Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G57180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0015843: methylammonium transport0.00E+00
4GO:0097275: cellular ammonia homeostasis0.00E+00
5GO:0043488: regulation of mRNA stability0.00E+00
6GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
7GO:0017038: protein import0.00E+00
8GO:0046460: neutral lipid biosynthetic process0.00E+00
9GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
10GO:0031054: pre-miRNA processing0.00E+00
11GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
12GO:0031116: positive regulation of microtubule polymerization0.00E+00
13GO:0051924: regulation of calcium ion transport0.00E+00
14GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
15GO:0042817: pyridoxal metabolic process0.00E+00
16GO:0042407: cristae formation0.00E+00
17GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
18GO:0015882: L-ascorbic acid transport0.00E+00
19GO:0018023: peptidyl-lysine trimethylation0.00E+00
20GO:2001294: malonyl-CoA catabolic process0.00E+00
21GO:0009658: chloroplast organization1.01E-06
22GO:1900865: chloroplast RNA modification1.21E-04
23GO:0040008: regulation of growth4.48E-04
24GO:0009733: response to auxin5.21E-04
25GO:0042372: phylloquinone biosynthetic process5.75E-04
26GO:1902458: positive regulation of stomatal opening6.37E-04
27GO:0010028: xanthophyll cycle6.37E-04
28GO:0006419: alanyl-tRNA aminoacylation6.37E-04
29GO:0051171: regulation of nitrogen compound metabolic process6.37E-04
30GO:0071028: nuclear mRNA surveillance6.37E-04
31GO:0043266: regulation of potassium ion transport6.37E-04
32GO:0006659: phosphatidylserine biosynthetic process6.37E-04
33GO:0042371: vitamin K biosynthetic process6.37E-04
34GO:0043087: regulation of GTPase activity6.37E-04
35GO:2000021: regulation of ion homeostasis6.37E-04
36GO:0006400: tRNA modification7.35E-04
37GO:0032544: plastid translation1.11E-03
38GO:0000373: Group II intron splicing1.33E-03
39GO:0042550: photosystem I stabilization1.37E-03
40GO:0031125: rRNA 3'-end processing1.37E-03
41GO:1903426: regulation of reactive oxygen species biosynthetic process1.37E-03
42GO:0006568: tryptophan metabolic process1.37E-03
43GO:0015804: neutral amino acid transport1.37E-03
44GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.37E-03
45GO:0006739: NADP metabolic process1.37E-03
46GO:0034475: U4 snRNA 3'-end processing1.37E-03
47GO:1900871: chloroplast mRNA modification1.37E-03
48GO:0007154: cell communication1.37E-03
49GO:0018026: peptidyl-lysine monomethylation1.37E-03
50GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation1.37E-03
51GO:0000256: allantoin catabolic process1.37E-03
52GO:1900033: negative regulation of trichome patterning1.37E-03
53GO:0042325: regulation of phosphorylation1.37E-03
54GO:0006423: cysteinyl-tRNA aminoacylation1.37E-03
55GO:0031648: protein destabilization1.37E-03
56GO:0009684: indoleacetic acid biosynthetic process2.13E-03
57GO:0006415: translational termination2.13E-03
58GO:0016075: rRNA catabolic process2.26E-03
59GO:0033591: response to L-ascorbic acid2.26E-03
60GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'2.26E-03
61GO:0051127: positive regulation of actin nucleation2.26E-03
62GO:0010136: ureide catabolic process2.26E-03
63GO:0010589: leaf proximal/distal pattern formation2.26E-03
64GO:0019419: sulfate reduction2.26E-03
65GO:0080055: low-affinity nitrate transport2.26E-03
66GO:0051604: protein maturation2.26E-03
67GO:0006753: nucleoside phosphate metabolic process2.26E-03
68GO:0001578: microtubule bundle formation2.26E-03
69GO:0045493: xylan catabolic process2.26E-03
70GO:0045037: protein import into chloroplast stroma2.44E-03
71GO:0015995: chlorophyll biosynthetic process3.19E-03
72GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.28E-03
73GO:0006166: purine ribonucleoside salvage3.28E-03
74GO:0009102: biotin biosynthetic process3.28E-03
