Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0034756: regulation of iron ion transport0.00E+00
2GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
3GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
4GO:0002084: protein depalmitoylation0.00E+00
5GO:0010055: atrichoblast differentiation0.00E+00
6GO:0006654: phosphatidic acid biosynthetic process0.00E+00
7GO:0072722: response to amitrole0.00E+00
8GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
9GO:0010793: regulation of mRNA export from nucleus0.00E+00
10GO:0009814: defense response, incompatible interaction8.66E-06
11GO:0006517: protein deglycosylation1.59E-05
12GO:0051707: response to other organism2.33E-05
13GO:0006623: protein targeting to vacuole2.77E-05
14GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.14E-04
15GO:0009700: indole phytoalexin biosynthetic process3.14E-04
16GO:0032107: regulation of response to nutrient levels3.14E-04
17GO:0042868: antisense RNA metabolic process3.14E-04
18GO:0031123: RNA 3'-end processing3.14E-04
19GO:0098789: pre-mRNA cleavage required for polyadenylation3.14E-04
20GO:0090332: stomatal closure5.66E-04
21GO:0051607: defense response to virus6.33E-04
22GO:0009615: response to virus6.81E-04
23GO:0051252: regulation of RNA metabolic process6.87E-04
24GO:0006996: organelle organization6.87E-04
25GO:0009156: ribonucleoside monophosphate biosynthetic process6.87E-04
26GO:0015709: thiosulfate transport6.87E-04
27GO:0071422: succinate transmembrane transport6.87E-04
28GO:0046939: nucleotide phosphorylation6.87E-04
29GO:0080151: positive regulation of salicylic acid mediated signaling pathway6.87E-04
30GO:1902066: regulation of cell wall pectin metabolic process6.87E-04
31GO:0050684: regulation of mRNA processing6.87E-04
32GO:0019725: cellular homeostasis6.87E-04
33GO:0042853: L-alanine catabolic process6.87E-04
34GO:0006788: heme oxidation1.11E-03
35GO:0045836: positive regulation of meiotic nuclear division1.11E-03
36GO:0010186: positive regulation of cellular defense response1.11E-03
37GO:0015783: GDP-fucose transport1.11E-03
38GO:0048586: regulation of long-day photoperiodism, flowering1.11E-03
39GO:0032922: circadian regulation of gene expression1.11E-03
40GO:1901672: positive regulation of systemic acquired resistance1.11E-03
41GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process1.11E-03
42GO:0010272: response to silver ion1.11E-03
43GO:0032784: regulation of DNA-templated transcription, elongation1.11E-03
44GO:0060968: regulation of gene silencing1.11E-03
45GO:0061158: 3'-UTR-mediated mRNA destabilization1.11E-03
46GO:1902290: positive regulation of defense response to oomycetes1.60E-03
47GO:0010104: regulation of ethylene-activated signaling pathway1.60E-03
48GO:0006515: misfolded or incompletely synthesized protein catabolic process1.60E-03
49GO:0055089: fatty acid homeostasis1.60E-03
50GO:0000187: activation of MAPK activity1.60E-03
51GO:0006516: glycoprotein catabolic process1.60E-03
52GO:0010731: protein glutathionylation1.60E-03
53GO:0015729: oxaloacetate transport1.60E-03
54GO:0042742: defense response to bacterium1.86E-03
55GO:0010188: response to microbial phytotoxin2.14E-03
56GO:0010363: regulation of plant-type hypersensitive response2.14E-03
57GO:0009165: nucleotide biosynthetic process2.14E-03
58GO:0060548: negative regulation of cell death2.14E-03
59GO:0033320: UDP-D-xylose biosynthetic process2.14E-03
60GO:0045927: positive regulation of growth2.74E-03
61GO:0031365: N-terminal protein amino acid modification2.74E-03
62GO:0071423: malate transmembrane transport2.74E-03
63GO:0009435: NAD biosynthetic process2.74E-03
64GO:0042176: regulation of protein catabolic process3.38E-03
65GO:0060918: auxin transport3.38E-03
66GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.38E-03
67GO:0006139: nucleobase-containing compound metabolic process3.38E-03
68GO:0035435: phosphate ion transmembrane transport3.38E-03
69GO:0042732: D-xylose metabolic process3.38E-03
70GO:2000014: regulation of endosperm development4.80E-03
