Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G53020

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009606: tropism0.00E+00
2GO:1901698: response to nitrogen compound0.00E+00
3GO:1903224: regulation of endodermal cell differentiation0.00E+00
4GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
7GO:0010480: microsporocyte differentiation0.00E+00
8GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
9GO:0097164: ammonium ion metabolic process0.00E+00
10GO:0070455: positive regulation of heme biosynthetic process0.00E+00
11GO:0045184: establishment of protein localization0.00E+00
12GO:0071311: cellular response to acetate0.00E+00
13GO:0015843: methylammonium transport0.00E+00
14GO:0031222: arabinan catabolic process0.00E+00
15GO:0070979: protein K11-linked ubiquitination0.00E+00
16GO:0071260: cellular response to mechanical stimulus0.00E+00
17GO:0061157: mRNA destabilization0.00E+00
18GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
19GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
20GO:0009733: response to auxin2.44E-11
21GO:0046620: regulation of organ growth2.08E-10
22GO:0009734: auxin-activated signaling pathway1.29E-09
23GO:0009926: auxin polar transport3.23E-07
24GO:0040008: regulation of growth2.97E-06
25GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.88E-05
26GO:0007389: pattern specification process9.62E-05
27GO:0000373: Group II intron splicing1.28E-04
28GO:2000038: regulation of stomatal complex development2.57E-04
29GO:0046656: folic acid biosynthetic process2.57E-04
30GO:0009767: photosynthetic electron transport chain3.71E-04
31GO:0009904: chloroplast accumulation movement3.86E-04
32GO:0032876: negative regulation of DNA endoreduplication3.86E-04
33GO:0010252: auxin homeostasis4.31E-04
34GO:0042793: transcription from plastid promoter5.37E-04
35GO:0046654: tetrahydrofolate biosynthetic process7.09E-04
36GO:0009903: chloroplast avoidance movement7.09E-04
37GO:0090558: plant epidermis development7.34E-04
38GO:0046520: sphingoid biosynthetic process7.34E-04
39GO:0035987: endodermal cell differentiation7.34E-04
40GO:0043609: regulation of carbon utilization7.34E-04
41GO:0006436: tryptophanyl-tRNA aminoacylation7.34E-04
42GO:0000066: mitochondrial ornithine transport7.34E-04
43GO:0034757: negative regulation of iron ion transport7.34E-04
44GO:0042659: regulation of cell fate specification7.34E-04
45GO:0048437: floral organ development9.05E-04
46GO:0000160: phosphorelay signal transduction system9.28E-04
47GO:0006002: fructose 6-phosphate metabolic process1.37E-03
48GO:0070981: L-asparagine biosynthetic process1.58E-03
49GO:0010271: regulation of chlorophyll catabolic process1.58E-03
50GO:0010569: regulation of double-strand break repair via homologous recombination1.58E-03
51GO:0018026: peptidyl-lysine monomethylation1.58E-03
52GO:0071497: cellular response to freezing1.58E-03
53GO:0009786: regulation of asymmetric cell division1.58E-03
54GO:0031648: protein destabilization1.58E-03
55GO:0006529: asparagine biosynthetic process1.58E-03
56GO:2000123: positive regulation of stomatal complex development1.58E-03
57GO:0006783: heme biosynthetic process1.64E-03
58GO:0009638: phototropism1.95E-03
59GO:0032502: developmental process2.31E-03
60GO:0010583: response to cyclopentenone2.31E-03
61GO:0030154: cell differentiation2.39E-03
62GO:0006000: fructose metabolic process2.62E-03
63GO:0071230: cellular response to amino acid stimulus2.62E-03
64GO:0031145: anaphase-promoting complex-dependent catabolic process2.62E-03
65GO:0051604: protein maturation2.62E-03
66GO:0001578: microtubule bundle formation2.62E-03
67GO:0006760: folic acid-containing compound metabolic process2.62E-03
68GO:0071705: nitrogen compound transport2.62E-03
69GO:0016050: vesicle organization2.62E-03
70GO:0031022: nuclear migration along microfilament2.62E-03
71GO:0051127: positive regulation of actin nucleation2.62E-03
72GO:0090708: specification of plant organ axis polarity2.62E-03
73GO:0080117: secondary growth2.62E-03
74GO:0006816: calcium ion transport2.64E-03
75GO:0048229: gametophyte development2.64E-03
76GO:0009736: cytokinin-activated signaling pathway2.89E-03
77GO:2000012: regulation of auxin polar transport3.45E-03
78GO:0010075: regulation of meristem growth3.45E-03