75GO:0051639: actin filament network formation3.28E-03
76GO:0009647: skotomorphogenesis3.28E-03
77GO:0008615: pyridoxine biosynthetic process3.28E-03
78GO:0010255: glucose mediated signaling pathway3.28E-03
79GO:0015696: ammonium transport3.28E-03
80GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.28E-03
81GO:0006145: purine nucleobase catabolic process3.28E-03
82GO:0006168: adenine salvage3.28E-03
83GO:0006164: purine nucleotide biosynthetic process3.28E-03
84GO:2001141: regulation of RNA biosynthetic process3.28E-03
85GO:0005992: trehalose biosynthetic process4.36E-03
86GO:0019344: cysteine biosynthetic process4.36E-03
87GO:0048629: trichome patterning4.43E-03
88GO:0010109: regulation of photosynthesis4.43E-03
89GO:0051764: actin crosslink formation4.43E-03
90GO:0051322: anaphase4.43E-03
91GO:0035279: mRNA cleavage involved in gene silencing by miRNA4.43E-03
92GO:0072488: ammonium transmembrane transport4.43E-03
93GO:0006021: inositol biosynthetic process4.43E-03
94GO:0006734: NADH metabolic process4.43E-03
95GO:0007020: microtubule nucleation4.43E-03
96GO:0044209: AMP salvage5.69E-03
97GO:0046785: microtubule polymerization5.69E-03
98GO:0010236: plastoquinone biosynthetic process5.69E-03
99GO:0045038: protein import into chloroplast thylakoid membrane5.69E-03
100GO:2000022: regulation of jasmonic acid mediated signaling pathway5.81E-03
101GO:0010264: myo-inositol hexakisphosphate biosynthetic process7.06E-03
102GO:0010190: cytochrome b6f complex assembly7.06E-03
103GO:0016554: cytidine to uridine editing7.06E-03
104GO:0009920: cell plate formation involved in plant-type cell wall biogenesis7.06E-03
105GO:0032973: amino acid export7.06E-03
106GO:0009789: positive regulation of abscisic acid-activated signaling pathway7.49E-03
107GO:0009734: auxin-activated signaling pathway7.76E-03
108GO:0080086: stamen filament development8.54E-03
109GO:0006458: 'de novo' protein folding8.54E-03
110GO:0048280: vesicle fusion with Golgi apparatus8.54E-03
111GO:0042026: protein refolding8.54E-03
112GO:0034389: lipid particle organization8.54E-03
113GO:0009585: red, far-red light phototransduction1.00E-02
114GO:0035196: production of miRNAs involved in gene silencing by miRNA1.01E-02
115GO:0048528: post-embryonic root development1.01E-02
116GO:0009772: photosynthetic electron transport in photosystem II1.01E-02
117GO:0043090: amino acid import1.01E-02
118GO:0015937: coenzyme A biosynthetic process1.01E-02
119GO:0010196: nonphotochemical quenching1.01E-02
120GO:0009793: embryo development ending in seed dormancy1.01E-02
121GO:0015693: magnesium ion transport1.01E-02
122GO:0000105: histidine biosynthetic process1.18E-02
123GO:0006402: mRNA catabolic process1.18E-02
124GO:0006605: protein targeting1.18E-02
125GO:0019375: galactolipid biosynthetic process1.18E-02
126GO:0010078: maintenance of root meristem identity1.18E-02
127GO:0009704: de-etiolation1.18E-02
128GO:0042255: ribosome assembly1.18E-02
129GO:0046620: regulation of organ growth1.18E-02
130GO:0006353: DNA-templated transcription, termination1.18E-02
131GO:2000070: regulation of response to water deprivation1.18E-02
132GO:0070413: trehalose metabolism in response to stress1.18E-02
133GO:1901657: glycosyl compound metabolic process1.24E-02
134GO:0043562: cellular response to nitrogen levels1.36E-02
135GO:0006002: fructose 6-phosphate metabolic process1.36E-02
136GO:0071482: cellular response to light stimulus1.36E-02
137GO:0006526: arginine biosynthetic process1.36E-02
138GO:0015780: nucleotide-sugar transport1.54E-02
139GO:0098656: anion transmembrane transport1.54E-02
140GO:0051865: protein autoubiquitination1.54E-02
141GO:0010206: photosystem II repair1.54E-02
142GO:0080144: amino acid homeostasis1.54E-02
143GO:0019432: triglyceride biosynthetic process1.54E-02
144GO:0006783: heme biosynthetic process1.54E-02
145GO:0006189: 'de novo' IMP biosynthetic process1.54E-02
