GO Enrichment Analysis of Co-expressed Genes with
AT5G53860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 2 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
| 3 | GO:0000455: enzyme-directed rRNA pseudouridine synthesis | 0.00E+00 |
| 4 | GO:0046460: neutral lipid biosynthetic process | 0.00E+00 |
| 5 | GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) | 0.00E+00 |
| 6 | GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 7 | GO:0042407: cristae formation | 0.00E+00 |
| 8 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 9 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 10 | GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 11 | GO:0010157: response to chlorate | 0.00E+00 |
| 12 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 13 | GO:0070125: mitochondrial translational elongation | 0.00E+00 |
| 14 | GO:0015843: methylammonium transport | 0.00E+00 |
| 15 | GO:0042793: transcription from plastid promoter | 3.29E-06 |
| 16 | GO:0009658: chloroplast organization | 3.71E-06 |
| 17 | GO:0045037: protein import into chloroplast stroma | 7.26E-05 |
| 18 | GO:0010020: chloroplast fission | 1.07E-04 |
| 19 | GO:0042372: phylloquinone biosynthetic process | 2.57E-04 |
| 20 | GO:0006400: tRNA modification | 3.33E-04 |
| 21 | GO:0043266: regulation of potassium ion transport | 3.73E-04 |
| 22 | GO:0010480: microsporocyte differentiation | 3.73E-04 |
| 23 | GO:0042371: vitamin K biosynthetic process | 3.73E-04 |
| 24 | GO:0043087: regulation of GTPase activity | 3.73E-04 |
| 25 | GO:2000021: regulation of ion homeostasis | 3.73E-04 |
| 26 | GO:0043609: regulation of carbon utilization | 3.73E-04 |
| 27 | GO:1902458: positive regulation of stomatal opening | 3.73E-04 |
| 28 | GO:0050801: ion homeostasis | 3.73E-04 |
| 29 | GO:0010028: xanthophyll cycle | 3.73E-04 |
| 30 | GO:0000023: maltose metabolic process | 3.73E-04 |
| 31 | GO:0006419: alanyl-tRNA aminoacylation | 3.73E-04 |
| 32 | GO:0006353: DNA-templated transcription, termination | 4.18E-04 |
| 33 | GO:0009704: de-etiolation | 4.18E-04 |
| 34 | GO:0006002: fructose 6-phosphate metabolic process | 5.11E-04 |
| 35 | GO:0000373: Group II intron splicing | 6.13E-04 |
| 36 | GO:0009828: plant-type cell wall loosening | 7.50E-04 |
| 37 | GO:0009629: response to gravity | 8.10E-04 |
| 38 | GO:0060359: response to ammonium ion | 8.10E-04 |
| 39 | GO:0048255: mRNA stabilization | 8.10E-04 |
| 40 | GO:0080005: photosystem stoichiometry adjustment | 8.10E-04 |
| 41 | GO:0006423: cysteinyl-tRNA aminoacylation | 8.10E-04 |
| 42 | GO:0007154: cell communication | 8.10E-04 |
| 43 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 8.10E-04 |
| 44 | GO:0042325: regulation of phosphorylation | 8.10E-04 |
| 45 | GO:0009220: pyrimidine ribonucleotide biosynthetic process | 8.10E-04 |
| 46 | GO:0042550: photosystem I stabilization | 8.10E-04 |
| 47 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 8.10E-04 |
| 48 | GO:0045036: protein targeting to chloroplast | 8.43E-04 |
| 49 | GO:0019419: sulfate reduction | 1.31E-03 |
| 50 | GO:0006000: fructose metabolic process | 1.31E-03 |
| 51 | GO:0001578: microtubule bundle formation | 1.31E-03 |
| 52 | GO:0043157: response to cation stress | 1.31E-03 |
| 53 | GO:0030261: chromosome condensation | 1.31E-03 |
| 54 | GO:0010447: response to acidic pH | 1.31E-03 |
| 55 | GO:0015696: ammonium transport | 1.89E-03 |
| 56 | GO:0046739: transport of virus in multicellular host | 1.89E-03 |
| 57 | GO:0006164: purine nucleotide biosynthetic process | 1.89E-03 |
| 58 | GO:0016556: mRNA modification | 1.89E-03 |
| 59 | GO:0043572: plastid fission | 1.89E-03 |