71GO:0008272: sulfate transport4.80E-03
72GO:0000122: negative regulation of transcription from RNA polymerase II promoter4.80E-03
73GO:0071446: cellular response to salicylic acid stimulus4.80E-03
74GO:1900056: negative regulation of leaf senescence4.80E-03
75GO:0080186: developmental vegetative growth4.80E-03
76GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline5.57E-03
77GO:0009819: drought recovery5.57E-03
78GO:0006491: N-glycan processing5.57E-03
79GO:1900150: regulation of defense response to fungus5.57E-03
80GO:0009816: defense response to bacterium, incompatible interaction5.68E-03
81GO:0006952: defense response5.83E-03
82GO:0009627: systemic acquired resistance6.00E-03
83GO:2000031: regulation of salicylic acid mediated signaling pathway6.39E-03
84GO:0010120: camalexin biosynthetic process6.39E-03
85GO:0006002: fructose 6-phosphate metabolic process6.39E-03
86GO:0008219: cell death7.02E-03
87GO:0010112: regulation of systemic acquired resistance7.24E-03
88GO:0048589: developmental growth7.24E-03
89GO:0015780: nucleotide-sugar transport7.24E-03
90GO:0010150: leaf senescence8.09E-03
91GO:0009631: cold acclimation8.12E-03
92GO:0010043: response to zinc ion8.12E-03
93GO:0008202: steroid metabolic process8.14E-03
94GO:0048268: clathrin coat assembly8.14E-03
95GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway8.14E-03
96GO:1900426: positive regulation of defense response to bacterium8.14E-03
97GO:0043067: regulation of programmed cell death8.14E-03
98GO:0000724: double-strand break repair via homologous recombination8.51E-03
99GO:0043069: negative regulation of programmed cell death9.07E-03
100GO:0006032: chitin catabolic process9.07E-03
101GO:0000272: polysaccharide catabolic process1.00E-02
102GO:0009089: lysine biosynthetic process via diaminopimelate1.00E-02
103GO:0009617: response to bacterium1.01E-02
104GO:0006631: fatty acid metabolic process1.06E-02
105GO:0042542: response to hydrogen peroxide1.10E-02
106GO:0016925: protein sumoylation1.11E-02
107GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.11E-02
108GO:0006790: sulfur compound metabolic process1.11E-02
109GO:0000209: protein polyubiquitination1.20E-02
110GO:2000028: regulation of photoperiodism, flowering1.21E-02
111GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.21E-02
112GO:0050826: response to freezing1.21E-02
113GO:0006626: protein targeting to mitochondrion1.21E-02
114GO:0009636: response to toxic substance1.29E-02
115GO:0016310: phosphorylation1.29E-02
116GO:0006541: glutamine metabolic process1.32E-02
117GO:0002237: response to molecule of bacterial origin1.32E-02
118GO:0000165: MAPK cascade1.40E-02
119GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.40E-02
120GO:0042343: indole glucosinolate metabolic process1.43E-02
121GO:0070588: calcium ion transmembrane transport1.43E-02
122GO:0046854: phosphatidylinositol phosphorylation1.43E-02
123GO:0010053: root epidermal cell differentiation1.43E-02
124GO:0009225: nucleotide-sugar metabolic process1.43E-02
125GO:0010039: response to iron ion1.43E-02
126GO:0071732: cellular response to nitric oxide1.43E-02
127GO:0034976: response to endoplasmic reticulum stress1.54E-02
128GO:0006636: unsaturated fatty acid biosynthetic process1.54E-02
129GO:0006289: nucleotide-excision repair1.66E-02
130GO:0009116: nucleoside metabolic process1.66E-02
131GO:0016998: cell wall macromolecule catabolic process1.91E-02
132GO:0098542: defense response to other organism1.91E-02
133GO:0031408: oxylipin biosynthetic process1.91E-02
134GO:0051321: meiotic cell cycle1.91E-02
135GO:0006334: nucleosome assembly1.91E-02
136GO:0009620: response to fungus2.02E-02
137GO:0071456: cellular response to hypoxia2.03E-02
138GO:2000022: regulation of jasmonic acid mediated signaling pathway2.03E-02
139GO:0030433: ubiquitin-dependent ERAD pathway2.03E-02
140GO:0071369: cellular response to ethylene stimulus2.16E-02
141GO:0009625: response to insect2.16E-02
142GO:0010227: floral organ abscission2.16E-02
143GO:0006012: galactose metabolic process2.16E-02
