GO Enrichment Analysis of Co-expressed Genes with
AT5G57890
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043488: regulation of mRNA stability | 0.00E+00 |
| 2 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 3 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 4 | GO:0007037: vacuolar phosphate transport | 0.00E+00 |
| 5 | GO:2001294: malonyl-CoA catabolic process | 0.00E+00 |
| 6 | GO:0009647: skotomorphogenesis | 3.45E-05 |
| 7 | GO:0006021: inositol biosynthetic process | 6.18E-05 |
| 8 | GO:0045038: protein import into chloroplast thylakoid membrane | 9.74E-05 |
| 9 | GO:1902183: regulation of shoot apical meristem development | 9.74E-05 |
| 10 | GO:0010158: abaxial cell fate specification | 9.74E-05 |
| 11 | GO:0009395: phospholipid catabolic process | 2.51E-04 |
| 12 | GO:0000481: maturation of 5S rRNA | 3.09E-04 |
| 13 | GO:0006659: phosphatidylserine biosynthetic process | 3.09E-04 |
| 14 | GO:1902458: positive regulation of stomatal opening | 3.09E-04 |
| 15 | GO:0034337: RNA folding | 3.09E-04 |
| 16 | GO:0010450: inflorescence meristem growth | 3.09E-04 |
| 17 | GO:0051171: regulation of nitrogen compound metabolic process | 3.09E-04 |
| 18 | GO:0010362: negative regulation of anion channel activity by blue light | 3.09E-04 |
| 19 | GO:0007155: cell adhesion | 3.17E-04 |
| 20 | GO:2000024: regulation of leaf development | 4.68E-04 |
| 21 | GO:0030187: melatonin biosynthetic process | 6.76E-04 |
| 22 | GO:0007154: cell communication | 6.76E-04 |
| 23 | GO:1900033: negative regulation of trichome patterning | 6.76E-04 |
| 24 | GO:0010155: regulation of proton transport | 6.76E-04 |
| 25 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 6.76E-04 |
| 26 | GO:0015804: neutral amino acid transport | 6.76E-04 |
| 27 | GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole | 6.76E-04 |
| 28 | GO:0010115: regulation of abscisic acid biosynthetic process | 6.76E-04 |
| 29 | GO:0034755: iron ion transmembrane transport | 6.76E-04 |
| 30 | GO:1900871: chloroplast mRNA modification | 6.76E-04 |
| 31 | GO:0009684: indoleacetic acid biosynthetic process | 7.44E-04 |
| 32 | GO:0010143: cutin biosynthetic process | 1.08E-03 |
| 33 | GO:0010207: photosystem II assembly | 1.08E-03 |
| 34 | GO:0080055: low-affinity nitrate transport | 1.10E-03 |
| 35 | GO:0045493: xylan catabolic process | 1.10E-03 |
| 36 | GO:0045165: cell fate commitment | 1.10E-03 |
| 37 | GO:0009405: pathogenesis | 1.10E-03 |
| 38 | GO:0006753: nucleoside phosphate metabolic process | 1.10E-03 |
| 39 | GO:0019853: L-ascorbic acid biosynthetic process | 1.21E-03 |
| 40 | GO:0042753: positive regulation of circadian rhythm | 1.34E-03 |
| 41 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.49E-03 |
| 42 | GO:0006168: adenine salvage | 1.57E-03 |
| 43 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.57E-03 |
| 44 | GO:0006166: purine ribonucleoside salvage | 1.57E-03 |
| 45 | GO:0006164: purine nucleotide biosynthetic process | 1.57E-03 |
| 46 | GO:0009963: positive regulation of flavonoid biosynthetic process | 1.57E-03 |
| 47 | GO:0010255: glucose mediated signaling pathway | 1.57E-03 |
| 48 | GO:0046739: transport of virus in multicellular host | 1.57E-03 |
| 49 | GO:0048629: trichome patterning | 2.11E-03 |
| 50 | GO:0009765: photosynthesis, light harvesting | 2.11E-03 |
| 51 | GO:0009649: entrainment of circadian clock | 2.11E-03 |
| 52 | GO:0008295: spermidine biosynthetic process | 2.11E-03 |
| 53 | GO:0032366: intracellular sterol transport | 2.11E-03 |
