GO Enrichment Analysis of Co-expressed Genes with
AT5G58960
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 2 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 3 | GO:0009606: tropism | 0.00E+00 |
| 4 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 5 | GO:0080127: fruit septum development | 0.00E+00 |
| 6 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 7 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 8 | GO:0000492: box C/D snoRNP assembly | 0.00E+00 |
| 9 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 10 | GO:0000491: small nucleolar ribonucleoprotein complex assembly | 0.00E+00 |
| 11 | GO:0009102: biotin biosynthetic process | 2.11E-05 |
| 12 | GO:0009913: epidermal cell differentiation | 9.03E-05 |
| 13 | GO:0010305: leaf vascular tissue pattern formation | 1.80E-04 |
| 14 | GO:0000373: Group II intron splicing | 3.13E-04 |
| 15 | GO:1900865: chloroplast RNA modification | 3.73E-04 |
| 16 | GO:0009734: auxin-activated signaling pathway | 3.92E-04 |
| 17 | GO:0048829: root cap development | 4.36E-04 |
| 18 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.92E-04 |
| 19 | GO:0010541: acropetal auxin transport | 5.20E-04 |
| 20 | GO:1900033: negative regulation of trichome patterning | 5.20E-04 |
| 21 | GO:0080009: mRNA methylation | 5.20E-04 |
| 22 | GO:0051214: RNA virus induced gene silencing | 5.20E-04 |
| 23 | GO:2000123: positive regulation of stomatal complex development | 5.20E-04 |
| 24 | GO:0010588: cotyledon vascular tissue pattern formation | 6.54E-04 |
| 25 | GO:0010540: basipetal auxin transport | 7.36E-04 |
| 26 | GO:0006518: peptide metabolic process | 8.44E-04 |
| 27 | GO:0030029: actin filament-based process | 8.44E-04 |
| 28 | GO:0001927: exocyst assembly | 8.44E-04 |
| 29 | GO:0051601: exocyst localization | 1.20E-03 |
| 30 | GO:0010371: regulation of gibberellin biosynthetic process | 1.20E-03 |
| 31 | GO:0051513: regulation of monopolar cell growth | 1.20E-03 |
| 32 | GO:0003333: amino acid transmembrane transport | 1.21E-03 |
| 33 | GO:2000038: regulation of stomatal complex development | 1.61E-03 |
| 34 | GO:0009956: radial pattern formation | 1.61E-03 |
| 35 | GO:0006479: protein methylation | 1.61E-03 |
| 36 | GO:0048629: trichome patterning | 1.61E-03 |
| 37 | GO:1900864: mitochondrial RNA modification | 1.61E-03 |
| 38 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.61E-03 |
| 39 | GO:0080110: sporopollenin biosynthetic process | 2.05E-03 |
| 40 | GO:0048497: maintenance of floral organ identity | 2.05E-03 |
| 41 | GO:0010375: stomatal complex patterning | 2.05E-03 |
| 42 | GO:0048825: cotyledon development | 2.27E-03 |
| 43 | GO:0080156: mitochondrial mRNA modification | 2.43E-03 |
| 44 | GO:0010315: auxin efflux | 2.52E-03 |
| 45 | GO:0003006: developmental process involved in reproduction | 2.52E-03 |
| 46 | GO:0042549: photosystem II stabilization | 2.52E-03 |
| 47 | GO:0009416: response to light stimulus | 2.52E-03 |
| 48 | GO:0016554: cytidine to uridine editing | 2.52E-03 |
| 49 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 3.03E-03 |
| 50 | GO:0009733: response to auxin | 3.18E-03 |
| 51 | GO:0009845: seed germination | 3.43E-03 |
| 52 | GO:0010103: stomatal complex morphogenesis | 3.58E-03 |
| 53 | GO:0042255: ribosome assembly | 4.15E-03 |
| 54 | GO:0046620: regulation of organ growth | 4.15E-03 |
| 55 | GO:0006353: DNA-templated transcription, termination | 4.15E-03 |
| 56 | GO:0048766: root hair initiation | 4.15E-03 |
| 57 | GO:0048564: photosystem I assembly | 4.15E-03 |
| 58 | GO:0045292: mRNA cis splicing, via spliceosome | 4.15E-03 |
| 59 | GO:0040008: regulation of growth | 4.41E-03 |
| 60 | GO:0009657: plastid organization | 4.74E-03 |
| 61 | GO:0007389: pattern specification process | 4.74E-03 |
| 62 | GO:0060321: acceptance of pollen | 4.74E-03 |
