73E-03
94GO:0010021: amylopectin biosynthetic process2.73E-03
95GO:0010109: regulation of photosynthesis2.73E-03
96GO:0009765: photosynthesis, light harvesting2.73E-03
97GO:2000306: positive regulation of photomorphogenesis2.73E-03
98GO:0015994: chlorophyll metabolic process2.73E-03
99GO:0009416: response to light stimulus3.01E-03
100GO:0006564: L-serine biosynthetic process3.49E-03
101GO:0016120: carotene biosynthetic process3.49E-03
102GO:0031365: N-terminal protein amino acid modification3.49E-03
103GO:0016123: xanthophyll biosynthetic process3.49E-03
104GO:0044209: AMP salvage3.49E-03
105GO:0000304: response to singlet oxygen3.49E-03
106GO:0018258: protein O-linked glycosylation via hydroxyproline4.32E-03
107GO:0010405: arabinogalactan protein metabolic process4.32E-03
108GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.32E-03
109GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.32E-03
110GO:0006655: phosphatidylglycerol biosynthetic process4.32E-03
111GO:0000470: maturation of LSU-rRNA4.32E-03
112GO:0010190: cytochrome b6f complex assembly4.32E-03
113GO:0045962: positive regulation of development, heterochronic4.32E-03
114GO:0007018: microtubule-based movement4.62E-03
115GO:0009646: response to absence of light4.62E-03
116GO:0009854: oxidative photosynthetic carbon pathway5.20E-03
117GO:1901259: chloroplast rRNA processing5.20E-03
118GO:0009088: threonine biosynthetic process5.20E-03
119GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.15E-03
120GO:0006400: tRNA modification6.15E-03
121GO:0048437: floral organ development6.15E-03
122GO:0006605: protein targeting7.15E-03
123GO:0032508: DNA duplex unwinding7.15E-03
124GO:0016559: peroxisome fission7.15E-03
125GO:0007186: G-protein coupled receptor signaling pathway8.21E-03
126GO:0032544: plastid translation8.21E-03
127GO:0071482: cellular response to light stimulus8.21E-03
128GO:0022900: electron transport chain8.21E-03
129GO:0015996: chlorophyll catabolic process8.21E-03
130GO:0048507: meristem development9.31E-03
131GO:0098656: anion transmembrane transport9.31E-03
132GO:0009086: methionine biosynthetic process1.05E-02
133GO:1900865: chloroplast RNA modification1.05E-02
134GO:0005982: starch metabolic process1.05E-02
135GO:0009638: phototropism1.05E-02
136GO:0043067: regulation of programmed cell death1.05E-02
137GO:0006811: ion transport1.11E-02
138GO:0006633: fatty acid biosynthetic process1.13E-02
139GO:0006535: cysteine biosynthetic process from serine1.17E-02
140GO:0009637: response to blue light1.28E-02
141GO:0007623: circadian rhythm1.28E-02
142GO:0009773: photosynthetic electron transport in photosystem I1.29E-02
143GO:0006352: DNA-templated transcription, initiation1.29E-02
144GO:0008285: negative regulation of cell proliferation1.29E-02
145GO:0009684: indoleacetic acid biosynthetic process1.29E-02
146GO:0019684: photosynthesis, light reaction1.29E-02
147GO:0009451: RNA modification1.32E-02
148GO:0010228: vegetative to reproductive phase transition of meristem1.35E-02
149GO:0006006: glucose metabolic process1.56E-02
150GO:0009785: blue light signaling pathway1.56E-02
151GO:0030036: actin cytoskeleton organization1.56E-02
152GO:0009718: anthocyanin-containing compound biosynthetic process1.56E-02
153GO:0009725: response to hormone1.56E-02
154GO:0009767: photosynthetic electron transport chain1.56E-02
155GO:0030048: actin filament-based movement1.56E-02
156GO:0009744: response to sucrose1.65E-02
157GO:0010020: chloroplast fission1.70E-02
158GO:0019253: reductive pentose-phosphate cycle1.70E-02
