Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G53900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031222: arabinan catabolic process0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:0070979: protein K11-linked ubiquitination0.00E+00
4GO:1905421: regulation of plant organ morphogenesis0.00E+00
5GO:0043488: regulation of mRNA stability0.00E+00
6GO:0061157: mRNA destabilization0.00E+00
7GO:0030155: regulation of cell adhesion0.00E+00
8GO:0031116: positive regulation of microtubule polymerization0.00E+00
9GO:0010068: protoderm histogenesis0.00E+00
10GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
11GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
12GO:1903224: regulation of endodermal cell differentiation0.00E+00
13GO:0090071: negative regulation of ribosome biogenesis0.00E+00
14GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
15GO:1905177: tracheary element differentiation0.00E+00
16GO:0007638: mechanosensory behavior0.00E+00
17GO:0097164: ammonium ion metabolic process0.00E+00
18GO:0045184: establishment of protein localization0.00E+00
19GO:0015843: methylammonium transport0.00E+00
20GO:0046620: regulation of organ growth2.95E-10
21GO:0009734: auxin-activated signaling pathway2.30E-08
22GO:0009733: response to auxin1.17E-07
23GO:0040008: regulation of growth4.72E-07
24GO:0009926: auxin polar transport6.63E-06
25GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.23E-05
26GO:0005992: trehalose biosynthetic process7.48E-05
27GO:0000373: Group II intron splicing1.49E-04
28GO:0009658: chloroplast organization1.56E-04
29GO:0051513: regulation of monopolar cell growth1.72E-04
30GO:0032502: developmental process4.17E-04
31GO:0007275: multicellular organism development5.61E-04
32GO:0005991: trehalose metabolic process7.88E-04
33GO:0006747: FAD biosynthetic process7.88E-04
34GO:0051418: microtubule nucleation by microtubule organizing center7.88E-04
35GO:0070509: calcium ion import7.88E-04
36GO:0042659: regulation of cell fate specification7.88E-04
37GO:0010480: microsporocyte differentiation7.88E-04
38GO:0090558: plant epidermis development7.88E-04
39GO:0035987: endodermal cell differentiation7.88E-04
40GO:0006436: tryptophanyl-tRNA aminoacylation7.88E-04
41GO:0034080: CENP-A containing nucleosome assembly7.88E-04
42GO:0000066: mitochondrial ornithine transport7.88E-04
43GO:0006418: tRNA aminoacylation for protein translation8.71E-04
44GO:0048528: post-embryonic root development1.00E-03
45GO:0006468: protein phosphorylation1.14E-03
46GO:0007166: cell surface receptor signaling pathway1.24E-03
47GO:0042255: ribosome assembly1.25E-03
48GO:0070413: trehalose metabolism in response to stress1.25E-03
49GO:0007389: pattern specification process1.52E-03
50GO:0009657: plastid organization1.52E-03
51GO:2000123: positive regulation of stomatal complex development1.70E-03
52GO:0070981: L-asparagine biosynthetic process1.70E-03
53GO:0033566: gamma-tubulin complex localization1.70E-03
54GO:1900033: negative regulation of trichome patterning1.70E-03
55GO:0009220: pyrimidine ribonucleotide biosynthetic process1.70E-03
56GO:0009786: regulation of asymmetric cell division1.70E-03
57GO:0006423: cysteinyl-tRNA aminoacylation1.70E-03
58GO:0006529: asparagine biosynthetic process1.70E-03
59GO:0009638: phototropism2.17E-03
60GO:0071555: cell wall organization2.55E-03
61GO:0045910: negative regulation of DNA recombination2.82E-03
62GO:0006954: inflammatory response2.82E-03