144GO:0042147: retrograde transport, endosome to Golgi2.43E-02
145GO:0010051: xylem and phloem pattern formation2.57E-02
146GO:0042391: regulation of membrane potential2.57E-02
147GO:0009960: endosperm development2.71E-02
148GO:0009751: response to salicylic acid2.97E-02
149GO:0010183: pollen tube guidance3.00E-02
150GO:0006629: lipid metabolic process3.02E-02
151GO:0010193: response to ozone3.15E-02
152GO:0006891: intra-Golgi vesicle-mediated transport3.15E-02
153GO:0031047: gene silencing by RNA3.30E-02
154GO:0016032: viral process3.30E-02
155GO:0030163: protein catabolic process3.45E-02
156GO:0071281: cellular response to iron ion3.45E-02
157GO:0006904: vesicle docking involved in exocytosis3.77E-02
158GO:0001666: response to hypoxia4.09E-02
159GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.25E-02
160GO:0006888: ER to Golgi vesicle-mediated transport4.59E-02
RankGO TermAdjusted P value
1GO:0008752: FMN reductase activity0.00E+00
2GO:0034338: short-chain carboxylesterase activity0.00E+00
3GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
4GO:0051766: inositol trisphosphate kinase activity0.00E+00
5GO:0051765: inositol tetrakisphosphate kinase activity0.00E+00
6GO:0019205: nucleobase-containing compound kinase activity0.00E+00
7GO:0044318: L-aspartate:fumarate oxidoreductase activity0.00E+00
8GO:0052873: FMN reductase (NADPH) activity0.00E+00
9GO:0008734: L-aspartate oxidase activity0.00E+00
10GO:0051670: inulinase activity0.00E+00
11GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
12GO:0051669: fructan beta-fructosidase activity3.14E-04
13GO:0010285: L,L-diaminopimelate aminotransferase activity3.14E-04
14GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity3.14E-04
15GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity3.14E-04
16GO:0047326: inositol tetrakisphosphate 5-kinase activity3.14E-04
17GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity3.14E-04
18GO:0000824: inositol tetrakisphosphate 3-kinase activity3.14E-04
19GO:0031219: levanase activity3.14E-04
20GO:0004708: MAP kinase kinase activity3.24E-04
21GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity5.88E-04
22GO:0004568: chitinase activity6.60E-04
23GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity6.87E-04
24GO:0008805: carbon-monoxide oxygenase activity6.87E-04
25GO:0004566: beta-glucuronidase activity6.87E-04
26GO:0015117: thiosulfate transmembrane transporter activity6.87E-04
27GO:0008428: ribonuclease inhibitor activity6.87E-04
28GO:0004338: glucan exo-1,3-beta-glucosidase activity6.87E-04
29GO:1901677: phosphate transmembrane transporter activity6.87E-04
30GO:0005310: dicarboxylic acid transmembrane transporter activity1.11E-03
31GO:0015141: succinate transmembrane transporter activity1.11E-03
32GO:0005457: GDP-fucose transmembrane transporter activity1.11E-03
33GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.11E-03
34GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.11E-03
35GO:0004867: serine-type endopeptidase inhibitor activity1.24E-03
36GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.60E-03
37GO:0015131: oxaloacetate transmembrane transporter activity1.60E-03
38GO:0035529: NADH pyrophosphatase activity1.60E-03
39GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.60E-03
40GO:0017077: oxidative phosphorylation uncoupler activity1.60E-03
41GO:0004749: ribose phosphate diphosphokinase activity1.60E-03
42GO:0019201: nucleotide kinase activity1.60E-03
43GO:0004392: heme oxygenase (decyclizing) activity2.14E-03
44GO:0031386: protein tag2.74E-03
45GO:0047631: ADP-ribose diphosphatase activity2.74E-03
46GO:0008948: oxaloacetate decarboxylase activity2.74E-03
47GO:0004040: amidase activity2.74E-03
48GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.74E-03
49GO:0004623: phospholipase A2 activity2.74E-03
50GO:0048040: UDP-glucuronate decarboxylase activity3.38E-03
51GO:0047714: galactolipase activity3.38E-03
52GO:0000210: NAD+ diphosphatase activity3.38E-03
53GO:0008474: palmitoyl-(protein) hydrolase activity3.38E-03