159GO:0009266: response to temperature stimulus1.70E-02
160GO:0010143: cutin biosynthetic process1.70E-02
161GO:0090351: seedling development1.84E-02
162GO:0019853: L-ascorbic acid biosynthetic process1.84E-02
163GO:0006508: proteolysis1.88E-02
164GO:0006855: drug transmembrane transport1.93E-02
165GO:0006636: unsaturated fatty acid biosynthetic process1.99E-02
166GO:0006289: nucleotide-excision repair2.14E-02
167GO:0009409: response to cold2.14E-02
168GO:0019344: cysteine biosynthetic process2.14E-02
169GO:0080147: root hair cell development2.14E-02
170GO:0009768: photosynthesis, light harvesting in photosystem I2.30E-02
171GO:0010073: meristem maintenance2.30E-02
172GO:0010431: seed maturation2.46E-02
173GO:0031408: oxylipin biosynthetic process2.46E-02
174GO:0061077: chaperone-mediated protein folding2.46E-02
175GO:0016114: terpenoid biosynthetic process2.46E-02
176GO:0035428: hexose transmembrane transport2.63E-02
177GO:0080092: regulation of pollen tube growth2.63E-02
178GO:0019748: secondary metabolic process2.63E-02
179GO:0016226: iron-sulfur cluster assembly2.63E-02
180GO:0006096: glycolytic process2.64E-02
181GO:0010227: floral organ abscission2.79E-02
182GO:0009735: response to cytokinin2.80E-02
183GO:0009306: protein secretion2.96E-02
184GO:0016117: carotenoid biosynthetic process3.14E-02
185GO:0051028: mRNA transport3.14E-02
186GO:0046777: protein autophosphorylation3.16E-02
187GO:0006396: RNA processing3.27E-02
188GO:0042335: cuticle development3.32E-02
189GO:0045489: pectin biosynthetic process3.50E-02
190GO:0010197: polar nucleus fusion3.50E-02
191GO:0010182: sugar mediated signaling pathway3.50E-02
192GO:0046323: glucose import3.50E-02
193GO:0009741: response to brassinosteroid3.50E-02
194GO:0006520: cellular amino acid metabolic process3.50E-02
195GO:0010183: pollen tube guidance3.87E-02
196GO:0019252: starch biosynthetic process3.87E-02
197GO:0008654: phospholipid biosynthetic process3.87E-02
198GO:0009556: microsporogenesis3.87E-02
199GO:0010583: response to cyclopentenone4.26E-02
200GO:0010090: trichome morphogenesis4.46E-02
201GO:0030163: protein catabolic process4.46E-02
202GO:0006457: protein folding4.63E-02
203GO:0009567: double fertilization forming a zygote and endosperm4.66E-02
204GO:0015031: protein transport4.94E-02
RankGO TermAdjusted P value
1GO:0015229: L-ascorbic acid transporter activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
4GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
5GO:0036033: mediator complex binding0.00E+00
6GO:0008176: tRNA (guanine-N7-)-methyltransferase activity0.00E+00
7GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
8GO:0005048: signal sequence binding0.00E+00
9GO:0004076: biotin synthase activity0.00E+00
10GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
11GO:0043864: indoleacetamide hydrolase activity0.00E+00
12GO:0008887: glycerate kinase activity0.00E+00
13GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
14GO:0050613: delta14-sterol reductase activity0.00E+00
15GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
16GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
17GO:0016851: magnesium chelatase activity5.38E-10
18GO:0008934: inositol monophosphate 1-phosphatase activity7.13E-06
19GO:0052833: inositol monophosphate 4-phosphatase activity7.13E-06
20GO:0009977: proton motive force dependent protein transmembrane transporter activity7.13E-06
21GO:0052832: inositol monophosphate 3-phosphatase activity7.13E-06
22GO:0005525: GTP binding1.07E-05
23GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.46E-05