| 63 | GO:0048507: meristem development | 5.37E-03 |
| 64 | GO:0006379: mRNA cleavage | 5.37E-03 |
| 65 | GO:0048589: developmental growth | 5.37E-03 |
| 66 | GO:0006865: amino acid transport | 5.53E-03 |
| 67 | GO:0010267: production of ta-siRNAs involved in RNA interference | 6.03E-03 |
| 68 | GO:0006349: regulation of gene expression by genetic imprinting | 6.03E-03 |
| 69 | GO:0016571: histone methylation | 6.03E-03 |
| 70 | GO:0016573: histone acetylation | 6.03E-03 |
| 71 | GO:0030422: production of siRNA involved in RNA interference | 6.71E-03 |
| 72 | GO:0010048: vernalization response | 6.71E-03 |
| 73 | GO:1903507: negative regulation of nucleic acid-templated transcription | 7.43E-03 |
| 74 | GO:0009750: response to fructose | 7.43E-03 |
| 75 | GO:0010216: maintenance of DNA methylation | 7.43E-03 |
| 76 | GO:0046856: phosphatidylinositol dephosphorylation | 7.43E-03 |
| 77 | GO:0009926: auxin polar transport | 7.46E-03 |
| 78 | GO:0010582: floral meristem determinacy | 8.17E-03 |
| 79 | GO:0010152: pollen maturation | 8.17E-03 |
| 80 | GO:0012501: programmed cell death | 8.17E-03 |
| 81 | GO:0010102: lateral root morphogenesis | 8.93E-03 |
| 82 | GO:0010020: chloroplast fission | 9.72E-03 |
| 83 | GO:0009933: meristem structural organization | 9.72E-03 |
| 84 | GO:0009266: response to temperature stimulus | 9.72E-03 |
| 85 | GO:0048768: root hair cell tip growth | 9.72E-03 |
| 86 | GO:0048467: gynoecium development | 9.72E-03 |
| 87 | GO:0009825: multidimensional cell growth | 1.05E-02 |
| 88 | GO:0006338: chromatin remodeling | 1.22E-02 |
| 89 | GO:0080147: root hair cell development | 1.22E-02 |
| 90 | GO:2000377: regulation of reactive oxygen species metabolic process | 1.22E-02 |
| 91 | GO:0048367: shoot system development | 1.23E-02 |
| 92 | GO:0009793: embryo development ending in seed dormancy | 1.31E-02 |
| 93 | GO:0016569: covalent chromatin modification | 1.35E-02 |
| 94 | GO:0045892: negative regulation of transcription, DNA-templated | 1.38E-02 |
| 95 | GO:0010431: seed maturation | 1.40E-02 |
| 96 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.50E-02 |
| 97 | GO:0010082: regulation of root meristem growth | 1.59E-02 |
| 98 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.59E-02 |
| 99 | GO:0006284: base-excision repair | 1.69E-02 |
| 100 | GO:0042127: regulation of cell proliferation | 1.69E-02 |
| 101 | GO:0010584: pollen exine formation | 1.69E-02 |
| 102 | GO:0048443: stamen development | 1.69E-02 |
| 103 | GO:0005975: carbohydrate metabolic process | 1.78E-02 |
| 104 | GO:0006397: mRNA processing | 1.86E-02 |
| 105 | GO:0080022: primary root development | 1.89E-02 |
| 106 | GO:0010087: phloem or xylem histogenesis | 1.89E-02 |
| 107 | GO:0009058: biosynthetic process | 1.90E-02 |
| 108 | GO:0071472: cellular response to salt stress | 1.99E-02 |
| 109 | GO:0009958: positive gravitropism | 1.99E-02 |
| 110 | GO:0009960: endosperm development | 1.99E-02 |
| 111 | GO:0007018: microtubule-based movement | 2.10E-02 |
| 112 | GO:0009749: response to glucose | 2.20E-02 |
| 113 | GO:0006351: transcription, DNA-templated | 2.23E-02 |
| 114 | GO:0010583: response to cyclopentenone | 2.42E-02 |
| 115 | GO:0031047: gene silencing by RNA | 2.42E-02 |
| 116 | GO:0009630: gravitropism | 2.42E-02 |
| 117 | GO:0006468: protein phosphorylation | 2.48E-02 |
| 118 | GO:0030163: protein catabolic process | 2.54E-02 |
| 119 | GO:0009451: RNA modification | 2.55E-02 |
| 120 | GO:0010252: auxin homeostasis | 2.65E-02 |
| 121 | GO:0009828: plant-type cell wall loosening | 2.65E-02 |
| 122 | GO:0007267: cell-cell signaling | 2.77E-02 |
| 123 | GO:0051607: defense response to virus | 2.89E-02 |
| 124 | GO:0006355: regulation of transcription, DNA-templated | 2.92E-02 |
| 125 | GO:0009908: flower development | 3.18E-02 |