| 54 | GO:0009585: red, far-red light phototransduction | 2.49E-03 |
| 55 | GO:0046283: anthocyanin-containing compound metabolic process | 2.69E-03 |
| 56 | GO:0009904: chloroplast accumulation movement | 2.69E-03 |
| 57 | GO:0016123: xanthophyll biosynthetic process | 2.69E-03 |
| 58 | GO:0044209: AMP salvage | 2.69E-03 |
| 59 | GO:0034052: positive regulation of plant-type hypersensitive response | 2.69E-03 |
| 60 | GO:0016120: carotene biosynthetic process | 2.69E-03 |
| 61 | GO:0010154: fruit development | 2.94E-03 |
| 62 | GO:0007018: microtubule-based movement | 3.16E-03 |
| 63 | GO:0006751: glutathione catabolic process | 3.32E-03 |
| 64 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 3.32E-03 |
| 65 | GO:0000741: karyogamy | 3.32E-03 |
| 66 | GO:0046855: inositol phosphate dephosphorylation | 3.32E-03 |
| 67 | GO:0016032: viral process | 3.88E-03 |
| 68 | GO:0048280: vesicle fusion with Golgi apparatus | 4.00E-03 |
| 69 | GO:0009099: valine biosynthetic process | 4.00E-03 |
| 70 | GO:0009903: chloroplast avoidance movement | 4.00E-03 |
| 71 | GO:0030488: tRNA methylation | 4.00E-03 |
| 72 | GO:0009648: photoperiodism | 4.00E-03 |
| 73 | GO:0042372: phylloquinone biosynthetic process | 4.00E-03 |
| 74 | GO:0009082: branched-chain amino acid biosynthetic process | 4.00E-03 |
| 75 | GO:0015937: coenzyme A biosynthetic process | 4.72E-03 |
| 76 | GO:0010078: maintenance of root meristem identity | 5.48E-03 |
| 77 | GO:0032508: DNA duplex unwinding | 5.48E-03 |
| 78 | GO:2000070: regulation of response to water deprivation | 5.48E-03 |
| 79 | GO:0043068: positive regulation of programmed cell death | 5.48E-03 |
| 80 | GO:0009627: systemic acquired resistance | 5.86E-03 |
| 81 | GO:0048573: photoperiodism, flowering | 6.18E-03 |
| 82 | GO:0009097: isoleucine biosynthetic process | 6.28E-03 |
| 83 | GO:0043562: cellular response to nitrogen levels | 6.28E-03 |
| 84 | GO:0010093: specification of floral organ identity | 6.28E-03 |
| 85 | GO:0015996: chlorophyll catabolic process | 6.28E-03 |
| 86 | GO:0007186: G-protein coupled receptor signaling pathway | 6.28E-03 |
| 87 | GO:0006189: 'de novo' IMP biosynthetic process | 7.12E-03 |
| 88 | GO:0010206: photosystem II repair | 7.12E-03 |
| 89 | GO:0006811: ion transport | 7.56E-03 |
| 90 | GO:0006629: lipid metabolic process | 7.61E-03 |
| 91 | GO:0010119: regulation of stomatal movement | 7.93E-03 |
| 92 | GO:0071577: zinc II ion transmembrane transport | 8.01E-03 |
| 93 | GO:0009638: phototropism | 8.01E-03 |
| 94 | GO:0009098: leucine biosynthetic process | 8.01E-03 |
| 95 | GO:0010018: far-red light signaling pathway | 8.01E-03 |
| 96 | GO:1900865: chloroplast RNA modification | 8.01E-03 |
| 97 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 8.01E-03 |
| 98 | GO:0010380: regulation of chlorophyll biosynthetic process | 8.01E-03 |
| 99 | GO:0009641: shade avoidance | 8.92E-03 |
| 100 | GO:0010192: mucilage biosynthetic process | 8.92E-03 |
| 101 | GO:0006896: Golgi to vacuole transport | 8.92E-03 |
| 102 | GO:1903507: negative regulation of nucleic acid-templated transcription | 9.88E-03 |
| 103 | GO:0006879: cellular iron ion homeostasis | 9.88E-03 |
| 104 | GO:0006415: translational termination | 9.88E-03 |
| 105 | GO:0006631: fatty acid metabolic process | 1.03E-02 |
| 106 | GO:0006790: sulfur compound metabolic process | 1.09E-02 |
| 107 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.09E-02 |
| 108 | GO:0045037: protein import into chloroplast stroma | 1.09E-02 |