63GO:0048281: inflorescence morphogenesis2.82E-03
64GO:0051127: positive regulation of actin nucleation2.82E-03
65GO:0090708: specification of plant organ axis polarity2.82E-03
66GO:0031145: anaphase-promoting complex-dependent catabolic process2.82E-03
67GO:0010623: programmed cell death involved in cell development2.82E-03
68GO:0009150: purine ribonucleotide metabolic process2.82E-03
69GO:0051604: protein maturation2.82E-03
70GO:0001578: microtubule bundle formation2.82E-03
71GO:0016050: vesicle organization2.82E-03
72GO:0007052: mitotic spindle organization2.82E-03
73GO:0009089: lysine biosynthetic process via diaminopimelate2.94E-03
74GO:0010252: auxin homeostasis3.12E-03
75GO:0009767: photosynthetic electron transport chain3.84E-03
76GO:2000012: regulation of auxin polar transport3.84E-03
77GO:0007231: osmosensory signaling pathway4.11E-03
78GO:0030071: regulation of mitotic metaphase/anaphase transition4.11E-03
79GO:0051639: actin filament network formation4.11E-03
80GO:0009226: nucleotide-sugar biosynthetic process4.11E-03
81GO:0048645: animal organ formation4.11E-03
82GO:0015696: ammonium transport4.11E-03
83GO:0046739: transport of virus in multicellular host4.11E-03
84GO:0044211: CTP salvage4.11E-03
85GO:0032981: mitochondrial respiratory chain complex I assembly4.11E-03
86GO:2000904: regulation of starch metabolic process4.11E-03
87GO:0019048: modulation by virus of host morphology or physiology4.11E-03
88GO:0090307: mitotic spindle assembly4.11E-03
89GO:0043572: plastid fission4.11E-03
90GO:0031048: chromatin silencing by small RNA4.11E-03
91GO:0010148: transpiration4.11E-03
92GO:0034508: centromere complex assembly4.11E-03
93GO:0016556: mRNA modification4.11E-03
94GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.11E-03
95GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center4.11E-03
96GO:0009067: aspartate family amino acid biosynthetic process4.11E-03
97GO:1902476: chloride transmembrane transport4.11E-03
98GO:0010020: chloroplast fission4.34E-03
99GO:0070588: calcium ion transmembrane transport4.87E-03
100GO:0006833: water transport5.44E-03
101GO:0030104: water homeostasis5.55E-03
102GO:0051764: actin crosslink formation5.55E-03
103GO:0033500: carbohydrate homeostasis5.55E-03
104GO:0051322: anaphase5.55E-03
105GO:2000038: regulation of stomatal complex development5.55E-03
106GO:0072488: ammonium transmembrane transport5.55E-03
107GO:0022622: root system development5.55E-03
108GO:0044205: 'de novo' UMP biosynthetic process5.55E-03
109GO:0051567: histone H3-K9 methylation5.55E-03
110GO:0010508: positive regulation of autophagy5.55E-03
111GO:0007020: microtubule nucleation5.55E-03
112GO:0009165: nucleotide biosynthetic process5.55E-03
113GO:0044206: UMP salvage5.55E-03
114GO:0048629: trichome patterning5.55E-03
115GO:0000160: phosphorelay signal transduction system5.88E-03
116GO:0009944: polarity specification of adaxial/abaxial axis6.05E-03
117GO:0009742: brassinosteroid mediated signaling pathway6.42E-03
118GO:0051302: regulation of cell division6.68E-03
119GO:0016123: xanthophyll biosynthetic process7.15E-03
120GO:0016131: brassinosteroid metabolic process7.15E-03
121GO:0010158: abaxial cell fate specification7.15E-03
122GO:0046785: microtubule polymerization7.15E-03
123GO:0032876: negative regulation of DNA endoreduplication7.15E-03
124GO:0010375: stomatal complex patterning7.15E-03
125GO:0032543: mitochondrial translation7.15E-03
