Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G55220

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
2GO:0071474: cellular hyperosmotic response0.00E+00
3GO:0015882: L-ascorbic acid transport0.00E+00
4GO:0018023: peptidyl-lysine trimethylation0.00E+00
5GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
6GO:0070125: mitochondrial translational elongation0.00E+00
7GO:0034337: RNA folding0.00E+00
8GO:0002184: cytoplasmic translational termination0.00E+00
9GO:0006223: uracil salvage0.00E+00
10GO:0017038: protein import0.00E+00
11GO:0016553: base conversion or substitution editing0.00E+00
12GO:0090279: regulation of calcium ion import0.00E+00
13GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
14GO:0042820: vitamin B6 catabolic process0.00E+00
15GO:0090470: shoot organ boundary specification0.00E+00
16GO:0042821: pyridoxal biosynthetic process0.00E+00
17GO:0015995: chlorophyll biosynthetic process1.66E-12
18GO:0010207: photosystem II assembly2.15E-07
19GO:0048564: photosystem I assembly4.31E-07
20GO:0015979: photosynthesis7.71E-07
21GO:0010021: amylopectin biosynthetic process1.56E-06
22GO:0009735: response to cytokinin2.89E-06
23GO:0055114: oxidation-reduction process5.14E-06
24GO:0010027: thylakoid membrane organization1.75E-05
25GO:0006783: heme biosynthetic process5.02E-05
26GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.62E-05
27GO:0006782: protoporphyrinogen IX biosynthetic process8.48E-05
28GO:0019252: starch biosynthetic process9.54E-05
29GO:0009089: lysine biosynthetic process via diaminopimelate1.06E-04
30GO:0045038: protein import into chloroplast thylakoid membrane2.04E-04
31GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.88E-04
32GO:1901259: chloroplast rRNA processing3.85E-04
33GO:0000481: maturation of 5S rRNA4.87E-04
34GO:0043953: protein transport by the Tat complex4.87E-04
35GO:1904964: positive regulation of phytol biosynthetic process4.87E-04
36GO:0065002: intracellular protein transmembrane transport4.87E-04
37GO:0043686: co-translational protein modification4.87E-04
38GO:1902458: positive regulation of stomatal opening4.87E-04
39GO:0010028: xanthophyll cycle4.87E-04
40GO:0048363: mucilage pectin metabolic process4.87E-04
41GO:0009443: pyridoxal 5'-phosphate salvage4.87E-04
42GO:0009090: homoserine biosynthetic process4.87E-04
43GO:1902478: negative regulation of defense response to bacterium, incompatible interaction4.87E-04
44GO:0043489: RNA stabilization4.87E-04
45GO:0015671: oxygen transport4.87E-04
46GO:1904966: positive regulation of vitamin E biosynthetic process4.87E-04
47GO:0009658: chloroplast organization5.23E-04
48GO:0071482: cellular response to light stimulus7.51E-04
49GO:0010206: photosystem II repair8.99E-04
50GO:0071668: plant-type cell wall assembly1.05E-03
51GO:0006435: threonyl-tRNA aminoacylation1.05E-03
52GO:0080183: response to photooxidative stress1.05E-03
53GO:0006729: tetrahydrobiopterin biosynthetic process1.05E-03
54GO:1903426: regulation of reactive oxygen species biosynthetic process1.05E-03
55GO:0030388: fructose 1,6-bisphosphate metabolic process1.05E-03
56GO:0051262: protein tetramerization1.05E-03
57GO:0010275: NAD(P)H dehydrogenase complex assembly1.05E-03
58GO:1900871: chloroplast mRNA modification1.05E-03
59GO:0006432: phenylalanyl-tRNA aminoacylation1.05E-03
60GO:1902326: positive regulation of chlorophyll biosynthetic process1.05E-03
61GO:0018026: peptidyl-lysine monomethylation1.05E-03
62GO:0000256: allantoin catabolic process1.05E-03
63GO:0006779: porphyrin-containing compound biosynthetic process1.06E-03
64GO:0006412: translation1.23E-03
65GO:0006352: DNA-templated transcription, initiation1.42E-03
66GO:0051604: protein maturation1.71E-03
67GO:0015940: pantothenate biosynthetic process1.71E-03
68GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.71E-03
69GO:0005977: glycogen metabolic process1.71E-03
70GO:0010136: ureide catabolic process1.71E-03