| 109 | GO:0009640: photomorphogenesis | 1.12E-02 |
| 110 | GO:0009767: photosynthetic electron transport chain | 1.19E-02 |
| 111 | GO:0010588: cotyledon vascular tissue pattern formation | 1.19E-02 |
| 112 | GO:0009785: blue light signaling pathway | 1.19E-02 |
| 113 | GO:0048467: gynoecium development | 1.30E-02 |
| 114 | GO:0009933: meristem structural organization | 1.30E-02 |
| 115 | GO:0046854: phosphatidylinositol phosphorylation | 1.40E-02 |
| 116 | GO:0042343: indole glucosinolate metabolic process | 1.40E-02 |
| 117 | GO:0009825: multidimensional cell growth | 1.40E-02 |
| 118 | GO:0006833: water transport | 1.52E-02 |
| 119 | GO:0000027: ribosomal large subunit assembly | 1.63E-02 |
| 120 | GO:0007010: cytoskeleton organization | 1.63E-02 |
| 121 | GO:0010187: negative regulation of seed germination | 1.63E-02 |
| 122 | GO:0007017: microtubule-based process | 1.75E-02 |
| 123 | GO:0003333: amino acid transmembrane transport | 1.87E-02 |
| 124 | GO:0016998: cell wall macromolecule catabolic process | 1.87E-02 |
| 125 | GO:0048511: rhythmic process | 1.87E-02 |
| 126 | GO:0098542: defense response to other organism | 1.87E-02 |
| 127 | GO:0009814: defense response, incompatible interaction | 2.00E-02 |
| 128 | GO:0035428: hexose transmembrane transport | 2.00E-02 |
| 129 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 2.00E-02 |
| 130 | GO:0006012: galactose metabolic process | 2.12E-02 |
| 131 | GO:0055114: oxidation-reduction process | 2.23E-02 |
| 132 | GO:0019722: calcium-mediated signaling | 2.25E-02 |
| 133 | GO:0009742: brassinosteroid mediated signaling pathway | 2.30E-02 |
| 134 | GO:0016117: carotenoid biosynthetic process | 2.39E-02 |
| 135 | GO:0042147: retrograde transport, endosome to Golgi | 2.39E-02 |
| 136 | GO:0000271: polysaccharide biosynthetic process | 2.52E-02 |
| 137 | GO:0080022: primary root development | 2.52E-02 |
| 138 | GO:0034220: ion transmembrane transport | 2.52E-02 |
| 139 | GO:0010087: phloem or xylem histogenesis | 2.52E-02 |
| 140 | GO:0010197: polar nucleus fusion | 2.66E-02 |
| 141 | GO:0010182: sugar mediated signaling pathway | 2.66E-02 |
| 142 | GO:0046323: glucose import | 2.66E-02 |
| 143 | GO:0009741: response to brassinosteroid | 2.66E-02 |
| 144 | GO:0045489: pectin biosynthetic process | 2.66E-02 |
| 145 | GO:0009958: positive gravitropism | 2.66E-02 |
| 146 | GO:0006520: cellular amino acid metabolic process | 2.66E-02 |
| 147 | GO:0016042: lipid catabolic process | 2.83E-02 |
| 148 | GO:0008654: phospholipid biosynthetic process | 2.95E-02 |
| 149 | GO:0009851: auxin biosynthetic process | 2.95E-02 |
| 150 | GO:0006623: protein targeting to vacuole | 2.95E-02 |
| 151 | GO:0009791: post-embryonic development | 2.95E-02 |
| 152 | GO:0010183: pollen tube guidance | 2.95E-02 |
| 153 | GO:0048825: cotyledon development | 2.95E-02 |
| 154 | GO:0006891: intra-Golgi vesicle-mediated transport | 3.09E-02 |
| 155 | GO:0010583: response to cyclopentenone | 3.24E-02 |
| 156 | GO:0030163: protein catabolic process | 3.39E-02 |
| 157 | GO:0009639: response to red or far red light | 3.55E-02 |
| 158 | GO:0006464: cellular protein modification process | 3.55E-02 |
| 159 | GO:0007267: cell-cell signaling | 3.70E-02 |
| 160 | GO:0045490: pectin catabolic process | 3.74E-02 |
| 161 | GO:0007623: circadian rhythm | 3.74E-02 |
| 162 | GO:0010027: thylakoid membrane organization | 4.02E-02 |
| 163 | GO:0016126: sterol biosynthetic process | 4.02E-02 |