126GO:0006544: glycine metabolic process7.15E-03
127GO:1902183: regulation of shoot apical meristem development7.15E-03
128GO:0031348: negative regulation of defense response8.07E-03
129GO:0009686: gibberellin biosynthetic process8.82E-03
130GO:0006839: mitochondrial transport8.85E-03
131GO:0009959: negative gravitropism8.88E-03
132GO:0006655: phosphatidylglycerol biosynthetic process8.88E-03
133GO:0006139: nucleobase-containing compound metabolic process8.88E-03
134GO:0016458: gene silencing8.88E-03
135GO:0006206: pyrimidine nucleobase metabolic process8.88E-03
136GO:0006563: L-serine metabolic process8.88E-03
137GO:0032973: amino acid export8.88E-03
138GO:0018258: protein O-linked glycosylation via hydroxyproline8.88E-03
139GO:0009228: thiamine biosynthetic process8.88E-03
140GO:0010405: arabinogalactan protein metabolic process8.88E-03
141GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.04E-02
142GO:2000067: regulation of root morphogenesis1.08E-02
143GO:0042372: phylloquinone biosynthetic process1.08E-02
144GO:0017148: negative regulation of translation1.08E-02
145GO:0009942: longitudinal axis specification1.08E-02
146GO:0030488: tRNA methylation1.08E-02
147GO:0009088: threonine biosynthetic process1.08E-02
148GO:0080086: stamen filament development1.08E-02
149GO:0006855: drug transmembrane transport1.26E-02
150GO:0006821: chloride transport1.28E-02
151GO:0043090: amino acid import1.28E-02
152GO:0070370: cellular heat acclimation1.28E-02
153GO:0010444: guard mother cell differentiation1.28E-02
154GO:0010050: vegetative phase change1.28E-02
155GO:0048437: floral organ development1.28E-02
156GO:0030307: positive regulation of cell growth1.28E-02
157GO:0010103: stomatal complex morphogenesis1.28E-02
158GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process1.28E-02
159GO:0032880: regulation of protein localization1.28E-02
160GO:0010161: red light signaling pathway1.28E-02
161GO:0009610: response to symbiotic fungus1.28E-02
162GO:0009646: response to absence of light1.31E-02
163GO:0006402: mRNA catabolic process1.49E-02
164GO:0009850: auxin metabolic process1.49E-02
165GO:0009787: regulation of abscisic acid-activated signaling pathway1.49E-02
166GO:0009704: de-etiolation1.49E-02
167GO:0032875: regulation of DNA endoreduplication1.49E-02
168GO:0055075: potassium ion homeostasis1.49E-02
169GO:0006353: DNA-templated transcription, termination1.49E-02
170GO:0009231: riboflavin biosynthetic process1.49E-02
171GO:0016132: brassinosteroid biosynthetic process1.51E-02
172GO:0009736: cytokinin-activated signaling pathway1.52E-02
173GO:0010583: response to cyclopentenone1.61E-02
174GO:0010099: regulation of photomorphogenesis1.71E-02
175GO:0001558: regulation of cell growth1.71E-02
176GO:0006002: fructose 6-phosphate metabolic process1.71E-02
177GO:0009827: plant-type cell wall modification1.71E-02
178GO:0010100: negative regulation of photomorphogenesis1.71E-02
179GO:0010497: plasmodesmata-mediated intercellular transport1.71E-02
180GO:0071281: cellular response to iron ion1.72E-02
181GO:0080144: amino acid homeostasis1.95E-02
182GO:0009051: pentose-phosphate shunt, oxidative branch1.95E-02
183GO:2000024: regulation of leaf development1.95E-02
184GO:0006098: pentose-phosphate shunt1.95E-02
185GO:0006783: heme biosynthetic process1.95E-02
186GO:0000902: cell morphogenesis1.95E-02
187GO:0051607: defense response to virus2.07E-02
188GO:0042761: very long-chain fatty acid biosynthetic process2.20E-02