79GO:0044211: CTP salvage3.81E-03
80GO:0015696: ammonium transport3.81E-03
81GO:0046739: transport of virus in multicellular host3.81E-03
82GO:2000904: regulation of starch metabolic process3.81E-03
83GO:0051289: protein homotetramerization3.81E-03
84GO:0043572: plastid fission3.81E-03
85GO:1902476: chloride transmembrane transport3.81E-03
86GO:0051513: regulation of monopolar cell growth3.81E-03
87GO:0007231: osmosensory signaling pathway3.81E-03
88GO:0030071: regulation of mitotic metaphase/anaphase transition3.81E-03
89GO:0051639: actin filament network formation3.81E-03
90GO:0009800: cinnamic acid biosynthetic process3.81E-03
91GO:0033014: tetrapyrrole biosynthetic process3.81E-03
92GO:0009934: regulation of meristem structural organization3.90E-03
93GO:0090351: seedling development4.38E-03
94GO:0072488: ammonium transmembrane transport5.15E-03
95GO:0022622: root system development5.15E-03
96GO:0044205: 'de novo' UMP biosynthetic process5.15E-03
97GO:0044206: UMP salvage5.15E-03
98GO:0006346: methylation-dependent chromatin silencing5.15E-03
99GO:1901141: regulation of lignin biosynthetic process5.15E-03
100GO:0051764: actin crosslink formation5.15E-03
101GO:0051322: anaphase5.15E-03
102GO:0071249: cellular response to nitrate5.15E-03
103GO:0030104: water homeostasis5.15E-03
104GO:0033500: carbohydrate homeostasis5.15E-03
105GO:0005992: trehalose biosynthetic process5.43E-03
106GO:0009742: brassinosteroid mediated signaling pathway5.44E-03
107GO:0006468: protein phosphorylation5.56E-03
108GO:0009658: chloroplast organization6.52E-03
109GO:0006306: DNA methylation6.60E-03
110GO:0006544: glycine metabolic process6.62E-03
111GO:1902183: regulation of shoot apical meristem development6.62E-03
112GO:0016123: xanthophyll biosynthetic process6.62E-03
113GO:0010438: cellular response to sulfur starvation6.62E-03
114GO:0010158: abaxial cell fate specification6.62E-03
115GO:0030308: negative regulation of cell growth6.62E-03
116GO:0010375: stomatal complex patterning6.62E-03
117GO:0009416: response to light stimulus6.70E-03
118GO:0010082: regulation of root meristem growth7.91E-03
119GO:0048831: regulation of shoot system development8.23E-03
120GO:0010315: auxin efflux8.23E-03
121GO:0006559: L-phenylalanine catabolic process8.23E-03
122GO:0006206: pyrimidine nucleobase metabolic process8.23E-03
123GO:0018258: protein O-linked glycosylation via hydroxyproline8.23E-03
124GO:0006563: L-serine metabolic process8.23E-03
125GO:0010405: arabinogalactan protein metabolic process8.23E-03
126GO:0009959: negative gravitropism8.23E-03
127GO:0006655: phosphatidylglycerol biosynthetic process8.23E-03
128GO:0070417: cellular response to cold9.35E-03
129GO:0009942: longitudinal axis specification9.97E-03
130GO:0048509: regulation of meristem development9.97E-03
131GO:0030488: tRNA methylation9.97E-03
132GO:0080086: stamen filament development9.97E-03
133GO:2000037: regulation of stomatal complex patterning9.97E-03
134GO:2000067: regulation of root morphogenesis9.97E-03
135GO:0071470: cellular response to osmotic stress9.97E-03
136GO:0010087: phloem or xylem histogenesis1.01E-02
137GO:0048653: anther development1.01E-02
138GO:0009958: positive gravitropism1.09E-02
139GO:0010050: vegetative phase change1.18E-02
140GO:0030307: positive regulation of cell growth1.18E-02
141GO:0009396: folic acid-containing compound biosynthetic process1.18E-02
142GO:0007018: microtubule-based movement1.18E-02
143GO:0032880: regulation of protein localization1.18E-02
144GO:0010161: red light signaling pathway1.18E-02
145GO:0009610: response to symbiotic fungus1.18E-02
146GO:0007050: cell cycle arrest1.18E-02
147GO:0006821: chloride transport1.18E-02
148GO:0071555: cell wall organization1.23E-02
149GO:0009739: response to gibberellin1.36E-02
150GO:0009850: auxin metabolic process1.38E-02
151GO:0009787: regulation of abscisic acid-activated signaling pathway1.38E-02
152GO:0009704: de-etiolation1.38E-02
153GO:0032875: regulation of DNA endoreduplication1.38E-02
154GO:0042255: ribosome assembly1.38E-02
155GO:0048766: root hair initiation1.38E-02
156GO:0055075: potassium ion homeostasis1.38E-02
157GO:0000105: histidine biosynthetic process1.38E-02
158GO:0010439: regulation of glucosinolate biosynthetic process1.38E-02
