GO Enrichment Analysis of Co-expressed Genes with
AT5G59500
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 2 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 3 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 4 | GO:0000492: box C/D snoRNP assembly | 0.00E+00 |
| 5 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 6 | GO:0000491: small nucleolar ribonucleoprotein complex assembly | 0.00E+00 |
| 7 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 8 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 9 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 10 | GO:0009606: tropism | 0.00E+00 |
| 11 | GO:0009451: RNA modification | 8.74E-08 |
| 12 | GO:0006518: peptide metabolic process | 2.54E-05 |
| 13 | GO:1900865: chloroplast RNA modification | 4.31E-05 |
| 14 | GO:0009658: chloroplast organization | 4.87E-05 |
| 15 | GO:0009793: embryo development ending in seed dormancy | 1.90E-04 |
| 16 | GO:0009913: epidermal cell differentiation | 2.16E-04 |
| 17 | GO:0042793: transcription from plastid promoter | 2.16E-04 |
| 18 | GO:1901259: chloroplast rRNA processing | 2.91E-04 |
| 19 | GO:0009942: longitudinal axis specification | 2.91E-04 |
| 20 | GO:0006955: immune response | 3.76E-04 |
| 21 | GO:0048437: floral organ development | 3.76E-04 |
| 22 | GO:0010063: positive regulation of trichoblast fate specification | 4.05E-04 |
| 23 | GO:0010480: microsporocyte differentiation | 4.05E-04 |
| 24 | GO:0042759: long-chain fatty acid biosynthetic process | 4.05E-04 |
| 25 | GO:0006436: tryptophanyl-tRNA aminoacylation | 4.05E-04 |
| 26 | GO:0034757: negative regulation of iron ion transport | 4.05E-04 |
| 27 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 4.05E-04 |
| 28 | GO:1903866: palisade mesophyll development | 4.05E-04 |
| 29 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.93E-04 |
| 30 | GO:0009734: auxin-activated signaling pathway | 5.47E-04 |
| 31 | GO:0007389: pattern specification process | 5.75E-04 |
| 32 | GO:0010583: response to cyclopentenone | 7.44E-04 |
| 33 | GO:0048439: flower morphogenesis | 8.76E-04 |
| 34 | GO:0010271: regulation of chlorophyll catabolic process | 8.76E-04 |
| 35 | GO:0050688: regulation of defense response to virus | 8.76E-04 |
| 36 | GO:0010541: acropetal auxin transport | 8.76E-04 |
| 37 | GO:0018026: peptidyl-lysine monomethylation | 8.76E-04 |
| 38 | GO:0009662: etioplast organization | 8.76E-04 |
| 39 | GO:1904143: positive regulation of carotenoid biosynthetic process | 8.76E-04 |
| 40 | GO:0080009: mRNA methylation | 8.76E-04 |
| 41 | GO:0009875: pollen-pistil interaction | 8.76E-04 |
| 42 | GO:2000123: positive regulation of stomatal complex development | 8.76E-04 |
| 43 | GO:0010254: nectary development | 8.76E-04 |
| 44 | GO:0048255: mRNA stabilization | 8.76E-04 |
| 45 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 8.76E-04 |
| 46 | GO:0010569: regulation of double-strand break repair via homologous recombination | 8.76E-04 |
| 47 | GO:0010434: bract formation | 8.76E-04 |
| 48 | GO:0006535: cysteine biosynthetic process from serine | 9.46E-04 |
| 49 | GO:0048829: root cap development | 9.46E-04 |
| 50 | GO:0048229: gametophyte development | 1.09E-03 |
| 51 | GO:0009553: embryo sac development | 1.19E-03 |
| 52 | GO:0045037: protein import into chloroplast stroma | 1.24E-03 |
| 53 | GO:0042780: tRNA 3'-end processing | 1.42E-03 |