| 164 | GO:0015995: chlorophyll biosynthetic process | 4.51E-02 |
| 165 | GO:0006888: ER to Golgi vesicle-mediated transport | 4.51E-02 |
| 166 | GO:0010411: xyloglucan metabolic process | 4.51E-02 |
| 167 | GO:0016311: dephosphorylation | 4.68E-02 |
| 168 | GO:0018298: protein-chromophore linkage | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 2 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 3 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 4 | GO:0036033: mediator complex binding | 0.00E+00 |
| 5 | GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity | 0.00E+00 |
| 6 | GO:0004059: aralkylamine N-acetyltransferase activity | 0.00E+00 |
| 7 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 8 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 9 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 10 | GO:0043864: indoleacetamide hydrolase activity | 0.00E+00 |
| 11 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 12 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 13 | GO:0050613: delta14-sterol reductase activity | 0.00E+00 |
| 14 | GO:0000293: ferric-chelate reductase activity | 1.41E-04 |
| 15 | GO:0003993: acid phosphatase activity | 1.70E-04 |
| 16 | GO:0019210: kinase inhibitor activity | 3.09E-04 |
| 17 | GO:0004328: formamidase activity | 3.09E-04 |
| 18 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 3.09E-04 |
| 19 | GO:0010945: CoA pyrophosphatase activity | 3.09E-04 |
| 20 | GO:0003777: microtubule motor activity | 4.64E-04 |
| 21 | GO:0016788: hydrolase activity, acting on ester bonds | 6.73E-04 |
| 22 | GO:0015172: acidic amino acid transmembrane transporter activity | 6.76E-04 |
| 23 | GO:0017118: lipoyltransferase activity | 6.76E-04 |
| 24 | GO:0003839: gamma-glutamylcyclotransferase activity | 6.76E-04 |
| 25 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 6.76E-04 |
| 26 | GO:0004766: spermidine synthase activity | 6.76E-04 |
| 27 | GO:0052832: inositol monophosphate 3-phosphatase activity | 6.76E-04 |
| 28 | GO:0008934: inositol monophosphate 1-phosphatase activity | 6.76E-04 |
| 29 | GO:0052833: inositol monophosphate 4-phosphatase activity | 6.76E-04 |
| 30 | GO:0015929: hexosaminidase activity | 6.76E-04 |
| 31 | GO:0004563: beta-N-acetylhexosaminidase activity | 6.76E-04 |
| 32 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 6.76E-04 |
| 33 | GO:0016630: protochlorophyllide reductase activity | 6.76E-04 |
| 34 | GO:0004512: inositol-3-phosphate synthase activity | 6.76E-04 |
| 35 | GO:0047372: acylglycerol lipase activity | 7.44E-04 |
| 36 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.08E-03 |
| 37 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 1.10E-03 |
| 38 | GO:0005504: fatty acid binding | 1.10E-03 |
| 39 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 1.10E-03 |
| 40 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1.57E-03 |
| 41 | GO:0052656: L-isoleucine transaminase activity | 1.57E-03 |
| 42 | GO:0009882: blue light photoreceptor activity | 1.57E-03 |
| 43 | GO:0052654: L-leucine transaminase activity | 1.57E-03 |
| 44 | GO:0052655: L-valine transaminase activity | 1.57E-03 |
| 45 | GO:0015175: neutral amino acid transmembrane transporter activity | 1.57E-03 |
| 46 | GO:0003999: adenine phosphoribosyltransferase activity | 1.57E-03 |
| 47 | GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity | 1.57E-03 |
| 48 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 1.57E-03 |
| 49 | GO:0008017: microtubule binding | 1.67E-03 |