189GO:2000280: regulation of root development2.20E-02
190GO:0035999: tetrahydrofolate interconversion2.20E-02
191GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway2.20E-02
192GO:0031425: chloroplast RNA processing2.20E-02
193GO:0071577: zinc II ion transmembrane transport2.20E-02
194GO:0009740: gibberellic acid mediated signaling pathway2.21E-02
195GO:0006949: syncytium formation2.45E-02
196GO:0009627: systemic acquired resistance2.45E-02
197GO:0006259: DNA metabolic process2.45E-02
198GO:0009299: mRNA transcription2.45E-02
199GO:0006535: cysteine biosynthetic process from serine2.45E-02
200GO:0030422: production of siRNA involved in RNA interference2.45E-02
201GO:0048829: root cap development2.45E-02
202GO:0009641: shade avoidance2.45E-02
203GO:0006298: mismatch repair2.45E-02
204GO:0010411: xyloglucan metabolic process2.59E-02
205GO:0010015: root morphogenesis2.72E-02
206GO:0006265: DNA topological change2.72E-02
207GO:0006816: calcium ion transport2.72E-02
208GO:1903507: negative regulation of nucleic acid-templated transcription2.72E-02
209GO:0009773: photosynthetic electron transport in photosystem I2.72E-02
210GO:0048229: gametophyte development2.72E-02
211GO:0006415: translational termination2.72E-02
212GO:0016310: phosphorylation2.77E-02
213GO:0006790: sulfur compound metabolic process3.00E-02
214GO:0016024: CDP-diacylglycerol biosynthetic process3.00E-02
215GO:0045037: protein import into chloroplast stroma3.00E-02
216GO:0010582: floral meristem determinacy3.00E-02
217GO:0009832: plant-type cell wall biogenesis3.01E-02
218GO:0009725: response to hormone3.28E-02
219GO:0006094: gluconeogenesis3.28E-02
220GO:0010628: positive regulation of gene expression3.28E-02
221GO:0006006: glucose metabolic process3.28E-02
222GO:0009785: blue light signaling pathway3.28E-02
223GO:0030036: actin cytoskeleton organization3.28E-02
224GO:0050826: response to freezing3.28E-02
225GO:0010075: regulation of meristem growth3.28E-02
226GO:0080167: response to karrikin3.57E-02
227GO:0009934: regulation of meristem structural organization3.58E-02
228GO:0010207: photosystem II assembly3.58E-02
229GO:0006541: glutamine metabolic process3.58E-02
230GO:0006810: transport3.69E-02
231GO:0009790: embryo development3.82E-02
232GO:0071732: cellular response to nitric oxide3.88E-02
233GO:0090351: seedling development3.88E-02
234GO:0010030: positive regulation of seed germination3.88E-02
235GO:0005975: carbohydrate metabolic process3.96E-02
236GO:0010025: wax biosynthetic process4.19E-02
237GO:0009833: plant-type primary cell wall biogenesis4.19E-02
238GO:0006071: glycerol metabolic process4.19E-02
239GO:0030154: cell differentiation4.36E-02
240GO:0019344: cysteine biosynthetic process4.51E-02
241GO:0009116: nucleoside metabolic process4.51E-02
242GO:0051017: actin filament bundle assembly4.51E-02
243GO:0030150: protein import into mitochondrial matrix4.51E-02
244GO:0007010: cytoskeleton organization4.51E-02
245GO:0010187: negative regulation of seed germination4.51E-02
246GO:0008283: cell proliferation4.67E-02
247GO:0007623: circadian rhythm4.69E-02
248GO:0006508: proteolysis4.79E-02
249GO:0043622: cortical microtubule organization4.84E-02
250GO:0006825: copper ion transport4.84E-02
251GO:0042546: cell wall biogenesis4.85E-02
RankGO TermAdjusted P value
1GO:0019136: deoxynucleoside kinase activity0.00E+00
2GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
3GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