54GO:0035252: UDP-xylosyltransferase activity3.38E-03
55GO:0004656: procollagen-proline 4-dioxygenase activity4.06E-03
56GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.06E-03
57GO:0005261: cation channel activity4.06E-03
58GO:0004017: adenylate kinase activity4.06E-03
59GO:0070403: NAD+ binding4.06E-03
60GO:0004620: phospholipase activity4.80E-03
61GO:0003872: 6-phosphofructokinase activity4.80E-03
62GO:0015140: malate transmembrane transporter activity4.80E-03
63GO:0008235: metalloexopeptidase activity4.80E-03
64GO:0102425: myricetin 3-O-glucosyltransferase activity4.80E-03
65GO:0102360: daphnetin 3-O-glucosyltransferase activity4.80E-03
66GO:0004034: aldose 1-epimerase activity5.57E-03
67GO:0047893: flavonol 3-O-glucosyltransferase activity5.57E-03
68GO:0005544: calcium-dependent phospholipid binding5.57E-03
69GO:0004525: ribonuclease III activity5.57E-03
70GO:0004806: triglyceride lipase activity6.33E-03
71GO:0030247: polysaccharide binding6.33E-03
72GO:0008970: phosphatidylcholine 1-acylhydrolase activity6.39E-03
73GO:0008142: oxysterol binding6.39E-03
74GO:0030145: manganese ion binding8.12E-03
75GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors8.90E-03
76GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity9.07E-03
77GO:0005545: 1-phosphatidylinositol binding9.07E-03
78GO:0030234: enzyme regulator activity9.07E-03
79GO:0004177: aminopeptidase activity1.00E-02
80GO:0008559: xenobiotic-transporting ATPase activity1.00E-02
81GO:0047372: acylglycerol lipase activity1.00E-02
82GO:0005524: ATP binding1.09E-02
83GO:0015116: sulfate transmembrane transporter activity1.11E-02
84GO:0005388: calcium-transporting ATPase activity1.21E-02
85GO:0004565: beta-galactosidase activity1.21E-02
86GO:0046872: metal ion binding1.31E-02
87GO:0031624: ubiquitin conjugating enzyme binding1.32E-02
88GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.32E-02
89GO:0008061: chitin binding1.43E-02
90GO:0030552: cAMP binding1.43E-02
91GO:0003712: transcription cofactor activity1.43E-02
92GO:0030553: cGMP binding1.43E-02
93GO:0043531: ADP binding1.59E-02
94GO:0016298: lipase activity1.61E-02
95GO:0001046: core promoter sequence-specific DNA binding1.66E-02
96GO:0031418: L-ascorbic acid binding1.66E-02
97GO:0031625: ubiquitin protein ligase binding1.72E-02
98GO:0005216: ion channel activity1.78E-02
99GO:0045735: nutrient reservoir activity1.84E-02
100GO:0004497: monooxygenase activity1.85E-02
101GO:0035251: UDP-glucosyltransferase activity1.91E-02
102GO:0008810: cellulase activity2.16E-02
103GO:0003727: single-stranded RNA binding2.29E-02
104GO:0003756: protein disulfide isomerase activity2.29E-02
105GO:0004499: N,N-dimethylaniline monooxygenase activity2.29E-02
106GO:0004674: protein serine/threonine kinase activity2.40E-02
107GO:0016740: transferase activity2.52E-02
108GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.56E-02
109GO:0016787: hydrolase activity2.57E-02
110GO:0030551: cyclic nucleotide binding2.57E-02
111GO:0005249: voltage-gated potassium channel activity2.57E-02
112GO:0016301: kinase activity2.67E-02
113GO:0030276: clathrin binding2.71E-02
114GO:0001085: RNA polymerase II transcription factor binding2.71E-02
115GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.85E-02
116GO:0010181: FMN binding2.85E-02
117GO:0016853: isomerase activity2.85E-02
118GO:0030170: pyridoxal phosphate binding3.08E-02
119GO:0004842: ubiquitin-protein transferase activity3.14E-02
120GO:0005516: calmodulin binding3.43E-02
121GO:0016791: phosphatase activity3.61E-02
122GO:0015297: antiporter activity3.66E-02
123GO:0008483: transaminase activity3.77E-02
124GO:0051213: dioxygenase activity4.09E-02
125GO:0008375: acetylglucosaminyltransferase activity4.42E-02
126GO:0004683: calmodulin-dependent protein kinase activity4.59E-02
127GO:0016798: hydrolase activity, acting on glycosyl bonds4.59E-02
128GO:0004721: phosphoprotein phosphatase activity4.59E-02
129GO:0005509: calcium ion binding4.68E-02
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Gene type



Gene DE type