| 60 | GO:2001141: regulation of RNA biosynthetic process | 1.89E-03 |
| 61 | GO:0051639: actin filament network formation | 1.89E-03 |
| 62 | GO:0009409: response to cold | 2.18E-03 |
| 63 | GO:0051322: anaphase | 2.54E-03 |
| 64 | GO:0072488: ammonium transmembrane transport | 2.54E-03 |
| 65 | GO:0015846: polyamine transport | 2.54E-03 |
| 66 | GO:0044205: 'de novo' UMP biosynthetic process | 2.54E-03 |
| 67 | GO:0051764: actin crosslink formation | 2.54E-03 |
| 68 | GO:0006730: one-carbon metabolic process | 2.59E-03 |
| 69 | GO:0009793: embryo development ending in seed dormancy | 2.93E-03 |
| 70 | GO:0009904: chloroplast accumulation movement | 3.25E-03 |
| 71 | GO:0010236: plastoquinone biosynthetic process | 3.25E-03 |
| 72 | GO:0045038: protein import into chloroplast thylakoid membrane | 3.25E-03 |
| 73 | GO:0016123: xanthophyll biosynthetic process | 3.25E-03 |
| 74 | GO:0016554: cytidine to uridine editing | 4.02E-03 |
| 75 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 4.02E-03 |
| 76 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 4.02E-03 |
| 77 | GO:0009228: thiamine biosynthetic process | 4.02E-03 |
| 78 | GO:0009959: negative gravitropism | 4.02E-03 |
| 79 | GO:0006096: glycolytic process | 4.40E-03 |
| 80 | GO:0042026: protein refolding | 4.85E-03 |
| 81 | GO:0006458: 'de novo' protein folding | 4.85E-03 |
| 82 | GO:0034389: lipid particle organization | 4.85E-03 |
| 83 | GO:0009903: chloroplast avoidance movement | 4.85E-03 |
| 84 | GO:0030488: tRNA methylation | 4.85E-03 |
| 85 | GO:2000067: regulation of root morphogenesis | 4.85E-03 |
| 86 | GO:0009630: gravitropism | 5.12E-03 |
| 87 | GO:0048437: floral organ development | 5.73E-03 |
| 88 | GO:0010444: guard mother cell differentiation | 5.73E-03 |
| 89 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 5.73E-03 |
| 90 | GO:0015693: magnesium ion transport | 5.73E-03 |
| 91 | GO:0007050: cell cycle arrest | 5.73E-03 |
| 92 | GO:0009772: photosynthetic electron transport in photosystem II | 5.73E-03 |
| 93 | GO:0006508: proteolysis | 6.02E-03 |
| 94 | GO:0000910: cytokinesis | 6.55E-03 |
| 95 | GO:0048564: photosystem I assembly | 6.65E-03 |
| 96 | GO:0006402: mRNA catabolic process | 6.65E-03 |
| 97 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 6.65E-03 |
| 98 | GO:0042255: ribosome assembly | 6.65E-03 |
| 99 | GO:0019375: galactolipid biosynthetic process | 6.65E-03 |
| 100 | GO:0070413: trehalose metabolism in response to stress | 6.65E-03 |
| 101 | GO:2000070: regulation of response to water deprivation | 6.65E-03 |
| 102 | GO:0009231: riboflavin biosynthetic process | 6.65E-03 |
| 103 | GO:0071482: cellular response to light stimulus | 7.64E-03 |
| 104 | GO:0010497: plasmodesmata-mediated intercellular transport | 7.64E-03 |
| 105 | GO:0009657: plastid organization | 7.64E-03 |
| 106 | GO:0006526: arginine biosynthetic process | 7.64E-03 |
| 107 | GO:0032544: plastid translation | 7.64E-03 |
| 108 | GO:0006974: cellular response to DNA damage stimulus | 7.76E-03 |
| 109 | GO:0010411: xyloglucan metabolic process | 8.18E-03 |
| 110 | GO:0010206: photosystem II repair | 8.66E-03 |
| 111 | GO:0019432: triglyceride biosynthetic process | 8.66E-03 |
| 112 | GO:0098656: anion transmembrane transport | 8.66E-03 |
| 113 | GO:0043067: regulation of programmed cell death | 9.74E-03 |
| 114 | GO:0009098: leucine biosynthetic process | 9.74E-03 |
| 115 | GO:0042761: very long-chain fatty acid biosynthetic process | 9.74E-03 |
| 116 | GO:1900865: chloroplast RNA modification | 9.74E-03 |
| 117 | GO:0031425: chloroplast RNA processing | 9.74E-03 |