146GO:0016126: sterol biosynthetic process1.58E-02
147GO:0010027: thylakoid membrane organization1.58E-02
148GO:0010267: production of ta-siRNAs involved in RNA interference1.74E-02
149GO:0042761: very long-chain fatty acid biosynthetic process1.74E-02
150GO:0009638: phototropism1.74E-02
151GO:0043067: regulation of programmed cell death1.74E-02
152GO:0010018: far-red light signaling pathway1.74E-02
153GO:0010380: regulation of chlorophyll biosynthetic process1.74E-02
154GO:0009627: systemic acquired resistance1.76E-02
155GO:0045036: protein targeting to chloroplast1.94E-02
156GO:0006949: syncytium formation1.94E-02
157GO:0009299: mRNA transcription1.94E-02
158GO:0006535: cysteine biosynthetic process from serine1.94E-02
159GO:0006896: Golgi to vacuole transport1.94E-02
160GO:0000103: sulfate assimilation1.94E-02
161GO:0006782: protoporphyrinogen IX biosynthetic process1.94E-02
162GO:0010015: root morphogenesis2.15E-02
163GO:0009773: photosynthetic electron transport in photosystem I2.15E-02
164GO:1903507: negative regulation of nucleic acid-templated transcription2.15E-02
165GO:0006352: DNA-templated transcription, initiation2.15E-02
166GO:0030036: actin cytoskeleton organization2.60E-02
167GO:0009725: response to hormone2.60E-02
168GO:0010588: cotyledon vascular tissue pattern formation2.60E-02
169GO:2000012: regulation of auxin polar transport2.60E-02
170GO:0010628: positive regulation of gene expression2.60E-02
171GO:0045087: innate immune response2.62E-02
172GO:0010207: photosystem II assembly2.83E-02
173GO:0048467: gynoecium development2.83E-02
174GO:0006413: translational initiation2.87E-02
175GO:0019853: L-ascorbic acid biosynthetic process3.07E-02
176GO:0090351: seedling development3.07E-02
177GO:0010030: positive regulation of seed germination3.07E-02
178GO:0006631: fatty acid metabolic process3.11E-02
179GO:0007623: circadian rhythm3.14E-02
180GO:0009833: plant-type primary cell wall biogenesis3.32E-02
181GO:0006071: glycerol metabolic process3.32E-02
182GO:0000162: tryptophan biosynthetic process3.32E-02
183GO:0010025: wax biosynthetic process3.32E-02
184GO:0042753: positive regulation of circadian rhythm3.32E-02
185GO:0009416: response to light stimulus3.38E-02
186GO:0080147: root hair cell development3.57E-02
187GO:0030150: protein import into mitochondrial matrix3.57E-02
188GO:0051017: actin filament bundle assembly3.57E-02
189GO:0007010: cytoskeleton organization3.57E-02
190GO:0010187: negative regulation of seed germination3.57E-02
191GO:0007166: cell surface receptor signaling pathway3.70E-02
192GO:0043622: cortical microtubule organization3.83E-02
193GO:0008380: RNA splicing3.90E-02
194GO:0048511: rhythmic process4.10E-02
195GO:0031408: oxylipin biosynthetic process4.10E-02
196GO:0061077: chaperone-mediated protein folding4.10E-02
197GO:0003333: amino acid transmembrane transport4.10E-02
198GO:0006397: mRNA processing4.15E-02
199GO:0006730: one-carbon metabolic process4.37E-02
200GO:0007005: mitochondrion organization4.37E-02
201GO:0031348: negative regulation of defense response4.37E-02
202GO:0006508: proteolysis4.38E-02
203GO:0005975: carbohydrate metabolic process4.39E-02
204GO:0071555: cell wall organization4.56E-02
205GO:0006012: galactose metabolic process4.65E-02
206GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.65E-02
207GO:0009686: gibberellin biosynthetic process4.65E-02
208GO:0010214: seed coat development4.93E-02
209GO:0009306: protein secretion4.93E-02
RankGO TermAdjusted P value
1GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
2GO:0004358: glutamate N-acetyltransferase activity0.00E+00
3GO:0036033: mediator complex binding0.00E+00
4GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
5GO:0004076: biotin synthase activity0.00E+00
6GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
7GO:0043864: indoleacetamide hydrolase activity0.00E+00
8GO:0010349: L-galactose dehydrogenase activity0.00E+00
