co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G60210

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009606: tropism	0.00E+00
2	GO:0090322: regulation of superoxide metabolic process	0.00E+00
3	GO:0000372: Group I intron splicing	0.00E+00
4	GO:0000492: box C/D snoRNP assembly	0.00E+00
5	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
6	GO:0045014: negative regulation of transcription by glucose	0.00E+00
7	GO:0000491: small nucleolar ribonucleoprotein complex assembly	0.00E+00
8	GO:0010588: cotyledon vascular tissue pattern formation	1.94E-05
9	GO:2000038: regulation of stomatal complex development	2.72E-05
10	GO:0010305: leaf vascular tissue pattern formation	1.19E-04
11	GO:0006353: DNA-templated transcription, termination	1.53E-04
12	GO:1903866: palisade mesophyll development	1.91E-04
13	GO:0033206: meiotic cytokinesis	1.91E-04
14	GO:0034757: negative regulation of iron ion transport	1.91E-04
15	GO:0048016: inositol phosphate-mediated signaling	1.91E-04
16	GO:0009734: auxin-activated signaling pathway	2.08E-04
17	GO:0009416: response to light stimulus	3.43E-04
18	GO:0046856: phosphatidylinositol dephosphorylation	3.78E-04
19	GO:0010569: regulation of double-strand break repair via homologous recombination	4.29E-04
20	GO:0010271: regulation of chlorophyll catabolic process	4.29E-04
21	GO:1900033: negative regulation of trichome patterning	4.29E-04
22	GO:2000123: positive regulation of stomatal complex development	4.29E-04
23	GO:0030001: metal ion transport	6.15E-04
24	GO:0080117: secondary growth	6.99E-04
25	GO:0090391: granum assembly	6.99E-04
26	GO:2000377: regulation of reactive oxygen species metabolic process	7.65E-04
27	GO:0006351: transcription, DNA-templated	9.31E-04
28	GO:0006168: adenine salvage	9.97E-04
29	GO:0006166: purine ribonucleoside salvage	9.97E-04
30	GO:0007276: gamete generation	9.97E-04
31	GO:0006808: regulation of nitrogen utilization	1.32E-03
32	GO:0048629: trichome patterning	1.32E-03
33	GO:1900864: mitochondrial RNA modification	1.32E-03
34	GO:0010051: xylem and phloem pattern formation	1.38E-03
35	GO:0010087: phloem or xylem histogenesis	1.38E-03
36	GO:0044209: AMP salvage	1.68E-03
37	GO:0032957: inositol trisphosphate metabolic process	1.68E-03
38	GO:0032876: negative regulation of DNA endoreduplication	1.68E-03
39	GO:0030308: negative regulation of cell growth	1.68E-03
40	GO:0010375: stomatal complex patterning	1.68E-03
41	GO:0009733: response to auxin	1.77E-03
42	GO:0045892: negative regulation of transcription, DNA-templated	1.95E-03
43	GO:0010315: auxin efflux	2.07E-03
44	GO:0035435: phosphate ion transmembrane transport	2.07E-03
45	GO:0046855: inositol phosphate dephosphorylation	2.07E-03
46	GO:0042793: transcription from plastid promoter	2.07E-03
47	GO:0048831: regulation of shoot system development	2.07E-03
48	GO:0009643: photosynthetic acclimation	2.07E-03
49	GO:0016554: cytidine to uridine editing	2.07E-03
50	GO:0010067: procambium histogenesis	2.49E-03
51	GO:2000033: regulation of seed dormancy process	2.49E-03
52	GO:0048509: regulation of meristem development	2.49E-03
53	GO:2000037: regulation of stomatal complex patterning	2.49E-03
54	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.49E-03
55	GO:0010310: regulation of hydrogen peroxide metabolic process	2.49E-03
56	GO:0010029: regulation of seed germination	2.78E-03
57	GO:0010103: stomatal complex morphogenesis	2.93E-03
58	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.93E-03
59	GO:0010374: stomatal complex development	2.93E-03
60	GO:0009642: response to light intensity	3.40E-03
61	GO:0042255: ribosome assembly	3.40E-03