| 118 | GO:0006633: fatty acid biosynthetic process | 9.95E-03 |
| 119 | GO:0006499: N-terminal protein myristoylation | 1.00E-02 |
| 120 | GO:0000103: sulfate assimilation | 1.09E-02 |
| 121 | GO:0006949: syncytium formation | 1.09E-02 |
| 122 | GO:0009637: response to blue light | 1.15E-02 |
| 123 | GO:1903507: negative regulation of nucleic acid-templated transcription | 1.20E-02 |
| 124 | GO:0006352: DNA-templated transcription, initiation | 1.20E-02 |
| 125 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.20E-02 |
| 126 | GO:0048229: gametophyte development | 1.20E-02 |
| 127 | GO:0010015: root morphogenesis | 1.20E-02 |
| 128 | GO:0005983: starch catabolic process | 1.33E-02 |
| 129 | GO:2000012: regulation of auxin polar transport | 1.45E-02 |
| 130 | GO:0006108: malate metabolic process | 1.45E-02 |
| 131 | GO:0050826: response to freezing | 1.45E-02 |
| 132 | GO:0010075: regulation of meristem growth | 1.45E-02 |
| 133 | GO:0010114: response to red light | 1.49E-02 |
| 134 | GO:0042546: cell wall biogenesis | 1.55E-02 |
| 135 | GO:0010207: photosystem II assembly | 1.58E-02 |
| 136 | GO:0009934: regulation of meristem structural organization | 1.58E-02 |
| 137 | GO:0010039: response to iron ion | 1.71E-02 |
| 138 | GO:0090351: seedling development | 1.71E-02 |
| 139 | GO:0010025: wax biosynthetic process | 1.85E-02 |
| 140 | GO:0006071: glycerol metabolic process | 1.85E-02 |
| 141 | GO:0009664: plant-type cell wall organization | 1.87E-02 |
| 142 | GO:0051017: actin filament bundle assembly | 1.99E-02 |
| 143 | GO:0005992: trehalose biosynthetic process | 1.99E-02 |
| 144 | GO:0019344: cysteine biosynthetic process | 1.99E-02 |
| 145 | GO:0009116: nucleoside metabolic process | 1.99E-02 |
| 146 | GO:0019953: sexual reproduction | 2.14E-02 |
| 147 | GO:0061077: chaperone-mediated protein folding | 2.29E-02 |
| 148 | GO:0031408: oxylipin biosynthetic process | 2.29E-02 |
| 149 | GO:0016998: cell wall macromolecule catabolic process | 2.29E-02 |
| 150 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 2.44E-02 |
| 151 | GO:0007005: mitochondrion organization | 2.44E-02 |
| 152 | GO:0080092: regulation of pollen tube growth | 2.44E-02 |
| 153 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.60E-02 |
| 154 | GO:0010082: regulation of root meristem growth | 2.60E-02 |
| 155 | GO:0010091: trichome branching | 2.76E-02 |
| 156 | GO:0009306: protein secretion | 2.76E-02 |
| 157 | GO:0046777: protein autophosphorylation | 2.78E-02 |
| 158 | GO:0009624: response to nematode | 2.87E-02 |
| 159 | GO:0016117: carotenoid biosynthetic process | 2.92E-02 |
| 160 | GO:0000226: microtubule cytoskeleton organization | 3.08E-02 |
| 161 | GO:0008033: tRNA processing | 3.08E-02 |
| 162 | GO:0006606: protein import into nucleus | 3.08E-02 |
| 163 | GO:0048653: anther development | 3.08E-02 |
| 164 | GO:0010197: polar nucleus fusion | 3.25E-02 |
| 165 | GO:0055072: iron ion homeostasis | 3.60E-02 |
| 166 | GO:0000302: response to reactive oxygen species | 3.78E-02 |
| 167 | GO:0010583: response to cyclopentenone | 3.96E-02 |
| 168 | GO:0016032: viral process | 3.96E-02 |
| 169 | GO:0032502: developmental process | 3.96E-02 |
| 170 | GO:0030163: protein catabolic process | 4.14E-02 |
| 171 | GO:1901657: glycosyl compound metabolic process | 4.14E-02 |
| 172 | GO:0009790: embryo development | 4.18E-02 |
| 173 | GO:0016126: sterol biosynthetic process | 4.91E-02 |
| 174 | GO:0009911: positive regulation of flower development | 4.91E-02 |