| 54 | GO:0001578: microtubule bundle formation | 1.42E-03 |
| 55 | GO:0009954: proximal/distal pattern formation | 1.42E-03 |
| 56 | GO:0009432: SOS response | 1.42E-03 |
| 57 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 1.42E-03 |
| 58 | GO:0045910: negative regulation of DNA recombination | 1.42E-03 |
| 59 | GO:0080117: secondary growth | 1.42E-03 |
| 60 | GO:0090391: granum assembly | 1.42E-03 |
| 61 | GO:0048481: plant ovule development | 1.52E-03 |
| 62 | GO:0080188: RNA-directed DNA methylation | 1.78E-03 |
| 63 | GO:0010025: wax biosynthetic process | 1.99E-03 |
| 64 | GO:0016556: mRNA modification | 2.06E-03 |
| 65 | GO:0009558: embryo sac cellularization | 2.06E-03 |
| 66 | GO:0000730: DNA recombinase assembly | 2.06E-03 |
| 67 | GO:0010371: regulation of gibberellin biosynthetic process | 2.06E-03 |
| 68 | GO:1902476: chloride transmembrane transport | 2.06E-03 |
| 69 | GO:0010071: root meristem specification | 2.06E-03 |
| 70 | GO:0051513: regulation of monopolar cell growth | 2.06E-03 |
| 71 | GO:0010239: chloroplast mRNA processing | 2.06E-03 |
| 72 | GO:0019344: cysteine biosynthetic process | 2.20E-03 |
| 73 | GO:0003333: amino acid transmembrane transport | 2.67E-03 |
| 74 | GO:0016998: cell wall macromolecule catabolic process | 2.67E-03 |
| 75 | GO:0006479: protein methylation | 2.76E-03 |
| 76 | GO:1900864: mitochondrial RNA modification | 2.76E-03 |
| 77 | GO:0051322: anaphase | 2.76E-03 |
| 78 | GO:0006221: pyrimidine nucleotide biosynthetic process | 2.76E-03 |
| 79 | GO:2000038: regulation of stomatal complex development | 2.76E-03 |
| 80 | GO:0042127: regulation of cell proliferation | 3.47E-03 |
| 81 | GO:0048497: maintenance of floral organ identity | 3.54E-03 |
| 82 | GO:0010375: stomatal complex patterning | 3.54E-03 |
| 83 | GO:0009616: virus induced gene silencing | 3.54E-03 |
| 84 | GO:0009736: cytokinin-activated signaling pathway | 4.16E-03 |
| 85 | GO:0010305: leaf vascular tissue pattern formation | 4.38E-03 |
| 86 | GO:0009643: photosynthetic acclimation | 4.38E-03 |
| 87 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 4.38E-03 |
| 88 | GO:0042549: photosystem II stabilization | 4.38E-03 |
| 89 | GO:0009959: negative gravitropism | 4.38E-03 |
| 90 | GO:0016554: cytidine to uridine editing | 4.38E-03 |
| 91 | GO:0010315: auxin efflux | 4.38E-03 |
| 92 | GO:0060918: auxin transport | 4.38E-03 |
| 93 | GO:0048831: regulation of shoot system development | 4.38E-03 |
| 94 | GO:0007018: microtubule-based movement | 4.71E-03 |
| 95 | GO:0048825: cotyledon development | 5.06E-03 |
| 96 | GO:0009082: branched-chain amino acid biosynthetic process | 5.27E-03 |
| 97 | GO:0048509: regulation of meristem development | 5.27E-03 |
| 98 | GO:0009099: valine biosynthetic process | 5.27E-03 |
| 99 | GO:0010310: regulation of hydrogen peroxide metabolic process | 5.27E-03 |
| 100 | GO:0009955: adaxial/abaxial pattern specification | 5.27E-03 |
| 101 | GO:0080156: mitochondrial mRNA modification | 5.42E-03 |
| 102 | GO:0010103: stomatal complex morphogenesis | 6.23E-03 |
| 103 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 6.23E-03 |
| 104 | GO:0042148: strand invasion | 6.23E-03 |
| 105 | GO:0010050: vegetative phase change | 6.23E-03 |
| 106 | GO:0006821: chloride transport | 6.23E-03 |
| 107 | GO:0010252: auxin homeostasis | 6.57E-03 |
| 108 | GO:0006396: RNA processing | 6.77E-03 |
| 109 | GO:0048366: leaf development | 7.18E-03 |