62	GO:0048766: root hair initiation	3.40E-03
63	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	3.40E-03
64	GO:0010492: maintenance of shoot apical meristem identity	3.40E-03
65	GO:0009739: response to gibberellin	3.72E-03
66	GO:0007186: G-protein coupled receptor signaling pathway	3.88E-03
67	GO:0010233: phloem transport	3.88E-03
68	GO:0048574: long-day photoperiodism, flowering	3.88E-03
69	GO:0010052: guard cell differentiation	3.88E-03
70	GO:0032544: plastid translation	3.88E-03
71	GO:0007389: pattern specification process	3.88E-03
72	GO:0009880: embryonic pattern specification	3.88E-03
73	GO:0000373: Group II intron splicing	4.40E-03
74	GO:0048589: developmental growth	4.40E-03
75	GO:0009245: lipid A biosynthetic process	4.40E-03
76	GO:1900865: chloroplast RNA modification	4.93E-03
77	GO:0042761: very long-chain fatty acid biosynthetic process	4.93E-03
78	GO:0006535: cysteine biosynthetic process from serine	5.48E-03
79	GO:0048829: root cap development	5.48E-03
80	GO:0009750: response to fructose	6.06E-03
81	GO:0010152: pollen maturation	6.66E-03
82	GO:0008361: regulation of cell size	6.66E-03
83	GO:0012501: programmed cell death	6.66E-03
84	GO:0010102: lateral root morphogenesis	7.28E-03
85	GO:0010020: chloroplast fission	7.91E-03
86	GO:0006270: DNA replication initiation	7.91E-03
87	GO:0009887: animal organ morphogenesis	7.91E-03
88	GO:0080188: RNA-directed DNA methylation	8.57E-03
89	GO:0006355: regulation of transcription, DNA-templated	9.52E-03
90	GO:0009863: salicylic acid mediated signaling pathway	9.94E-03
91	GO:0010187: negative regulation of seed germination	9.94E-03
92	GO:0080147: root hair cell development	9.94E-03
93	GO:0019344: cysteine biosynthetic process	9.94E-03
94	GO:0009740: gibberellic acid mediated signaling pathway	1.01E-02
95	GO:0006825: copper ion transport	1.07E-02
96	GO:0006874: cellular calcium ion homeostasis	1.07E-02
97	GO:0003333: amino acid transmembrane transport	1.14E-02
98	GO:0071215: cellular response to abscisic acid stimulus	1.29E-02
99	GO:0010082: regulation of root meristem growth	1.29E-02
100	GO:0006284: base-excision repair	1.37E-02
101	GO:0042127: regulation of cell proliferation	1.37E-02
102	GO:0048443: stamen development	1.37E-02
103	GO:0070417: cellular response to cold	1.45E-02
104	GO:0080022: primary root development	1.53E-02
105	GO:0042631: cellular response to water deprivation	1.53E-02
106	GO:0009790: embryo development	1.57E-02
107	GO:0071472: cellular response to salt stress	1.62E-02
108	GO:0009958: positive gravitropism	1.62E-02
109	GO:0046323: glucose import	1.62E-02
110	GO:0007018: microtubule-based movement	1.70E-02
111	GO:0009749: response to glucose	1.79E-02
112	GO:0080156: mitochondrial mRNA modification	1.88E-02
113	GO:0032502: developmental process	1.97E-02
114	GO:0009630: gravitropism	1.97E-02
115	GO:0010090: trichome morphogenesis	2.06E-02
116	GO:0030163: protein catabolic process	2.06E-02
117	GO:0010252: auxin homeostasis	2.15E-02
118	GO:0019760: glucosinolate metabolic process	2.15E-02
119	GO:0007267: cell-cell signaling	2.25E-02
120	GO:0001666: response to hypoxia	2.44E-02
121	GO:0010027: thylakoid membrane organization	2.44E-02
122	GO:0009658: chloroplast organization	2.87E-02
123	GO:0048481: plant ovule development	2.95E-02
124	GO:0045893: positive regulation of transcription, DNA-templated	2.97E-02
125	GO:0048767: root hair elongation	3.05E-02
126	GO:0000160: phosphorelay signal transduction system	3.05E-02
127	GO:0006970: response to osmotic stress	3.09E-02
128	GO:0006811: ion transport	3.16E-02
129	GO:0010218: response to far red light	3.16E-02
130	GO:0009723: response to ethylene	3.32E-02