71GO:0034051: negative regulation of plant-type hypersensitive response1.71E-03
72GO:0006000: fructose metabolic process1.71E-03
73GO:0006094: gluconeogenesis1.85E-03
74GO:0009817: defense response to fungus, incompatible interaction2.16E-03
75GO:2001141: regulation of RNA biosynthetic process2.48E-03
76GO:0009067: aspartate family amino acid biosynthetic process2.48E-03
77GO:0010371: regulation of gibberellin biosynthetic process2.48E-03
78GO:0006020: inositol metabolic process2.48E-03
79GO:0009102: biotin biosynthetic process2.48E-03
80GO:0009152: purine ribonucleotide biosynthetic process2.48E-03
81GO:0010601: positive regulation of auxin biosynthetic process2.48E-03
82GO:0046653: tetrahydrofolate metabolic process2.48E-03
83GO:0009052: pentose-phosphate shunt, non-oxidative branch2.48E-03
84GO:0033014: tetrapyrrole biosynthetic process2.48E-03
85GO:0010731: protein glutathionylation2.48E-03
86GO:0006424: glutamyl-tRNA aminoacylation2.48E-03
87GO:1901332: negative regulation of lateral root development2.48E-03
88GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.48E-03
89GO:0006145: purine nucleobase catabolic process2.48E-03
90GO:0044206: UMP salvage3.34E-03
91GO:0010109: regulation of photosynthesis3.34E-03
92GO:0009765: photosynthesis, light harvesting3.34E-03
93GO:0006536: glutamate metabolic process3.34E-03
94GO:0006021: inositol biosynthetic process3.34E-03
95GO:0071483: cellular response to blue light3.34E-03
96GO:0048511: rhythmic process3.52E-03
97GO:0006631: fatty acid metabolic process3.64E-03
98GO:0019748: secondary metabolic process3.86E-03
99GO:0016120: carotene biosynthetic process4.28E-03
100GO:0031365: N-terminal protein amino acid modification4.28E-03
101GO:0043097: pyrimidine nucleoside salvage4.28E-03
102GO:0016123: xanthophyll biosynthetic process4.28E-03
103GO:0000304: response to singlet oxygen4.28E-03
104GO:0080110: sporopollenin biosynthetic process4.28E-03
105GO:0032543: mitochondrial translation4.28E-03
106GO:0006564: L-serine biosynthetic process4.28E-03
107GO:0016117: carotenoid biosynthetic process4.96E-03
108GO:0006206: pyrimidine nucleobase metabolic process5.30E-03
109GO:0046855: inositol phosphate dephosphorylation5.30E-03
110GO:0010304: PSII associated light-harvesting complex II catabolic process5.30E-03
111GO:0042549: photosystem II stabilization5.30E-03
112GO:0000470: maturation of LSU-rRNA5.30E-03
113GO:0006655: phosphatidylglycerol biosynthetic process5.30E-03
114GO:0010190: cytochrome b6f complex assembly5.30E-03
115GO:0009854: oxidative photosynthetic carbon pathway6.40E-03
116GO:0009088: threonine biosynthetic process6.40E-03
117GO:0005975: carbohydrate metabolic process7.43E-03
118GO:0048437: floral organ development7.57E-03
119GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.57E-03
120GO:0032508: DNA duplex unwinding8.81E-03
121GO:2000070: regulation of response to water deprivation8.81E-03
122GO:0016559: peroxisome fission8.81E-03
123GO:0005978: glycogen biosynthetic process8.81E-03
124GO:0006605: protein targeting8.81E-03
125GO:0032544: plastid translation1.01E-02
126GO:0017004: cytochrome complex assembly1.01E-02
127GO:0006002: fructose 6-phosphate metabolic process1.01E-02
128GO:0022900: electron transport chain1.01E-02
129GO:0015996: chlorophyll catabolic process1.01E-02
130GO:0007186: G-protein coupled receptor signaling pathway1.01E-02
131GO:0019432: triglyceride biosynthetic process1.15E-02
132GO:0098656: anion transmembrane transport1.15E-02
133GO:0031425: chloroplast RNA processing1.29E-02
134GO:0005982: starch metabolic process1.29E-02
135GO:0010205: photoinhibition1.29E-02
136GO:0009086: methionine biosynthetic process1.29E-02
137GO:0048354: mucilage biosynthetic process involved in seed coat development1.29E-02
138GO:0018298: protein-chromophore linkage1.36E-02
139GO:0006535: cysteine biosynthetic process from serine1.45E-02
140GO:0007568: aging1.58E-02
141GO:0008285: negative regulation of cell proliferation1.60E-02