4GO:0004823: leucine-tRNA ligase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0004056: argininosuccinate lyase activity0.00E+00
7GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.89E-04
8GO:0004805: trehalose-phosphatase activity2.41E-04
9GO:0019199: transmembrane receptor protein kinase activity2.88E-04
10GO:0050139: nicotinate-N-glucosyltransferase activity7.88E-04
11GO:0051777: ent-kaurenoate oxidase activity7.88E-04
12GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.88E-04
13GO:0005290: L-histidine transmembrane transporter activity7.88E-04
14GO:0004008: copper-exporting ATPase activity7.88E-04
15GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity7.88E-04
16GO:0004071: aspartate-ammonia ligase activity7.88E-04
17GO:0004830: tryptophan-tRNA ligase activity7.88E-04
18GO:0010285: L,L-diaminopimelate aminotransferase activity7.88E-04
19GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.88E-04
20GO:0010313: phytochrome binding7.88E-04
21GO:0003727: single-stranded RNA binding1.37E-03
22GO:0004812: aminoacyl-tRNA ligase activity1.52E-03
23GO:0004817: cysteine-tRNA ligase activity1.70E-03
24GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.70E-03
25GO:0003919: FMN adenylyltransferase activity1.70E-03
26GO:0000064: L-ornithine transmembrane transporter activity1.70E-03
27GO:0015929: hexosaminidase activity1.70E-03
28GO:0004563: beta-N-acetylhexosaminidase activity1.70E-03
29GO:0050017: L-3-cyanoalanine synthase activity1.70E-03
30GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.70E-03
31GO:0043425: bHLH transcription factor binding1.70E-03
32GO:0009672: auxin:proton symporter activity2.17E-03
33GO:0016829: lyase activity2.37E-03
34GO:0043621: protein self-association2.43E-03
35GO:0005524: ATP binding2.79E-03
36GO:0070330: aromatase activity2.82E-03
37GO:0002161: aminoacyl-tRNA editing activity2.82E-03
38GO:0004557: alpha-galactosidase activity2.82E-03
39GO:0052692: raffinose alpha-galactosidase activity2.82E-03
40GO:0070180: large ribosomal subunit rRNA binding2.82E-03
41GO:0000156: phosphorelay response regulator activity2.88E-03
42GO:0005089: Rho guanyl-nucleotide exchange factor activity2.94E-03
43GO:0004674: protein serine/threonine kinase activity3.12E-03
44GO:0005215: transporter activity3.36E-03
45GO:0005262: calcium channel activity3.84E-03
46GO:0010329: auxin efflux transmembrane transporter activity3.84E-03
47GO:0001872: (1->3)-beta-D-glucan binding4.11E-03
48GO:0015189: L-lysine transmembrane transporter activity4.11E-03
49GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity4.11E-03
50GO:0004072: aspartate kinase activity4.11E-03
51GO:0017172: cysteine dioxygenase activity4.11E-03
52GO:0015181: arginine transmembrane transporter activity4.11E-03
53GO:0047627: adenylylsulfatase activity4.11E-03
54GO:0043023: ribosomal large subunit binding4.11E-03
55GO:0035197: siRNA binding4.11E-03
56GO:0004845: uracil phosphoribosyltransferase activity5.55E-03
57GO:0004345: glucose-6-phosphate dehydrogenase activity5.55E-03
58GO:0080032: methyl jasmonate esterase activity5.55E-03
59GO:0043015: gamma-tubulin binding5.55E-03
60GO:0005253: anion channel activity5.55E-03
61GO:0042277: peptide binding5.55E-03
62GO:0046556: alpha-L-arabinofuranosidase activity5.55E-03
63GO:0015238: drug transmembrane transporter activity5.88E-03
64GO:0004372: glycine hydroxymethyltransferase activity7.15E-03
65GO:0018685: alkane 1-monooxygenase activity7.15E-03
