Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G54140

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032491: detection of molecule of fungal origin0.00E+00
2GO:0051553: flavone biosynthetic process0.00E+00
3GO:0036503: ERAD pathway0.00E+00
4GO:0006497: protein lipidation0.00E+00
5GO:0032499: detection of peptidoglycan0.00E+00
6GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
7GO:0006654: phosphatidic acid biosynthetic process0.00E+00
8GO:1902001: fatty acid transmembrane transport0.00E+00
9GO:0006216: cytidine catabolic process0.00E+00
10GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
11GO:0033198: response to ATP0.00E+00
12GO:0046109: uridine biosynthetic process0.00E+00
13GO:0009312: oligosaccharide biosynthetic process0.00E+00
14GO:0006952: defense response2.19E-05
15GO:0000266: mitochondrial fission1.18E-04
16GO:0006486: protein glycosylation1.63E-04
17GO:0002237: response to molecule of bacterial origin1.71E-04
18GO:0002238: response to molecule of fungal origin2.68E-04
19GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.59E-04
20GO:0046470: phosphatidylcholine metabolic process4.62E-04
21GO:0042759: long-chain fatty acid biosynthetic process4.64E-04
22GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.64E-04
23GO:0033306: phytol metabolic process4.64E-04
24GO:0090567: reproductive shoot system development4.64E-04
25GO:0010045: response to nickel cation4.64E-04
26GO:0016559: peroxisome fission5.75E-04
27GO:0042391: regulation of membrane potential6.16E-04
28GO:0042742: defense response to bacterium7.96E-04
29GO:1900426: positive regulation of defense response to bacterium9.90E-04
30GO:0048268: clathrin coat assembly9.90E-04
31GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine1.00E-03
32GO:0010541: acropetal auxin transport1.00E-03
33GO:0015012: heparan sulfate proteoglycan biosynthetic process1.00E-03
34GO:0071668: plant-type cell wall assembly1.00E-03
35GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.00E-03
36GO:0006024: glycosaminoglycan biosynthetic process1.00E-03
37GO:0055088: lipid homeostasis1.00E-03
38GO:0015908: fatty acid transport1.00E-03
39GO:0002240: response to molecule of oomycetes origin1.00E-03
40GO:0010115: regulation of abscisic acid biosynthetic process1.00E-03
41GO:0060919: auxin influx1.00E-03
42GO:0010042: response to manganese ion1.00E-03
43GO:0010271: regulation of chlorophyll catabolic process1.00E-03
44GO:0009620: response to fungus1.48E-03
45GO:0010498: proteasomal protein catabolic process1.63E-03
46GO:1900055: regulation of leaf senescence1.63E-03
47GO:0002230: positive regulation of defense response to virus by host1.63E-03
48GO:0006468: protein phosphorylation1.71E-03
49GO:0034605: cellular response to heat1.95E-03
50GO:0007165: signal transduction2.04E-03
51GO:0071323: cellular response to chitin2.37E-03
52GO:1902290: positive regulation of defense response to oomycetes2.37E-03
53GO:0046513: ceramide biosynthetic process2.37E-03
54GO:0002239: response to oomycetes2.37E-03
55GO:0009052: pentose-phosphate shunt, non-oxidative branch2.37E-03
56GO:0010306: rhamnogalacturonan II biosynthetic process2.37E-03
57GO:0045227: capsule polysaccharide biosynthetic process3.18E-03
58GO:0045088: regulation of innate immune response3.18E-03
59GO:0033358: UDP-L-arabinose biosynthetic process3.18E-03
60GO:0033356: UDP-L-arabinose metabolic process3.18E-03
61GO:0071219: cellular response to molecule of bacterial origin3.18E-03
62GO:0009814: defense response, incompatible interaction3.59E-03
63GO:0010150: leaf senescence3.95E-03
64GO:0098719: sodium ion import across plasma membrane4.08E-03