| 175 | GO:0010027: thylakoid membrane organization | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005363: maltose transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 3 | GO:0004588: orotate phosphoribosyltransferase activity | 0.00E+00 |
| 4 | GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity | 0.00E+00 |
| 5 | GO:0004590: orotidine-5'-phosphate decarboxylase activity | 0.00E+00 |
| 6 | GO:0019808: polyamine binding | 0.00E+00 |
| 7 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 8 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 9 | GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity | 0.00E+00 |
| 10 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 11 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 12 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
| 13 | GO:0004358: glutamate N-acetyltransferase activity | 0.00E+00 |
| 14 | GO:0003937: IMP cyclohydrolase activity | 0.00E+00 |
| 15 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 4.81E-05 |
| 16 | GO:0003723: RNA binding | 2.07E-04 |
| 17 | GO:0004176: ATP-dependent peptidase activity | 2.29E-04 |
| 18 | GO:0004813: alanine-tRNA ligase activity | 3.73E-04 |
| 19 | GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity | 3.73E-04 |
| 20 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 3.73E-04 |
| 21 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 3.73E-04 |
| 22 | GO:0046481: digalactosyldiacylglycerol synthase activity | 3.73E-04 |
| 23 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 3.73E-04 |
| 24 | GO:0050139: nicotinate-N-glucosyltransferase activity | 3.73E-04 |
| 25 | GO:0046480: galactolipid galactosyltransferase activity | 3.73E-04 |
| 26 | GO:0005227: calcium activated cation channel activity | 3.73E-04 |
| 27 | GO:0008237: metallopeptidase activity | 8.09E-04 |
| 28 | GO:0004817: cysteine-tRNA ligase activity | 8.10E-04 |
| 29 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 8.10E-04 |
| 30 | GO:0009973: adenylyl-sulfate reductase activity | 8.10E-04 |
| 31 | GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity | 8.10E-04 |
| 32 | GO:0010291: carotene beta-ring hydroxylase activity | 8.10E-04 |
| 33 | GO:0003852: 2-isopropylmalate synthase activity | 8.10E-04 |
| 34 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 8.10E-04 |
| 35 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 8.10E-04 |
| 36 | GO:0033741: adenylyl-sulfate reductase (glutathione) activity | 8.10E-04 |
| 37 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 9.70E-04 |
| 38 | GO:0046524: sucrose-phosphate synthase activity | 1.31E-03 |
| 39 | GO:0070330: aromatase activity | 1.31E-03 |
| 40 | GO:0003913: DNA photolyase activity | 1.31E-03 |
| 41 | GO:0004557: alpha-galactosidase activity | 1.31E-03 |
| 42 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 1.31E-03 |
| 43 | GO:0052692: raffinose alpha-galactosidase activity | 1.31E-03 |
| 44 | GO:0000254: C-4 methylsterol oxidase activity | 1.89E-03 |
| 45 | GO:0019201: nucleotide kinase activity | 1.89E-03 |
| 46 | GO:0035250: UDP-galactosyltransferase activity | 1.89E-03 |
| 47 | GO:0016851: magnesium chelatase activity | 1.89E-03 |
| 48 | GO:0016656: monodehydroascorbate reductase (NADH) activity | 1.89E-03 |
| 49 | GO:0016987: sigma factor activity | 2.54E-03 |
| 50 | GO:0004659: prenyltransferase activity | 2.54E-03 |
| 51 | GO:0001053: plastid sigma factor activity | 2.54E-03 |
| 52 | GO:0043621: protein self-association | 2.69E-03 |
| 53 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 3.25E-03 |
| 54 | GO:0005275: amine transmembrane transporter activity | 3.25E-03 |
| 55 | GO:0018685: alkane 1-monooxygenase activity | 3.25E-03 |
| 56 | GO:0016208: AMP binding | 4.02E-03 |