131	GO:0006865: amino acid transport	3.38E-02
132	GO:0016567: protein ubiquitination	3.47E-02
133	GO:0009867: jasmonic acid mediated signaling pathway	3.49E-02
134	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.68E-02
135	GO:0009926: auxin polar transport	4.18E-02
136	GO:0009744: response to sucrose	4.18E-02
137	GO:0051707: response to other organism	4.18E-02
138	GO:0009636: response to toxic substance	4.54E-02
139	GO:0006260: DNA replication	4.78E-02
140	GO:0042538: hyperosmotic salinity response	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity	0.00E+00
2	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	6.48E-05
3	GO:0004016: adenylate cyclase activity	1.91E-04
4	GO:0046030: inositol trisphosphate phosphatase activity	1.91E-04
5	GO:0009884: cytokinin receptor activity	4.29E-04
6	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.34E-04
7	GO:0003725: double-stranded RNA binding	4.93E-04
8	GO:0003697: single-stranded DNA binding	5.21E-04
9	GO:0005034: osmosensor activity	6.99E-04
10	GO:0003999: adenine phosphoribosyltransferase activity	9.97E-04
11	GO:0005354: galactose transmembrane transporter activity	9.97E-04
12	GO:0004930: G-protein coupled receptor activity	1.32E-03
13	GO:0010011: auxin binding	1.32E-03
14	GO:0003677: DNA binding	1.59E-03
15	GO:0008725: DNA-3-methyladenine glycosylase activity	1.68E-03
16	GO:0019901: protein kinase binding	1.71E-03
17	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.73E-03
18	GO:0004871: signal transducer activity	2.05E-03
19	GO:0031177: phosphopantetheine binding	2.07E-03
20	GO:0003688: DNA replication origin binding	2.07E-03
21	GO:0016832: aldehyde-lyase activity	2.49E-03
22	GO:0000035: acyl binding	2.49E-03
23	GO:0019900: kinase binding	2.49E-03
24	GO:0004124: cysteine synthase activity	2.49E-03
25	GO:0030515: snoRNA binding	2.93E-03
26	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.40E-03
27	GO:0000989: transcription factor activity, transcription factor binding	4.40E-03
28	GO:0009672: auxin:proton symporter activity	4.93E-03
29	GO:0003723: RNA binding	5.14E-03
30	GO:0004673: protein histidine kinase activity	5.48E-03
31	GO:0010329: auxin efflux transmembrane transporter activity	7.28E-03
32	GO:0000155: phosphorelay sensor kinase activity	7.28E-03
33	GO:0015114: phosphate ion transmembrane transporter activity	7.28E-03
34	GO:0003690: double-stranded DNA binding	7.77E-03
35	GO:0005217: intracellular ligand-gated ion channel activity	8.57E-03
36	GO:0004970: ionotropic glutamate receptor activity	8.57E-03
37	GO:0004190: aspartic-type endopeptidase activity	8.57E-03
38	GO:0042803: protein homodimerization activity	9.85E-03
39	GO:0003779: actin binding	1.04E-02
40	GO:0043424: protein histidine kinase binding	1.07E-02
41	GO:0030570: pectate lyase activity	1.29E-02
42	GO:0043565: sequence-specific DNA binding	1.30E-02
43	GO:0019843: rRNA binding	1.34E-02
44	GO:0004519: endonuclease activity	1.35E-02
45	GO:0003727: single-stranded RNA binding	1.37E-02
46	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.53E-02
47	GO:0005355: glucose transmembrane transporter activity	1.70E-02
48	GO:0016788: hydrolase activity, acting on ester bonds	2.93E-02
49	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.16E-02
50	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.27E-02
51	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.71E-02
52	GO:0052689: carboxylic ester hydrolase activity	3.93E-02
53	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	4.25E-02
54	GO:0043621: protein self-association	4.41E-02
55	GO:0015293: symporter activity	4.54E-02
56	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	4.73E-02