142GO:0019684: photosynthesis, light reaction1.60E-02
143GO:0072593: reactive oxygen species metabolic process1.60E-02
144GO:0009773: photosynthetic electron transport in photosystem I1.60E-02
145GO:0006633: fatty acid biosynthetic process1.66E-02
146GO:0009853: photorespiration1.73E-02
147GO:0045087: innate immune response1.73E-02
148GO:0016051: carbohydrate biosynthetic process1.73E-02
149GO:0016024: CDP-diacylglycerol biosynthetic process1.76E-02
150GO:0045037: protein import into chloroplast stroma1.76E-02
151GO:0006790: sulfur compound metabolic process1.76E-02
152GO:0005983: starch catabolic process1.76E-02
153GO:0006810: transport1.77E-02
154GO:0009451: RNA modification1.92E-02
155GO:0006807: nitrogen compound metabolic process1.93E-02
156GO:0009725: response to hormone1.93E-02
157GO:0009767: photosynthetic electron transport chain1.93E-02
158GO:0005986: sucrose biosynthetic process1.93E-02
159GO:0010020: chloroplast fission2.11E-02
160GO:0019253: reductive pentose-phosphate cycle2.11E-02
161GO:0009266: response to temperature stimulus2.11E-02
162GO:0006397: mRNA processing2.27E-02
163GO:0090351: seedling development2.28E-02
164GO:0046854: phosphatidylinositol phosphorylation2.28E-02
165GO:0019762: glucosinolate catabolic process2.47E-02
166GO:0006636: unsaturated fatty acid biosynthetic process2.47E-02
167GO:0009636: response to toxic substance2.51E-02
168GO:0006289: nucleotide-excision repair2.66E-02
169GO:0019344: cysteine biosynthetic process2.66E-02
170GO:0009116: nucleoside metabolic process2.66E-02
171GO:0007017: microtubule-based process2.85E-02
172GO:0010073: meristem maintenance2.85E-02
173GO:0008299: isoprenoid biosynthetic process2.85E-02
174GO:0010431: seed maturation3.05E-02
175GO:0061077: chaperone-mediated protein folding3.05E-02
176GO:0031408: oxylipin biosynthetic process3.05E-02
177GO:0016114: terpenoid biosynthetic process3.05E-02
178GO:0035428: hexose transmembrane transport3.25E-02
179GO:0080092: regulation of pollen tube growth3.25E-02
180GO:0016226: iron-sulfur cluster assembly3.25E-02
181GO:0042254: ribosome biogenesis3.31E-02
182GO:0009625: response to insect3.46E-02
183GO:0010227: floral organ abscission3.46E-02
184GO:0006012: galactose metabolic process3.46E-02
185GO:0006096: glycolytic process3.56E-02
186GO:0006508: proteolysis3.65E-02
187GO:0010584: pollen exine formation3.67E-02
188GO:0042335: cuticle development4.11E-02
189GO:0000271: polysaccharide biosynthetic process4.11E-02
190GO:0010182: sugar mediated signaling pathway4.33E-02
191GO:0046323: glucose import4.33E-02
192GO:0009741: response to brassinosteroid4.33E-02
193GO:0045489: pectin biosynthetic process4.33E-02
194GO:0009793: embryo development ending in seed dormancy4.45E-02
195GO:0042752: regulation of circadian rhythm4.56E-02
196GO:0009646: response to absence of light4.56E-02
197GO:0009556: microsporogenesis4.80E-02
198GO:0009791: post-embryonic development4.80E-02
RankGO TermAdjusted P value
1GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
2GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
3GO:0045435: lycopene epsilon cyclase activity0.00E+00
4GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
5GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
6GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
7GO:0046408: chlorophyll synthetase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity0.00E+00
10GO:0005048: signal sequence binding0.00E+00
11GO:0004076: biotin synthase activity0.00E+00
12GO:0019144: ADP-sugar diphosphatase activity0.00E+00
13GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
14GO:0008887: glycerate kinase activity0.00E+00
15GO:0050613: delta14-sterol reductase activity0.00E+00
16GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
17GO:0016631: enoyl-[acyl-carrier-protein] reductase activity0.00E+00
18GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
19GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