24GO:0000293: ferric-chelate reductase activity2.12E-04
25GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.12E-04
26GO:0003924: GTPase activity2.33E-04
27GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.85E-04
28GO:0003723: RNA binding3.24E-04
29GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.99E-04
30GO:0004325: ferrochelatase activity3.99E-04
31GO:0042586: peptide deformylase activity3.99E-04
32GO:0004001: adenosine kinase activity3.99E-04
33GO:0010347: L-galactose-1-phosphate phosphatase activity3.99E-04
34GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.99E-04
35GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.99E-04
36GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.99E-04
37GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity3.99E-04
38GO:0005227: calcium activated cation channel activity3.99E-04
39GO:0004856: xylulokinase activity3.99E-04
40GO:0009496: plastoquinol--plastocyanin reductase activity3.99E-04
41GO:0008728: GTP diphosphokinase activity8.66E-04
42GO:0004412: homoserine dehydrogenase activity8.66E-04
43GO:0004512: inositol-3-phosphate synthase activity8.66E-04
44GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity8.66E-04
45GO:0050017: L-3-cyanoalanine synthase activity8.66E-04
46GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.66E-04
47GO:0048531: beta-1,3-galactosyltransferase activity8.66E-04
48GO:0042389: omega-3 fatty acid desaturase activity8.66E-04
49GO:0004617: phosphoglycerate dehydrogenase activity8.66E-04
50GO:0033201: alpha-1,4-glucan synthase activity8.66E-04
51GO:0004817: cysteine-tRNA ligase activity8.66E-04
52GO:0016630: protochlorophyllide reductase activity8.66E-04
53GO:0004829: threonine-tRNA ligase activity8.66E-04
54GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.66E-04
55GO:0016491: oxidoreductase activity8.96E-04
56GO:0005200: structural constituent of cytoskeleton9.17E-04
57GO:0003729: mRNA binding1.22E-03
58GO:0008236: serine-type peptidase activity1.39E-03
59GO:0003913: DNA photolyase activity1.40E-03
60GO:0004075: biotin carboxylase activity1.40E-03
61GO:0004148: dihydrolipoyl dehydrogenase activity1.40E-03
62GO:0070402: NADPH binding1.40E-03
63GO:0080054: low-affinity nitrate transmembrane transporter activity1.40E-03
64GO:0015462: ATPase-coupled protein transmembrane transporter activity1.40E-03
65GO:0005504: fatty acid binding1.40E-03
66GO:0004373: glycogen (starch) synthase activity1.40E-03
67GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.40E-03
68GO:0009882: blue light photoreceptor activity2.03E-03
69GO:0043023: ribosomal large subunit binding2.03E-03
70GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.03E-03
71GO:0004072: aspartate kinase activity2.03E-03
72GO:0048027: mRNA 5'-UTR binding2.03E-03
73GO:0004792: thiosulfate sulfurtransferase activity2.03E-03
74GO:0005528: FK506 binding2.16E-03
75GO:0043495: protein anchor2.73E-03
76GO:0046556: alpha-L-arabinofuranosidase activity2.73E-03
77GO:0016279: protein-lysine N-methyltransferase activity2.73E-03
78GO:0001053: plastid sigma factor activity2.73E-03
79GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.73E-03
80GO:0070628: proteasome binding2.73E-03
81GO:0045430: chalcone isomerase activity2.73E-03
82GO:0009011: starch synthase activity2.73E-03
83GO:0009044: xylan 1,4-beta-xylosidase activity2.73E-03
84GO:0016987: sigma factor activity2.73E-03
85GO:0016773: phosphotransferase activity, alcohol group as acceptor3.49E-03
86GO:0004040: amidase activity3.49E-03