66GO:0016773: phosphotransferase activity, alcohol group as acceptor7.15E-03
67GO:0004176: ATP-dependent peptidase activity7.36E-03
68GO:0016788: hydrolase activity, acting on ester bonds8.14E-03
69GO:0030570: pectate lyase activity8.82E-03
70GO:0030983: mismatched DNA binding8.88E-03
71GO:0004605: phosphatidate cytidylyltransferase activity8.88E-03
72GO:1990714: hydroxyproline O-galactosyltransferase activity8.88E-03
73GO:0004332: fructose-bisphosphate aldolase activity8.88E-03
74GO:0016208: AMP binding8.88E-03
75GO:0042578: phosphoric ester hydrolase activity8.88E-03
76GO:0008519: ammonium transmembrane transporter activity8.88E-03
77GO:0005247: voltage-gated chloride channel activity8.88E-03
78GO:0016301: kinase activity9.40E-03
79GO:0004124: cysteine synthase activity1.08E-02
80GO:0008195: phosphatidate phosphatase activity1.08E-02
81GO:0004849: uridine kinase activity1.08E-02
82GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.08E-02
83GO:0003730: mRNA 3'-UTR binding1.08E-02
84GO:0004656: procollagen-proline 4-dioxygenase activity1.08E-02
85GO:0008536: Ran GTPase binding1.22E-02
86GO:0019899: enzyme binding1.28E-02
87GO:0003872: 6-phosphofructokinase activity1.28E-02
88GO:0043022: ribosome binding1.49E-02
89GO:0016762: xyloglucan:xyloglucosyl transferase activity1.51E-02
90GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.71E-02
91GO:0005375: copper ion transmembrane transporter activity1.71E-02
92GO:0051015: actin filament binding1.72E-02
93GO:0016791: phosphatase activity1.83E-02
94GO:0016759: cellulose synthase activity1.83E-02
95GO:0008889: glycerophosphodiester phosphodiesterase activity1.95E-02
96GO:0003747: translation release factor activity1.95E-02
97GO:0016597: amino acid binding2.07E-02
98GO:0004650: polygalacturonase activity2.12E-02
99GO:0004713: protein tyrosine kinase activity2.45E-02
100GO:0016798: hydrolase activity, acting on glycosyl bonds2.59E-02
101GO:0008327: methyl-CpG binding2.72E-02
102GO:0004521: endoribonuclease activity3.00E-02
103GO:0004022: alcohol dehydrogenase (NAD) activity3.28E-02
104GO:0004565: beta-galactosidase activity3.28E-02
105GO:0015266: protein channel activity3.28E-02
106GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.28E-02
107GO:0004089: carbonate dehydratase activity3.28E-02
108GO:0031072: heat shock protein binding3.28E-02
109GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.31E-02
110GO:0008083: growth factor activity3.58E-02
111GO:0030170: pyridoxal phosphate binding3.59E-02
112GO:0004252: serine-type endopeptidase activity3.59E-02
113GO:0004672: protein kinase activity3.69E-02
114GO:0004190: aspartic-type endopeptidase activity3.88E-02
115GO:0052689: carboxylic ester hydrolase activity4.13E-02
116GO:0015297: antiporter activity4.44E-02
117GO:0005385: zinc ion transmembrane transporter activity4.51E-02
118GO:0005528: FK506 binding4.51E-02
119GO:0003714: transcription corepressor activity4.51E-02
120GO:0031418: L-ascorbic acid binding4.51E-02
121GO:0004185: serine-type carboxypeptidase activity4.67E-02
122GO:0015079: potassium ion transmembrane transporter activity4.84E-02
123GO:0008324: cation transmembrane transporter activity4.84E-02
124GO:0005345: purine nucleobase transmembrane transporter activity4.84E-02
125GO:0004871: signal transducer activity4.95E-02
126GO:0042803: protein homodimerization activity4.95E-02
127GO:0008017: microtubule binding4.96E-02
<
Gene type



Gene DE type