co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G59530

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006511: ubiquitin-dependent protein catabolic process	6.11E-07
2	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.51E-06
3	GO:0051788: response to misfolded protein	6.72E-05
4	GO:0051258: protein polymerization	6.72E-05
5	GO:0030433: ubiquitin-dependent ERAD pathway	6.90E-05
6	GO:0010498: proteasomal protein catabolic process	1.18E-04
7	GO:0008652: cellular amino acid biosynthetic process	1.18E-04
8	GO:0030163: protein catabolic process	1.58E-04
9	GO:0009963: positive regulation of flavonoid biosynthetic process	1.76E-04
10	GO:0009647: skotomorphogenesis	1.76E-04
11	GO:0010255: glucose mediated signaling pathway	1.76E-04
12	GO:0009823: cytokinin catabolic process	3.07E-04
13	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	3.78E-04
14	GO:0043248: proteasome assembly	3.78E-04
15	GO:0045040: protein import into mitochondrial outer membrane	3.78E-04
16	GO:0006694: steroid biosynthetic process	4.53E-04
17	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	4.53E-04
18	GO:0048528: post-embryonic root development	5.30E-04
19	GO:0031540: regulation of anthocyanin biosynthetic process	6.10E-04
20	GO:0046685: response to arsenic-containing substance	7.80E-04
21	GO:0030148: sphingolipid biosynthetic process	1.05E-03
22	GO:0010102: lateral root morphogenesis	1.25E-03
23	GO:0010223: secondary shoot formation	1.35E-03
24	GO:0010540: basipetal auxin transport	1.35E-03
25	GO:0009934: regulation of meristem structural organization	1.35E-03
26	GO:0048768: root hair cell tip growth	1.35E-03
27	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.53E-03
28	GO:0000162: tryptophan biosynthetic process	1.56E-03
29	GO:0080147: root hair cell development	1.67E-03
30	GO:0009625: response to insect	2.14E-03
31	GO:0016117: carotenoid biosynthetic process	2.39E-03
32	GO:0048825: cotyledon development	2.91E-03
33	GO:0006914: autophagy	3.47E-03
34	GO:0016126: sterol biosynthetic process	3.91E-03
35	GO:0016311: dephosphorylation	4.53E-03
36	GO:0048767: root hair elongation	4.85E-03
37	GO:0009813: flavonoid biosynthetic process	4.85E-03
38	GO:0006357: regulation of transcription from RNA polymerase II promoter	5.03E-03
39	GO:0006839: mitochondrial transport	6.04E-03
40	GO:0006887: exocytosis	6.21E-03
41	GO:0006631: fatty acid metabolic process	6.21E-03
42	GO:0009926: auxin polar transport	6.57E-03
43	GO:0009736: cytokinin-activated signaling pathway	8.08E-03
44	GO:0051603: proteolysis involved in cellular protein catabolic process	8.28E-03
45	GO:0009553: embryo sac development	1.01E-02
46	GO:0006396: RNA processing	1.06E-02
47	GO:0030154: cell differentiation	1.49E-02
48	GO:0009733: response to auxin	1.54E-02
49	GO:0009739: response to gibberellin	1.65E-02
50	GO:0007166: cell surface receptor signaling pathway	1.67E-02
51	GO:0046686: response to cadmium ion	2.14E-02
52	GO:0048366: leaf development	2.33E-02
53	GO:0080167: response to karrikin	2.42E-02
54	GO:0016192: vesicle-mediated transport	2.51E-02
55	GO:0015979: photosynthesis	2.66E-02
56	GO:0006468: protein phosphorylation	2.88E-02
57	GO:0009751: response to salicylic acid	3.16E-02
58	GO:0009408: response to heat	3.19E-02
59	GO:0009753: response to jasmonic acid	3.36E-02
60	GO:0016310: phosphorylation	3.36E-02
61	GO:0009734: auxin-activated signaling pathway	4.07E-02
62	GO:0009908: flower development	4.47E-02
63	GO:0009735: response to cytokinin	4.51E-02
64	GO:0009555: pollen development	4.80E-02
65	GO:0035556: intracellular signal transduction	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
2	GO:0004298: threonine-type endopeptidase activity	3.78E-09
3	GO:0008233: peptidase activity	4.81E-07
4	GO:0036402: proteasome-activating ATPase activity	2.51E-06
5	GO:0000215: tRNA 2'-phosphotransferase activity	2.64E-05
6	GO:0017025: TBP-class protein binding	3.84E-05
7	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	6.72E-05
8	GO:0045140: inositol phosphoceramide synthase activity	6.72E-05
9	GO:0052692: raffinose alpha-galactosidase activity	1.18E-04
10	GO:0004324: ferredoxin-NADP+ reductase activity	1.18E-04
11	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	1.18E-04
12	GO:0004557: alpha-galactosidase activity	1.18E-04
13	GO:0005504: fatty acid binding	1.18E-04
14	GO:0004834: tryptophan synthase activity	2.39E-04
15	GO:0045430: chalcone isomerase activity	2.39E-04
16	GO:0019139: cytokinin dehydrogenase activity	3.07E-04
17	GO:0008131: primary amine oxidase activity	1.35E-03
18	GO:0004725: protein tyrosine phosphatase activity	1.56E-03
19	GO:0043130: ubiquitin binding	1.67E-03
20	GO:0004540: ribonuclease activity	1.90E-03
21	GO:0048038: quinone binding	3.05E-03
22	GO:0008137: NADH dehydrogenase (ubiquinone) activity	3.05E-03
23	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	3.10E-03
24	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	3.45E-03
25	GO:0016791: phosphatase activity	3.47E-03
26	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	5.18E-03
27	GO:0004712: protein serine/threonine/tyrosine kinase activity	5.86E-03
28	GO:0016887: ATPase activity	5.89E-03
29	GO:0051539: 4 iron, 4 sulfur cluster binding	6.04E-03
30	GO:0016874: ligase activity	9.92E-03
31	GO:0003779: actin binding	1.01E-02
32	GO:0030170: pyridoxal phosphate binding	1.30E-02
33	GO:0004252: serine-type endopeptidase activity	1.30E-02
34	GO:0044212: transcription regulatory region DNA binding	1.37E-02
35	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.45E-02
36	GO:0043565: sequence-specific DNA binding	1.71E-02
37	GO:0050660: flavin adenine dinucleotide binding	2.30E-02
38	GO:0016301: kinase activity	2.33E-02
39	GO:0042803: protein homodimerization activity	2.84E-02