65GO:0031365: N-terminal protein amino acid modification4.08E-03
66GO:0009229: thiamine diphosphate biosynthetic process4.08E-03
67GO:0009435: NAD biosynthetic process4.08E-03
68GO:0016094: polyprenol biosynthetic process4.08E-03
69GO:0009247: glycolipid biosynthetic process4.08E-03
70GO:0006014: D-ribose metabolic process5.05E-03
71GO:0009972: cytidine deamination5.05E-03
72GO:0010405: arabinogalactan protein metabolic process5.05E-03
73GO:0010315: auxin efflux5.05E-03
74GO:0018258: protein O-linked glycosylation via hydroxyproline5.05E-03
75GO:0009228: thiamine biosynthetic process5.05E-03
76GO:1900425: negative regulation of defense response to bacterium5.05E-03
77GO:0033365: protein localization to organelle5.05E-03
78GO:0010337: regulation of salicylic acid metabolic process5.05E-03
79GO:0016042: lipid catabolic process5.23E-03
80GO:0050832: defense response to fungus5.37E-03
81GO:0009751: response to salicylic acid5.37E-03
82GO:0010038: response to metal ion7.20E-03
83GO:0071446: cellular response to salicylic acid stimulus7.20E-03
84GO:1900056: negative regulation of leaf senescence7.20E-03
85GO:1900057: positive regulation of leaf senescence7.20E-03
86GO:0019375: galactolipid biosynthetic process8.39E-03
87GO:0006102: isocitrate metabolic process8.39E-03
88GO:1900150: regulation of defense response to fungus8.39E-03
89GO:0043068: positive regulation of programmed cell death8.39E-03
90GO:0006997: nucleus organization9.63E-03
91GO:0010204: defense response signaling pathway, resistance gene-independent9.63E-03
92GO:0010208: pollen wall assembly9.63E-03
93GO:0006367: transcription initiation from RNA polymerase II promoter9.63E-03
94GO:0009816: defense response to bacterium, incompatible interaction1.02E-02
95GO:0010112: regulation of systemic acquired resistance1.09E-02
96GO:0009060: aerobic respiration1.09E-02
97GO:0019432: triglyceride biosynthetic process1.09E-02
98GO:0051453: regulation of intracellular pH1.23E-02
99GO:0048354: mucilage biosynthetic process involved in seed coat development1.23E-02
100GO:0010380: regulation of chlorophyll biosynthetic process1.23E-02
101GO:0009817: defense response to fungus, incompatible interaction1.27E-02
102GO:0030244: cellulose biosynthetic process1.27E-02
103GO:0010629: negative regulation of gene expression1.37E-02
104GO:0006499: N-terminal protein myristoylation1.40E-02
105GO:0010043: response to zinc ion1.47E-02
106GO:0007568: aging1.47E-02
107GO:0030148: sphingolipid biosynthetic process1.52E-02
108GO:0009682: induced systemic resistance1.52E-02
109GO:0006099: tricarboxylic acid cycle1.68E-02
110GO:0006790: sulfur compound metabolic process1.68E-02
111GO:0045037: protein import into chloroplast stroma1.68E-02
112GO:0055046: microgametogenesis1.84E-02
113GO:0010102: lateral root morphogenesis1.84E-02
114GO:0010628: positive regulation of gene expression1.84E-02
115GO:0006897: endocytosis1.92E-02
116GO:0010540: basipetal auxin transport2.00E-02
117GO:0006470: protein dephosphorylation2.02E-02
118GO:0051707: response to other organism2.08E-02
119GO:0000209: protein polyubiquitination2.16E-02
120GO:0070588: calcium ion transmembrane transport2.17E-02
121GO:0046854: phosphatidylinositol phosphorylation2.17E-02
122GO:0010053: root epidermal cell differentiation2.17E-02
123GO:0009225: nucleotide-sugar metabolic process2.17E-02
124GO:0034976: response to endoplasmic reticulum stress2.35E-02
125GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process2.52E-02
126GO:2000377: regulation of reactive oxygen species metabolic process2.53E-02
127GO:0080147: root hair cell development2.53E-02