| 57 | GO:0008519: ammonium transmembrane transporter activity | 4.02E-03 |
| 58 | GO:2001070: starch binding | 4.02E-03 |
| 59 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 4.79E-03 |
| 60 | GO:0004017: adenylate kinase activity | 4.85E-03 |
| 61 | GO:0030060: L-malate dehydrogenase activity | 4.85E-03 |
| 62 | GO:0004144: diacylglycerol O-acyltransferase activity | 4.85E-03 |
| 63 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 4.85E-03 |
| 64 | GO:0008195: phosphatidate phosphatase activity | 4.85E-03 |
| 65 | GO:0009881: photoreceptor activity | 5.73E-03 |
| 66 | GO:0003872: 6-phosphofructokinase activity | 5.73E-03 |
| 67 | GO:0016597: amino acid binding | 6.55E-03 |
| 68 | GO:0005525: GTP binding | 6.55E-03 |
| 69 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 8.18E-03 |
| 70 | GO:0042803: protein homodimerization activity | 9.10E-03 |
| 71 | GO:0005096: GTPase activator activity | 9.54E-03 |
| 72 | GO:0004222: metalloendopeptidase activity | 1.00E-02 |
| 73 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.05E-02 |
| 74 | GO:0004805: trehalose-phosphatase activity | 1.09E-02 |
| 75 | GO:0003746: translation elongation factor activity | 1.15E-02 |
| 76 | GO:0003924: GTPase activity | 1.17E-02 |
| 77 | GO:0008559: xenobiotic-transporting ATPase activity | 1.20E-02 |
| 78 | GO:0044183: protein binding involved in protein folding | 1.20E-02 |
| 79 | GO:0009055: electron carrier activity | 1.30E-02 |
| 80 | GO:0004519: endonuclease activity | 1.32E-02 |
| 81 | GO:0000976: transcription regulatory region sequence-specific DNA binding | 1.33E-02 |
| 82 | GO:0000049: tRNA binding | 1.33E-02 |
| 83 | GO:0005315: inorganic phosphate transmembrane transporter activity | 1.45E-02 |
| 84 | GO:0004089: carbonate dehydratase activity | 1.45E-02 |
| 85 | GO:0015095: magnesium ion transmembrane transporter activity | 1.45E-02 |
| 86 | GO:0019888: protein phosphatase regulator activity | 1.45E-02 |
| 87 | GO:0009982: pseudouridine synthase activity | 1.45E-02 |
| 88 | GO:0008266: poly(U) RNA binding | 1.58E-02 |
| 89 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 1.85E-02 |
| 90 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 1.85E-02 |
| 91 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 1.85E-02 |
| 92 | GO:0003714: transcription corepressor activity | 1.99E-02 |
| 93 | GO:0005345: purine nucleobase transmembrane transporter activity | 2.14E-02 |
| 94 | GO:0033612: receptor serine/threonine kinase binding | 2.29E-02 |
| 95 | GO:0003964: RNA-directed DNA polymerase activity | 2.29E-02 |
| 96 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 2.29E-02 |
| 97 | GO:0008408: 3'-5' exonuclease activity | 2.29E-02 |
| 98 | GO:0050660: flavin adenine dinucleotide binding | 2.35E-02 |
| 99 | GO:0003727: single-stranded RNA binding | 2.76E-02 |
| 100 | GO:0008514: organic anion transmembrane transporter activity | 2.76E-02 |
| 101 | GO:0051082: unfolded protein binding | 2.87E-02 |
| 102 | GO:0008536: Ran GTPase binding | 3.25E-02 |
| 103 | GO:0004527: exonuclease activity | 3.25E-02 |
| 104 | GO:0010181: FMN binding | 3.42E-02 |
| 105 | GO:0016829: lyase activity | 3.88E-02 |
| 106 | GO:0004252: serine-type endopeptidase activity | 3.98E-02 |
| 107 | GO:0000156: phosphorelay response regulator activity | 4.14E-02 |
| 108 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 4.14E-02 |
| 109 | GO:0051015: actin filament binding | 4.14E-02 |
| 110 | GO:0008565: protein transporter activity | 4.28E-02 |
| 111 | GO:0016791: phosphatase activity | 4.33E-02 |
| 112 | GO:0016491: oxidoreductase activity | 4.43E-02 |