| 110 | GO:0009642: response to light intensity | 7.25E-03 |
| 111 | GO:0001522: pseudouridine synthesis | 7.25E-03 |
| 112 | GO:0030162: regulation of proteolysis | 7.25E-03 |
| 113 | GO:0048766: root hair initiation | 7.25E-03 |
| 114 | GO:0000910: cytokinesis | 7.41E-03 |
| 115 | GO:0010027: thylakoid membrane organization | 7.85E-03 |
| 116 | GO:0009097: isoleucine biosynthetic process | 8.32E-03 |
| 117 | GO:0032544: plastid translation | 8.32E-03 |
| 118 | GO:0010212: response to ionizing radiation | 8.32E-03 |
| 119 | GO:0019430: removal of superoxide radicals | 8.32E-03 |
| 120 | GO:0009657: plastid organization | 8.32E-03 |
| 121 | GO:0000373: Group II intron splicing | 9.45E-03 |
| 122 | GO:0048589: developmental growth | 9.45E-03 |
| 123 | GO:0000902: cell morphogenesis | 9.45E-03 |
| 124 | GO:0009416: response to light stimulus | 1.04E-02 |
| 125 | GO:0010267: production of ta-siRNAs involved in RNA interference | 1.06E-02 |
| 126 | GO:0009790: embryo development | 1.06E-02 |
| 127 | GO:0006349: regulation of gene expression by genetic imprinting | 1.06E-02 |
| 128 | GO:0031425: chloroplast RNA processing | 1.06E-02 |
| 129 | GO:0000160: phosphorelay signal transduction system | 1.08E-02 |
| 130 | GO:0006298: mismatch repair | 1.19E-02 |
| 131 | GO:0010048: vernalization response | 1.19E-02 |
| 132 | GO:0040008: regulation of growth | 1.24E-02 |
| 133 | GO:0006865: amino acid transport | 1.25E-02 |
| 134 | GO:1903507: negative regulation of nucleic acid-templated transcription | 1.31E-02 |
| 135 | GO:0009750: response to fructose | 1.31E-02 |
| 136 | GO:0046856: phosphatidylinositol dephosphorylation | 1.31E-02 |
| 137 | GO:0010582: floral meristem determinacy | 1.45E-02 |
| 138 | GO:0006312: mitotic recombination | 1.45E-02 |
| 139 | GO:0012501: programmed cell death | 1.45E-02 |
| 140 | GO:0010152: pollen maturation | 1.45E-02 |
| 141 | GO:0009691: cytokinin biosynthetic process | 1.58E-02 |
| 142 | GO:0010075: regulation of meristem growth | 1.58E-02 |
| 143 | GO:0010588: cotyledon vascular tissue pattern formation | 1.58E-02 |
| 144 | GO:0010102: lateral root morphogenesis | 1.58E-02 |
| 145 | GO:0009926: auxin polar transport | 1.69E-02 |
| 146 | GO:0010540: basipetal auxin transport | 1.73E-02 |
| 147 | GO:0009934: regulation of meristem structural organization | 1.73E-02 |
| 148 | GO:0048768: root hair cell tip growth | 1.73E-02 |
| 149 | GO:0010020: chloroplast fission | 1.73E-02 |
| 150 | GO:0006508: proteolysis | 1.96E-02 |
| 151 | GO:2000377: regulation of reactive oxygen species metabolic process | 2.18E-02 |
| 152 | GO:0009944: polarity specification of adaxial/abaxial axis | 2.18E-02 |
| 153 | GO:0010073: meristem maintenance | 2.33E-02 |
| 154 | GO:0006418: tRNA aminoacylation for protein translation | 2.33E-02 |
| 155 | GO:0010431: seed maturation | 2.50E-02 |
| 156 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 2.66E-02 |
| 157 | GO:0010227: floral organ abscission | 2.83E-02 |
| 158 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.83E-02 |
| 159 | GO:0071215: cellular response to abscisic acid stimulus | 2.83E-02 |
| 160 | GO:0010082: regulation of root meristem growth | 2.83E-02 |
| 161 | GO:0048443: stamen development | 3.01E-02 |
| 162 | GO:0070417: cellular response to cold | 3.19E-02 |
| 163 | GO:0000271: polysaccharide biosynthetic process | 3.37E-02 |