20GO:0015229: L-ascorbic acid transporter activity0.00E+00
21GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
22GO:0070402: NADPH binding1.13E-07
23GO:0016851: magnesium chelatase activity5.43E-07
24GO:0019843: rRNA binding9.32E-07
25GO:0008266: poly(U) RNA binding8.76E-06
26GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.04E-05
27GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.04E-05
28GO:0005528: FK506 binding1.80E-05
29GO:0030267: glyoxylate reductase (NADP) activity3.55E-05
30GO:0003746: translation elongation factor activity5.76E-05
31GO:0016491: oxidoreductase activity6.38E-05
32GO:0001053: plastid sigma factor activity1.32E-04
33GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.32E-04
34GO:0016987: sigma factor activity1.32E-04
35GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.40E-04
36GO:0031072: heat shock protein binding1.59E-04
37GO:0003959: NADPH dehydrogenase activity2.04E-04
38GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.85E-04
39GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.87E-04
40GO:0004325: ferrochelatase activity4.87E-04
41GO:0042586: peptide deformylase activity4.87E-04
42GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.87E-04
43GO:0016784: 3-mercaptopyruvate sulfurtransferase activity4.87E-04
44GO:0005344: oxygen transporter activity4.87E-04
45GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.87E-04
46GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity4.87E-04
47GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.87E-04
48GO:0005227: calcium activated cation channel activity4.87E-04
49GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity4.87E-04
50GO:0004856: xylulokinase activity4.87E-04
51GO:0016776: phosphotransferase activity, phosphate group as acceptor4.87E-04
52GO:0009496: plastoquinol--plastocyanin reductase activity4.87E-04
53GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.87E-04
54GO:0080042: ADP-glucose pyrophosphohydrolase activity4.87E-04
55GO:0005080: protein kinase C binding4.87E-04
56GO:0004033: aldo-keto reductase (NADP) activity6.17E-04
57GO:0003735: structural constituent of ribosome8.38E-04
58GO:0048038: quinone binding9.65E-04
59GO:0052833: inositol monophosphate 4-phosphatase activity1.05E-03
60GO:0004826: phenylalanine-tRNA ligase activity1.05E-03
61GO:0004412: homoserine dehydrogenase activity1.05E-03
62GO:0050017: L-3-cyanoalanine synthase activity1.05E-03
63GO:0042389: omega-3 fatty acid desaturase activity1.05E-03
64GO:0080041: ADP-ribose pyrophosphohydrolase activity1.05E-03
65GO:0009977: proton motive force dependent protein transmembrane transporter activity1.05E-03
66GO:0004617: phosphoglycerate dehydrogenase activity1.05E-03
67GO:0052832: inositol monophosphate 3-phosphatase activity1.05E-03
68GO:0033201: alpha-1,4-glucan synthase activity1.05E-03
69GO:0003844: 1,4-alpha-glucan branching enzyme activity1.05E-03
70GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.05E-03
71GO:0016630: protochlorophyllide reductase activity1.05E-03
72GO:0004829: threonine-tRNA ligase activity1.05E-03
73GO:0019156: isoamylase activity1.05E-03
74GO:0008934: inositol monophosphate 1-phosphatase activity1.05E-03
75GO:0005525: GTP binding1.68E-03
76GO:0004751: ribose-5-phosphate isomerase activity1.71E-03
77GO:0004148: dihydrolipoyl dehydrogenase activity1.71E-03
78GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.71E-03
79GO:0008864: formyltetrahydrofolate deformylase activity1.71E-03
80GO:0015462: ATPase-coupled protein transmembrane transporter activity1.71E-03
81GO:0004324: ferredoxin-NADP+ reductase activity1.71E-03
82GO:0005504: fatty acid binding1.71E-03
83GO:0043169: cation binding1.71E-03
84GO:0004373: glycogen (starch) synthase activity1.71E-03
85GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.71E-03
86GO:0003913: DNA photolyase activity1.71E-03
87GO:0003723: RNA binding2.29E-03
88GO:0043023: ribosomal large subunit binding2.48E-03
89GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.48E-03
90GO:0004351: glutamate decarboxylase activity2.48E-03
91GO:0004072: aspartate kinase activity2.48E-03
92GO:0004792: thiosulfate sulfurtransferase activity2.48E-03
93GO:0003729: mRNA binding2.67E-03
94GO:0043495: protein anchor3.34E-03
95GO:0016279: protein-lysine N-methyltransferase activity3.34E-03
96GO:0004845: uracil phosphoribosyltransferase activity3.34E-03
97GO:0070628: proteasome binding3.34E-03
98GO:0045430: chalcone isomerase activity3.34E-03
99GO:0004045: aminoacyl-tRNA hydrolase activity3.34E-03
100GO:0009011: starch synthase activity3.34E-03
101GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity3.34E-03
102GO:0016773: phosphotransferase activity, alcohol group as acceptor4.28E-03
103GO:0008374: O-acyltransferase activity4.28E-03
104GO:0051537: 2 iron, 2 sulfur cluster binding4.47E-03
105GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.30E-03
106GO:0042578: phosphoric ester hydrolase activity5.30E-03
107GO:0004332: fructose-bisphosphate aldolase activity5.30E-03
108GO:0031593: polyubiquitin binding5.30E-03
109GO:0004629: phospholipase C activity5.30E-03
110GO:0004556: alpha-amylase activity5.30E-03
111GO:0004130: cytochrome-c peroxidase activity5.30E-03
112GO:0016853: isomerase activity6.23E-03
113GO:0005261: cation channel activity6.40E-03
114GO:0004124: cysteine synthase activity6.40E-03
115GO:0004849: uridine kinase activity6.40E-03
116GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.40E-03
117GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.40E-03
118GO:0004435: phosphatidylinositol phospholipase C activity6.40E-03
119GO:0019899: enzyme binding7.57E-03
120GO:0009881: photoreceptor activity7.57E-03
121GO:0008312: 7S RNA binding8.81E-03
122GO:0004034: aldose 1-epimerase activity8.81E-03
123GO:0051082: unfolded protein binding9.30E-03
124GO:0016597: amino acid binding9.81E-03
125GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.01E-02
126GO:0008135: translation factor activity, RNA binding1.01E-02
127GO:0071949: FAD binding1.15E-02
128GO:0030955: potassium ion binding1.29E-02
129GO:0008236: serine-type peptidase activity1.29E-02
130GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.29E-02
131GO:0004743: pyruvate kinase activity1.29E-02
132GO:0030170: pyridoxal phosphate binding1.42E-02
133GO:0004222: metalloendopeptidase activity1.50E-02
134GO:0005089: Rho guanyl-nucleotide exchange factor activity1.60E-02
135GO:0000049: tRNA binding1.76E-02
136GO:0003993: acid phosphatase activity1.81E-02
137GO:0005509: calcium ion binding1.83E-02
138GO:0005315: inorganic phosphate transmembrane transporter activity1.93E-02
139GO:0004565: beta-galactosidase activity1.93E-02
140GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.11E-02
141GO:0003924: GTPase activity2.13E-02
142GO:0004364: glutathione transferase activity2.14E-02
143GO:0004185: serine-type carboxypeptidase activity2.23E-02
144GO:0051536: iron-sulfur cluster binding2.66E-02
145GO:0043130: ubiquitin binding2.66E-02
146GO:0051287: NAD binding2.71E-02
147GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.01E-02
148GO:0004176: ATP-dependent peptidase activity3.05E-02
149GO:0004601: peroxidase activity3.23E-02
150GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.25E-02
151GO:0022891: substrate-specific transmembrane transporter activity3.46E-02
152GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.67E-02
153GO:0008514: organic anion transmembrane transporter activity3.67E-02
154GO:0003756: protein disulfide isomerase activity3.67E-02
155GO:0016787: hydrolase activity3.82E-02
156GO:0016887: ATPase activity4.05E-02
157GO:0008080: N-acetyltransferase activity4.33E-02
158GO:0005355: glucose transmembrane transporter activity4.56E-02
159GO:0050662: coenzyme binding4.56E-02
160GO:0004872: receptor activity4.80E-02
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Gene type



Gene DE type