| 50 | GO:0046556: alpha-L-arabinofuranosidase activity | 2.11E-03 |
| 51 | GO:0004084: branched-chain-amino-acid transaminase activity | 2.11E-03 |
| 52 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 2.11E-03 |
| 53 | GO:0045430: chalcone isomerase activity | 2.11E-03 |
| 54 | GO:0009044: xylan 1,4-beta-xylosidase activity | 2.11E-03 |
| 55 | GO:0030570: pectate lyase activity | 2.15E-03 |
| 56 | GO:0042802: identical protein binding | 2.25E-03 |
| 57 | GO:0016846: carbon-sulfur lyase activity | 2.69E-03 |
| 58 | GO:0004040: amidase activity | 2.69E-03 |
| 59 | GO:0016491: oxidoreductase activity | 3.22E-03 |
| 60 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 3.32E-03 |
| 61 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 3.32E-03 |
| 62 | GO:0000210: NAD+ diphosphatase activity | 3.32E-03 |
| 63 | GO:0042578: phosphoric ester hydrolase activity | 3.32E-03 |
| 64 | GO:0016208: AMP binding | 3.32E-03 |
| 65 | GO:0003730: mRNA 3'-UTR binding | 4.00E-03 |
| 66 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 4.00E-03 |
| 67 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 4.00E-03 |
| 68 | GO:0009927: histidine phosphotransfer kinase activity | 4.00E-03 |
| 69 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 5.38E-03 |
| 70 | GO:0043022: ribosome binding | 5.48E-03 |
| 71 | GO:0004033: aldo-keto reductase (NADP) activity | 5.48E-03 |
| 72 | GO:0030247: polysaccharide binding | 6.18E-03 |
| 73 | GO:0008173: RNA methyltransferase activity | 6.28E-03 |
| 74 | GO:0003747: translation release factor activity | 7.12E-03 |
| 75 | GO:0005381: iron ion transmembrane transporter activity | 8.01E-03 |
| 76 | GO:0031072: heat shock protein binding | 1.19E-02 |
| 77 | GO:0000155: phosphorelay sensor kinase activity | 1.19E-02 |
| 78 | GO:0008081: phosphoric diester hydrolase activity | 1.19E-02 |
| 79 | GO:0008146: sulfotransferase activity | 1.40E-02 |
| 80 | GO:0005385: zinc ion transmembrane transporter activity | 1.63E-02 |
| 81 | GO:0005528: FK506 binding | 1.63E-02 |
| 82 | GO:0003714: transcription corepressor activity | 1.63E-02 |
| 83 | GO:0051087: chaperone binding | 1.75E-02 |
| 84 | GO:0008324: cation transmembrane transporter activity | 1.75E-02 |
| 85 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 2.00E-02 |
| 86 | GO:0052689: carboxylic ester hydrolase activity | 2.04E-02 |
| 87 | GO:0008080: N-acetyltransferase activity | 2.66E-02 |
| 88 | GO:0001085: RNA polymerase II transcription factor binding | 2.66E-02 |
| 89 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.73E-02 |
| 90 | GO:0005355: glucose transmembrane transporter activity | 2.80E-02 |
| 91 | GO:0010181: FMN binding | 2.80E-02 |
| 92 | GO:0016829: lyase activity | 2.93E-02 |
| 93 | GO:0019825: oxygen binding | 3.05E-02 |
| 94 | GO:0048038: quinone binding | 3.09E-02 |
| 95 | GO:0004672: protein kinase activity | 3.34E-02 |
| 96 | GO:0016791: phosphatase activity | 3.55E-02 |
| 97 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 3.70E-02 |
| 98 | GO:0020037: heme binding | 3.76E-02 |
| 99 | GO:0046872: metal ion binding | 3.90E-02 |
| 100 | GO:0015250: water channel activity | 4.02E-02 |
| 101 | GO:0004721: phosphoprotein phosphatase activity | 4.51E-02 |
| 102 | GO:0008236: serine-type peptidase activity | 4.68E-02 |
| 103 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 4.68E-02 |
| 104 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 4.68E-02 |
| 105 | GO:0005506: iron ion binding | 4.95E-02 |