128GO:0010073: meristem maintenance2.71E-02
129GO:0003333: amino acid transmembrane transport2.90E-02
130GO:0015031: protein transport2.92E-02
131GO:0016567: protein ubiquitination3.06E-02
132GO:0007005: mitochondrion organization3.09E-02
133GO:0071456: cellular response to hypoxia3.09E-02
134GO:0030245: cellulose catabolic process3.09E-02
135GO:0006012: galactose metabolic process3.29E-02
136GO:0010584: pollen exine formation3.49E-02
137GO:0006284: base-excision repair3.49E-02
138GO:0009561: megagametogenesis3.49E-02
139GO:0070417: cellular response to cold3.70E-02
140GO:0008033: tRNA processing3.91E-02
141GO:0000413: protein peptidyl-prolyl isomerization3.91E-02
142GO:0010200: response to chitin4.03E-02
143GO:0071472: cellular response to salt stress4.12E-02
144GO:0044550: secondary metabolite biosynthetic process4.28E-02
145GO:0048544: recognition of pollen4.34E-02
146GO:0006814: sodium ion transport4.34E-02
147GO:0019252: starch biosynthetic process4.56E-02
148GO:0002229: defense response to oomycetes4.78E-02
149GO:0010193: response to ozone4.78E-02
150GO:0000302: response to reactive oxygen species4.78E-02
RankGO TermAdjusted P value
1GO:2001080: chitosan binding0.00E+00
2GO:0034338: short-chain carboxylesterase activity0.00E+00
3GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
4GO:0052821: DNA-7-methyladenine glycosylase activity0.00E+00
5GO:0033759: flavone synthase activity0.00E+00
6GO:0003905: alkylbase DNA N-glycosylase activity0.00E+00
7GO:0044318: L-aspartate:fumarate oxidoreductase activity0.00E+00
8GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
9GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
10GO:0008734: L-aspartate oxidase activity0.00E+00
11GO:0047844: deoxycytidine deaminase activity0.00E+00
12GO:0005212: structural constituent of eye lens0.00E+00
13GO:0052822: DNA-3-methylguanine glycosylase activity0.00E+00
14GO:0043916: DNA-7-methylguanine glycosylase activity0.00E+00
15GO:0050334: thiaminase activity0.00E+00
16GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
17GO:0004630: phospholipase D activity3.30E-05
18GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity3.30E-05
19GO:0070696: transmembrane receptor protein serine/threonine kinase binding1.89E-04
20GO:0030552: cAMP binding2.02E-04
21GO:0030553: cGMP binding2.02E-04
22GO:0005216: ion channel activity3.12E-04
23GO:0016301: kinase activity4.43E-04
24GO:0019707: protein-cysteine S-acyltransferase activity4.64E-04
25GO:0046481: digalactosyldiacylglycerol synthase activity4.64E-04
26GO:0015245: fatty acid transporter activity4.64E-04
27GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity4.64E-04
28GO:0004649: poly(ADP-ribose) glycohydrolase activity4.64E-04
29GO:0005249: voltage-gated potassium channel activity6.16E-04
30GO:0030551: cyclic nucleotide binding6.16E-04
31GO:0004675: transmembrane receptor protein serine/threonine kinase activity7.78E-04
32GO:0050291: sphingosine N-acyltransferase activity1.00E-03
33GO:0004809: tRNA (guanine-N2-)-methyltransferase activity1.00E-03
34GO:0019779: Atg8 activating enzyme activity1.00E-03
35GO:0045140: inositol phosphoceramide synthase activity1.00E-03
36GO:0005545: 1-phosphatidylinositol binding1.15E-03
37GO:0004751: ribose-5-phosphate isomerase activity1.63E-03
38GO:0000030: mannosyltransferase activity1.63E-03
39GO:0016174: NAD(P)H oxidase activity1.63E-03
40GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.63E-03
41GO:0004806: triglyceride lipase activity1.73E-03
42GO:0035529: NADH pyrophosphatase activity2.37E-03
43GO:0004449: isocitrate dehydrogenase (NAD+) activity2.37E-03
44GO:0035250: UDP-galactosyltransferase activity2.37E-03