| 164 | GO:0008033: tRNA processing | 3.37E-02 |
| 165 | GO:0010087: phloem or xylem histogenesis | 3.37E-02 |
| 166 | GO:0048653: anther development | 3.37E-02 |
| 167 | GO:0000226: microtubule cytoskeleton organization | 3.37E-02 |
| 168 | GO:0048868: pollen tube development | 3.55E-02 |
| 169 | GO:0009741: response to brassinosteroid | 3.55E-02 |
| 170 | GO:0009960: endosperm development | 3.55E-02 |
| 171 | GO:0045489: pectin biosynthetic process | 3.55E-02 |
| 172 | GO:0009958: positive gravitropism | 3.55E-02 |
| 173 | GO:0071472: cellular response to salt stress | 3.55E-02 |
| 174 | GO:0006814: sodium ion transport | 3.74E-02 |
| 175 | GO:0009646: response to absence of light | 3.74E-02 |
| 176 | GO:0009749: response to glucose | 3.93E-02 |
| 177 | GO:0009851: auxin biosynthetic process | 3.93E-02 |
| 178 | GO:0010183: pollen tube guidance | 3.93E-02 |
| 179 | GO:0032502: developmental process | 4.32E-02 |
| 180 | GO:0009630: gravitropism | 4.32E-02 |
| 181 | GO:0016032: viral process | 4.32E-02 |
| 182 | GO:0009845: seed germination | 4.38E-02 |
| 183 | GO:0030163: protein catabolic process | 4.52E-02 |
| 184 | GO:0042744: hydrogen peroxide catabolic process | 4.60E-02 |
| 185 | GO:0009828: plant-type cell wall loosening | 4.73E-02 |
| 186 | GO:0006310: DNA recombination | 4.73E-02 |
| 187 | GO:0009639: response to red or far red light | 4.73E-02 |
| 188 | GO:0007267: cell-cell signaling | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
| 2 | GO:0042834: peptidoglycan binding | 0.00E+00 |
| 3 | GO:0004519: endonuclease activity | 5.34E-11 |
| 4 | GO:0003723: RNA binding | 1.99E-07 |
| 5 | GO:0004222: metalloendopeptidase activity | 2.20E-05 |
| 6 | GO:0008173: RNA methyltransferase activity | 2.37E-05 |
| 7 | GO:0004124: cysteine synthase activity | 2.91E-04 |
| 8 | GO:0004160: dihydroxy-acid dehydratase activity | 4.05E-04 |
| 9 | GO:0004830: tryptophan-tRNA ligase activity | 4.05E-04 |
| 10 | GO:0004016: adenylate cyclase activity | 4.05E-04 |
| 11 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 4.05E-04 |
| 12 | GO:0016274: protein-arginine N-methyltransferase activity | 4.05E-04 |
| 13 | GO:0052381: tRNA dimethylallyltransferase activity | 4.05E-04 |
| 14 | GO:0016887: ATPase activity | 6.77E-04 |
| 15 | GO:0009672: auxin:proton symporter activity | 8.13E-04 |
| 16 | GO:0016868: intramolecular transferase activity, phosphotransferases | 8.76E-04 |
| 17 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 8.76E-04 |
| 18 | GO:0009884: cytokinin receptor activity | 8.76E-04 |
| 19 | GO:0008237: metallopeptidase activity | 9.40E-04 |
| 20 | GO:0010329: auxin efflux transmembrane transporter activity | 1.41E-03 |
| 21 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 1.42E-03 |
| 22 | GO:0016805: dipeptidase activity | 1.42E-03 |
| 23 | GO:0005034: osmosensor activity | 1.42E-03 |
| 24 | GO:0017150: tRNA dihydrouridine synthase activity | 1.42E-03 |
| 25 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 1.42E-03 |
| 26 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.59E-03 |
| 27 | GO:0019843: rRNA binding | 1.75E-03 |
| 28 | GO:0008508: bile acid:sodium symporter activity | 2.06E-03 |
| 29 | GO:0001872: (1->3)-beta-D-glucan binding | 2.06E-03 |
| 30 | GO:0009041: uridylate kinase activity | 2.06E-03 |
| 31 | GO:0004176: ATP-dependent peptidase activity | 2.67E-03 |
| 32 | GO:0005253: anion channel activity | 2.76E-03 |