87GO:0003989: acetyl-CoA carboxylase activity3.49E-03
88GO:0003959: NADPH dehydrogenase activity3.49E-03
89GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.32E-03
90GO:2001070: starch binding4.32E-03
91GO:1990714: hydroxyproline O-galactosyltransferase activity4.32E-03
92GO:0031593: polyubiquitin binding4.32E-03
93GO:0004629: phospholipase C activity4.32E-03
94GO:0004435: phosphatidylinositol phospholipase C activity5.20E-03
95GO:0016832: aldehyde-lyase activity5.20E-03
96GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.20E-03
97GO:0005261: cation channel activity5.20E-03
98GO:0009927: histidine phosphotransfer kinase activity5.20E-03
99GO:0004124: cysteine synthase activity5.20E-03
100GO:0019899: enzyme binding6.15E-03
101GO:0009881: photoreceptor activity6.15E-03
102GO:0043022: ribosome binding7.15E-03
103GO:0004033: aldo-keto reductase (NADP) activity7.15E-03
104GO:0008312: 7S RNA binding7.15E-03
105GO:0016597: amino acid binding7.26E-03
106GO:0016887: ATPase activity7.94E-03
107GO:0016168: chlorophyll binding8.14E-03
108GO:0008173: RNA methyltransferase activity8.21E-03
109GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.21E-03
110GO:0008135: translation factor activity, RNA binding8.21E-03
111GO:0019843: rRNA binding8.47E-03
112GO:0030955: potassium ion binding1.05E-02
113GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.05E-02
114GO:0004743: pyruvate kinase activity1.05E-02
115GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.17E-02
116GO:0005524: ATP binding1.23E-02
117GO:0003746: translation elongation factor activity1.28E-02
118GO:0008559: xenobiotic-transporting ATPase activity1.29E-02
119GO:0005089: Rho guanyl-nucleotide exchange factor activity1.29E-02
120GO:0003993: acid phosphatase activity1.34E-02
121GO:0008017: microtubule binding1.35E-02
122GO:0004565: beta-galactosidase activity1.56E-02
123GO:0005315: inorganic phosphate transmembrane transporter activity1.56E-02
124GO:0031072: heat shock protein binding1.56E-02
125GO:0000155: phosphorelay sensor kinase activity1.56E-02
126GO:0004185: serine-type carboxypeptidase activity1.65E-02
127GO:0030246: carbohydrate binding1.68E-02
128GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.70E-02
129GO:0008266: poly(U) RNA binding1.70E-02
130GO:0003774: motor activity1.70E-02
131GO:0042802: identical protein binding1.73E-02
132GO:0051537: 2 iron, 2 sulfur cluster binding1.79E-02
133GO:0031409: pigment binding1.99E-02
134GO:0051536: iron-sulfur cluster binding2.14E-02
135GO:0043130: ubiquitin binding2.14E-02
136GO:0003777: microtubule motor activity2.47E-02
137GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.73E-02
138GO:0022891: substrate-specific transmembrane transporter activity2.79E-02
139GO:0030570: pectate lyase activity2.79E-02
140GO:0005509: calcium ion binding2.92E-02
141GO:0008514: organic anion transmembrane transporter activity2.96E-02
142GO:0010181: FMN binding3.69E-02
143GO:0005355: glucose transmembrane transporter activity3.69E-02
144GO:0004872: receptor activity3.87E-02
145GO:0048038: quinone binding4.07E-02
146GO:0016740: transferase activity4.26E-02
147GO:0005515: protein binding4.36E-02
148GO:0004252: serine-type endopeptidase activity4.40E-02
149GO:0030170: pyridoxal phosphate binding4.40E-02
150GO:0016791: phosphatase activity4.66E-02
151GO:0003684: damaged DNA binding4.66E-02
152GO:0015144: carbohydrate transmembrane transporter activity4.74E-02
153GO:0008483: transaminase activity4.86E-02
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Gene type



Gene DE type