45GO:0050373: UDP-arabinose 4-epimerase activity3.18E-03
46GO:0001075: transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly3.18E-03
47GO:0010328: auxin influx transmembrane transporter activity3.18E-03
48GO:0019199: transmembrane receptor protein kinase activity3.18E-03
49GO:0005496: steroid binding4.08E-03
50GO:0047631: ADP-ribose diphosphatase activity4.08E-03
51GO:0008725: DNA-3-methyladenine glycosylase activity4.08E-03
52GO:0005546: phosphatidylinositol-4,5-bisphosphate binding4.08E-03
53GO:0002094: polyprenyltransferase activity4.08E-03
54GO:0004623: phospholipase A2 activity4.08E-03
55GO:0004674: protein serine/threonine kinase activity4.22E-03
56GO:0005102: receptor binding4.62E-03
57GO:0035252: UDP-xylosyltransferase activity5.05E-03
58GO:1990714: hydroxyproline O-galactosyltransferase activity5.05E-03
59GO:0047714: galactolipase activity5.05E-03
60GO:0000210: NAD+ diphosphatase activity5.05E-03
61GO:0030276: clathrin binding5.39E-03
62GO:0004144: diacylglycerol O-acyltransferase activity6.09E-03
63GO:0004126: cytidine deaminase activity6.09E-03
64GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.09E-03
65GO:0004747: ribokinase activity6.09E-03
66GO:0005261: cation channel activity6.09E-03
67GO:0003978: UDP-glucose 4-epimerase activity6.09E-03
68GO:0008320: protein transmembrane transporter activity7.20E-03
69GO:0008235: metalloexopeptidase activity7.20E-03
70GO:0004708: MAP kinase kinase activity8.39E-03
71GO:0004714: transmembrane receptor protein tyrosine kinase activity8.39E-03
72GO:0008865: fructokinase activity8.39E-03
73GO:0008970: phosphatidylcholine 1-acylhydrolase activity9.63E-03
74GO:0008375: acetylglucosaminyltransferase activity1.08E-02
75GO:0008417: fucosyltransferase activity1.09E-02
76GO:0071949: FAD binding1.09E-02
77GO:0030955: potassium ion binding1.23E-02
78GO:0004743: pyruvate kinase activity1.23E-02
79GO:0004252: serine-type endopeptidase activity1.29E-02
80GO:0004842: ubiquitin-protein transferase activity1.34E-02
81GO:0004177: aminopeptidase activity1.52E-02
82GO:0008559: xenobiotic-transporting ATPase activity1.52E-02
83GO:0015386: potassium:proton antiporter activity1.52E-02
84GO:0004722: protein serine/threonine phosphatase activity1.61E-02
85GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.61E-02
86GO:0008378: galactosyltransferase activity1.68E-02
87GO:0000049: tRNA binding1.68E-02
88GO:0005388: calcium-transporting ATPase activity1.84E-02
89GO:0010329: auxin efflux transmembrane transporter activity1.84E-02
90GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.84E-02
91GO:0004190: aspartic-type endopeptidase activity2.17E-02
92GO:0008061: chitin binding2.17E-02
93GO:0005515: protein binding2.30E-02
94GO:0003954: NADH dehydrogenase activity2.53E-02
95GO:0008134: transcription factor binding2.53E-02
96GO:0019706: protein-cysteine S-palmitoyltransferase activity2.90E-02
97GO:0008408: 3'-5' exonuclease activity2.90E-02
98GO:0008810: cellulase activity3.29E-02
99GO:0043531: ADP binding3.32E-02
100GO:0003756: protein disulfide isomerase activity3.49E-02
101GO:0004499: N,N-dimethylaniline monooxygenase activity3.49E-02
102GO:0016887: ATPase activity3.66E-02
103GO:0004672: protein kinase activity3.80E-02
104GO:0016757: transferase activity, transferring glycosyl groups3.89E-02
105GO:0004527: exonuclease activity4.12E-02
106GO:0003713: transcription coactivator activity4.12E-02
107GO:0005509: calcium ion binding4.26E-02
108GO:0010181: FMN binding4.34E-02
109GO:0019901: protein kinase binding4.56E-02
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Gene type



Gene DE type