9GO:0050613: delta14-sterol reductase activity0.00E+00
10GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
11GO:0015229: L-ascorbic acid transporter activity0.00E+00
12GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
13GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
14GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
15GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
16GO:0004056: argininosuccinate lyase activity0.00E+00
17GO:0016851: magnesium chelatase activity1.21E-04
18GO:0050139: nicotinate-N-glucosyltransferase activity6.37E-04
19GO:0046480: galactolipid galactosyltransferase activity6.37E-04
20GO:0010945: CoA pyrophosphatase activity6.37E-04
21GO:0051777: ent-kaurenoate oxidase activity6.37E-04
22GO:0005227: calcium activated cation channel activity6.37E-04
23GO:0004425: indole-3-glycerol-phosphate synthase activity6.37E-04
24GO:0004733: pyridoxamine-phosphate oxidase activity6.37E-04
25GO:0004813: alanine-tRNA ligase activity6.37E-04
26GO:0046481: digalactosyldiacylglycerol synthase activity6.37E-04
27GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.37E-04
28GO:0004853: uroporphyrinogen decarboxylase activity6.37E-04
29GO:0052857: NADPHX epimerase activity6.37E-04
30GO:0052856: NADHX epimerase activity6.37E-04
31GO:0003747: translation release factor activity1.33E-03
32GO:0043425: bHLH transcription factor binding1.37E-03
33GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.37E-03
34GO:0009977: proton motive force dependent protein transmembrane transporter activity1.37E-03
35GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.37E-03
36GO:0009973: adenylyl-sulfate reductase activity1.37E-03
37GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.37E-03
38GO:0004817: cysteine-tRNA ligase activity1.37E-03
39GO:0016630: protochlorophyllide reductase activity1.37E-03
40GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.37E-03
41GO:0004512: inositol-3-phosphate synthase activity1.37E-03
42GO:0015172: acidic amino acid transmembrane transporter activity1.37E-03
43GO:0050017: L-3-cyanoalanine synthase activity1.37E-03
44GO:0017118: lipoyltransferase activity1.37E-03
45GO:0004805: trehalose-phosphatase activity1.84E-03
46GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity2.26E-03
47GO:0052692: raffinose alpha-galactosidase activity2.26E-03
48GO:0080054: low-affinity nitrate transmembrane transporter activity2.26E-03
49GO:0015462: ATPase-coupled protein transmembrane transporter activity2.26E-03
50GO:0046524: sucrose-phosphate synthase activity2.26E-03
51GO:0070330: aromatase activity2.26E-03
52GO:0003913: DNA photolyase activity2.26E-03
53GO:0004848: ureidoglycolate hydrolase activity2.26E-03
54GO:0004148: dihydrolipoyl dehydrogenase activity2.26E-03
55GO:0004557: alpha-galactosidase activity2.26E-03
56GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.14E-03
57GO:0035198: miRNA binding3.28E-03
58GO:0000254: C-4 methylsterol oxidase activity3.28E-03
59GO:0035250: UDP-galactosyltransferase activity3.28E-03
60GO:0003999: adenine phosphoribosyltransferase activity3.28E-03
61GO:0019201: nucleotide kinase activity3.28E-03
62GO:0015175: neutral amino acid transmembrane transporter activity3.28E-03
63GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity3.28E-03
64GO:0016149: translation release factor activity, codon specific3.28E-03
65GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor3.28E-03
66GO:0005528: FK506 binding4.36E-03
67GO:0004659: prenyltransferase activity4.43E-03
68GO:0016279: protein-lysine N-methyltransferase activity4.43E-03
69GO:0001053: plastid sigma factor activity4.43E-03
70GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.43E-03
71GO:0004045: aminoacyl-tRNA hydrolase activity4.43E-03
72GO:0009044: xylan 1,4-beta-xylosidase activity4.43E-03
73GO:0016987: sigma factor activity4.43E-03
74GO:0046556: alpha-L-arabinofuranosidase activity4.43E-03