| 33 | GO:0016279: protein-lysine N-methyltransferase activity | 2.76E-03 |
| 34 | GO:0010011: auxin binding | 2.76E-03 |
| 35 | GO:0016836: hydro-lyase activity | 2.76E-03 |
| 36 | GO:0010328: auxin influx transmembrane transporter activity | 2.76E-03 |
| 37 | GO:0030570: pectate lyase activity | 3.19E-03 |
| 38 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 3.54E-03 |
| 39 | GO:0003989: acetyl-CoA carboxylase activity | 3.54E-03 |
| 40 | GO:0005247: voltage-gated chloride channel activity | 4.38E-03 |
| 41 | GO:0030983: mismatched DNA binding | 4.38E-03 |
| 42 | GO:0004784: superoxide dismutase activity | 4.38E-03 |
| 43 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 4.38E-03 |
| 44 | GO:0003777: microtubule motor activity | 4.73E-03 |
| 45 | GO:0019901: protein kinase binding | 5.06E-03 |
| 46 | GO:0019900: kinase binding | 5.27E-03 |
| 47 | GO:0005215: transporter activity | 5.32E-03 |
| 48 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 5.41E-03 |
| 49 | GO:0030515: snoRNA binding | 6.23E-03 |
| 50 | GO:0000150: recombinase activity | 6.23E-03 |
| 51 | GO:0004520: endodeoxyribonuclease activity | 7.25E-03 |
| 52 | GO:0000400: four-way junction DNA binding | 7.25E-03 |
| 53 | GO:0004673: protein histidine kinase activity | 1.19E-02 |
| 54 | GO:0003697: single-stranded DNA binding | 1.30E-02 |
| 55 | GO:0008559: xenobiotic-transporting ATPase activity | 1.31E-02 |
| 56 | GO:0005524: ATP binding | 1.35E-02 |
| 57 | GO:0008017: microtubule binding | 1.39E-02 |
| 58 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 1.45E-02 |
| 59 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.49E-02 |
| 60 | GO:0000155: phosphorelay sensor kinase activity | 1.58E-02 |
| 61 | GO:0009982: pseudouridine synthase activity | 1.58E-02 |
| 62 | GO:0003725: double-stranded RNA binding | 1.58E-02 |
| 63 | GO:0004190: aspartic-type endopeptidase activity | 1.87E-02 |
| 64 | GO:0015293: symporter activity | 1.90E-02 |
| 65 | GO:0008168: methyltransferase activity | 2.17E-02 |
| 66 | GO:0003714: transcription corepressor activity | 2.18E-02 |
| 67 | GO:0004601: peroxidase activity | 2.28E-02 |
| 68 | GO:0043424: protein histidine kinase binding | 2.33E-02 |
| 69 | GO:0003690: double-stranded DNA binding | 2.36E-02 |
| 70 | GO:0033612: receptor serine/threonine kinase binding | 2.50E-02 |
| 71 | GO:0008094: DNA-dependent ATPase activity | 2.50E-02 |
| 72 | GO:0015171: amino acid transmembrane transporter activity | 2.52E-02 |
| 73 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 2.66E-02 |
| 74 | GO:0003727: single-stranded RNA binding | 3.01E-02 |
| 75 | GO:0003779: actin binding | 3.15E-02 |
| 76 | GO:0004812: aminoacyl-tRNA ligase activity | 3.19E-02 |
| 77 | GO:0018024: histone-lysine N-methyltransferase activity | 3.19E-02 |
| 78 | GO:0004386: helicase activity | 3.53E-02 |
| 79 | GO:0003713: transcription coactivator activity | 3.55E-02 |
| 80 | GO:0001085: RNA polymerase II transcription factor binding | 3.55E-02 |
| 81 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 4.12E-02 |
| 82 | GO:0000156: phosphorelay response regulator activity | 4.52E-02 |
| 83 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 4.60E-02 |
| 84 | GO:0003684: damaged DNA binding | 4.73E-02 |
| 85 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 4.93E-02 |
| 86 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 4.93E-02 |