| 126 | GO:0048481: plant ovule development | 3.63E-02 |
| 127 | GO:0048767: root hair elongation | 3.76E-02 |
| 128 | GO:0009658: chloroplast organization | 3.85E-02 |
| 129 | GO:0009910: negative regulation of flower development | 4.03E-02 |
| 130 | GO:0006839: mitochondrial transport | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008710: 8-amino-7-oxononanoate synthase activity | 0.00E+00 |
| 2 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
| 3 | GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity | 0.00E+00 |
| 4 | GO:0004141: dethiobiotin synthase activity | 0.00E+00 |
| 5 | GO:0016274: protein-arginine N-methyltransferase activity | 2.34E-04 |
| 6 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 2.34E-04 |
| 7 | GO:0004016: adenylate cyclase activity | 2.34E-04 |
| 8 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 2.34E-04 |
| 9 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 5.20E-04 |
| 10 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 5.20E-04 |
| 11 | GO:0003725: double-stranded RNA binding | 6.54E-04 |
| 12 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 8.44E-04 |
| 13 | GO:0004519: endonuclease activity | 1.07E-03 |
| 14 | GO:0009041: uridylate kinase activity | 1.20E-03 |
| 15 | GO:0003727: single-stranded RNA binding | 1.57E-03 |
| 16 | GO:0010011: auxin binding | 1.61E-03 |
| 17 | GO:0010328: auxin influx transmembrane transporter activity | 1.61E-03 |
| 18 | GO:0003723: RNA binding | 1.80E-03 |
| 19 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.05E-03 |
| 20 | GO:0019901: protein kinase binding | 2.27E-03 |
| 21 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 2.52E-03 |
| 22 | GO:0016208: AMP binding | 2.52E-03 |
| 23 | GO:0005200: structural constituent of cytoskeleton | 3.12E-03 |
| 24 | GO:0030515: snoRNA binding | 3.58E-03 |
| 25 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 3.66E-03 |
| 26 | GO:0004525: ribonuclease III activity | 4.15E-03 |
| 27 | GO:0004222: metalloendopeptidase activity | 5.04E-03 |
| 28 | GO:0009672: auxin:proton symporter activity | 6.03E-03 |
| 29 | GO:0008168: methyltransferase activity | 7.77E-03 |
| 30 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 8.17E-03 |
| 31 | GO:0015293: symporter activity | 8.39E-03 |
| 32 | GO:0010329: auxin efflux transmembrane transporter activity | 8.93E-03 |
| 33 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 9.72E-03 |
| 34 | GO:0004190: aspartic-type endopeptidase activity | 1.05E-02 |
| 35 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 1.11E-02 |
| 36 | GO:0015171: amino acid transmembrane transporter activity | 1.12E-02 |
| 37 | GO:0003714: transcription corepressor activity | 1.22E-02 |
| 38 | GO:0004650: polygalacturonase activity | 1.31E-02 |
| 39 | GO:0003779: actin binding | 1.40E-02 |
| 40 | GO:0004871: signal transducer activity | 1.43E-02 |
| 41 | GO:0018024: histone-lysine N-methyltransferase activity | 1.79E-02 |
| 42 | GO:0001085: RNA polymerase II transcription factor binding | 1.99E-02 |
| 43 | GO:0030170: pyridoxal phosphate binding | 2.00E-02 |
| 44 | GO:0050662: coenzyme binding | 2.10E-02 |
| 45 | GO:0004674: protein serine/threonine kinase activity | 2.23E-02 |
| 46 | GO:0048038: quinone binding | 2.31E-02 |
| 47 | GO:0008289: lipid binding | 2.66E-02 |
| 48 | GO:0008483: transaminase activity | 2.77E-02 |
| 49 | GO:0005096: GTPase activator activity | 3.76E-02 |
| 50 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.89E-02 |
| 51 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 4.03E-02 |
| 52 | GO:0003697: single-stranded DNA binding | 4.30E-02 |
| 53 | GO:0005515: protein binding | 4.60E-02 |
| 54 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.71E-02 |
| 55 | GO:0004672: protein kinase activity | 4.90E-02 |