75GO:0010294: abscisic acid glucosyltransferase activity5.69E-03
76GO:0016846: carbon-sulfur lyase activity5.69E-03
77GO:0018685: alkane 1-monooxygenase activity5.69E-03
78GO:0004040: amidase activity5.69E-03
79GO:0030570: pectate lyase activity6.35E-03
80GO:0008519: ammonium transmembrane transporter activity7.06E-03
81GO:0000210: NAD+ diphosphatase activity7.06E-03
82GO:0016208: AMP binding7.06E-03
83GO:0042578: phosphoric ester hydrolase activity7.06E-03
84GO:0004124: cysteine synthase activity8.54E-03
85GO:0008195: phosphatidate phosphatase activity8.54E-03
86GO:0004017: adenylate kinase activity8.54E-03
87GO:0003730: mRNA 3'-UTR binding8.54E-03
88GO:0016832: aldehyde-lyase activity8.54E-03
89GO:0004144: diacylglycerol O-acyltransferase activity8.54E-03
90GO:0004723: calcium-dependent protein serine/threonine phosphatase activity8.54E-03
91GO:0009927: histidine phosphotransfer kinase activity8.54E-03
92GO:0008017: microtubule binding8.82E-03
93GO:0010181: FMN binding9.42E-03
94GO:0005338: nucleotide-sugar transmembrane transporter activity1.01E-02
95GO:0009881: photoreceptor activity1.01E-02
96GO:0003872: 6-phosphofructokinase activity1.01E-02
97GO:0043022: ribosome binding1.18E-02
98GO:0004033: aldo-keto reductase (NADP) activity1.18E-02
99GO:0005525: GTP binding1.22E-02
100GO:0008237: metallopeptidase activity1.40E-02
101GO:0102483: scopolin beta-glucosidase activity1.86E-02
102GO:0004713: protein tyrosine kinase activity1.94E-02
103GO:0008236: serine-type peptidase activity1.96E-02
104GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.06E-02
105GO:0008559: xenobiotic-transporting ATPase activity2.15E-02
106GO:0044183: protein binding involved in protein folding2.15E-02
107GO:0047372: acylglycerol lipase activity2.15E-02
108GO:0016829: lyase activity2.31E-02
109GO:0000049: tRNA binding2.37E-02
110GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.39E-02
111GO:0052689: carboxylic ester hydrolase activity2.56E-02
112GO:0004089: carbonate dehydratase activity2.60E-02
113GO:0015095: magnesium ion transmembrane transporter activity2.60E-02
114GO:0019888: protein phosphatase regulator activity2.60E-02
115GO:0009982: pseudouridine synthase activity2.60E-02
116GO:0003725: double-stranded RNA binding2.60E-02
117GO:0000175: 3'-5'-exoribonuclease activity2.60E-02
118GO:0015266: protein channel activity2.60E-02
119GO:0005315: inorganic phosphate transmembrane transporter activity2.60E-02
120GO:0008565: protein transporter activity2.62E-02
121GO:0003746: translation elongation factor activity2.62E-02
122GO:0003993: acid phosphatase activity2.74E-02
123GO:0008266: poly(U) RNA binding2.83E-02
124GO:0008422: beta-glucosidase activity2.86E-02
125GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.87E-02
126GO:0051539: 4 iron, 4 sulfur cluster binding2.98E-02
127GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.32E-02
128GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.32E-02
129GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.32E-02
130GO:0003723: RNA binding3.51E-02
131GO:0003714: transcription corepressor activity3.57E-02
132GO:0003743: translation initiation factor activity3.80E-02
133GO:0051087: chaperone binding3.83E-02
134GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.93E-02
135GO:0019706: protein-cysteine S-palmitoyltransferase activity4.10E-02
136GO:0008408: 3'-5' exonuclease activity4.10E-02
137GO:0004176: ATP-dependent peptidase activity4.10E-02
138GO:0003964: RNA-directed DNA polymerase activity4.10E-02
139GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.37E-02
140GO:0005506: iron ion binding4.43E-02
141GO:0016760: cellulose synthase (UDP-forming) activity4.65E-02
142GO:0016740: transferase activity4.68E-02
143GO:0008514: organic anion transmembrane transporter activity4.93E-02
144GO:0003727: single-stranded RNA binding4.93E-02
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Gene type



Gene DE type