159GO:0001522: pseudouridine synthesis1.38E-02
160GO:0031047: gene silencing by RNA1.45E-02
161GO:0009827: plant-type cell wall modification1.59E-02
162GO:0010100: negative regulation of photomorphogenesis1.59E-02
163GO:0006526: arginine biosynthetic process1.59E-02
164GO:0010497: plasmodesmata-mediated intercellular transport1.59E-02
165GO:0032544: plastid translation1.59E-02
166GO:0010099: regulation of photomorphogenesis1.59E-02
167GO:0009828: plant-type cell wall loosening1.64E-02
168GO:2000024: regulation of leaf development1.80E-02
169GO:0000902: cell morphogenesis1.80E-02
170GO:0051865: protein autoubiquitination1.80E-02
171GO:0009051: pentose-phosphate shunt, oxidative branch1.80E-02
172GO:0009751: response to salicylic acid1.82E-02
173GO:0009740: gibberellic acid mediated signaling pathway1.93E-02
174GO:0010027: thylakoid membrane organization1.97E-02
175GO:0048364: root development2.01E-02
176GO:0031425: chloroplast RNA processing2.03E-02
177GO:0042761: very long-chain fatty acid biosynthetic process2.03E-02
178GO:2000280: regulation of root development2.03E-02
179GO:0035999: tetrahydrofolate interconversion2.03E-02
180GO:0010029: regulation of seed germination2.08E-02
181GO:0006535: cysteine biosynthetic process from serine2.27E-02
182GO:0048829: root cap development2.27E-02
183GO:0009641: shade avoidance2.27E-02
184GO:0006949: syncytium formation2.27E-02
185GO:0009299: mRNA transcription2.27E-02
186GO:0010411: xyloglucan metabolic process2.32E-02
187GO:0015995: chlorophyll biosynthetic process2.32E-02
188GO:0009773: photosynthetic electron transport in photosystem I2.52E-02
189GO:0009682: induced systemic resistance2.52E-02
190GO:0010015: root morphogenesis2.52E-02
191GO:0007275: multicellular organism development2.60E-02
192GO:0010311: lateral root formation2.70E-02
193GO:0009723: response to ethylene2.75E-02
194GO:0016024: CDP-diacylglycerol biosynthetic process2.77E-02
195GO:0045037: protein import into chloroplast stroma2.77E-02
196GO:0010582: floral meristem determinacy2.77E-02
197GO:0008361: regulation of cell size2.77E-02
198GO:0015706: nitrate transport2.77E-02
199GO:0006357: regulation of transcription from RNA polymerase II promoter3.00E-02
200GO:0010628: positive regulation of gene expression3.04E-02
201GO:0006006: glucose metabolic process3.04E-02
202GO:0009785: blue light signaling pathway3.04E-02
203GO:0009691: cytokinin biosynthetic process3.04E-02
204GO:0030036: actin cytoskeleton organization3.04E-02
205GO:0009725: response to hormone3.04E-02
206GO:0080167: response to karrikin3.05E-02
207GO:0005975: carbohydrate metabolic process3.14E-02
208GO:0010143: cutin biosynthetic process3.31E-02
209GO:0006541: glutamine metabolic process3.31E-02
210GO:0010020: chloroplast fission3.31E-02
211GO:0010207: photosystem II assembly3.31E-02
212GO:0010167: response to nitrate3.59E-02
213GO:0070588: calcium ion transmembrane transport3.59E-02
214GO:0006839: mitochondrial transport3.71E-02
215GO:0006897: endocytosis3.87E-02
216GO:0009833: plant-type primary cell wall biogenesis3.88E-02
217GO:0006071: glycerol metabolic process3.88E-02
218GO:0006833: water transport3.88E-02
219GO:0051017: actin filament bundle assembly4.18E-02
220GO:0010187: negative regulation of seed germination4.18E-02
221GO:0019344: cysteine biosynthetic process4.18E-02
222GO:0009944: polarity specification of adaxial/abaxial axis4.18E-02
223GO:0009640: photomorphogenesis4.20E-02
224GO:0016310: phosphorylation4.34E-02
225GO:0042546: cell wall biogenesis4.36E-02
226GO:0006418: tRNA aminoacylation for protein translation4.48E-02
227GO:0006874: cellular calcium ion homeostasis4.48E-02
228GO:0006825: copper ion transport4.48E-02
229GO:0051302: regulation of cell division4.48E-02
230GO:0016998: cell wall macromolecule catabolic process4.79E-02
231GO:0007166: cell surface receptor signaling pathway4.84E-02
RankGO TermAdjusted P value
1GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
2GO:0015276: ligand-gated ion channel activity0.00E+00
3GO:0004056: argininosuccinate lyase activity0.00E+00
4GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
5GO:0070009: serine-type aminopeptidase activity0.00E+00
6GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
7GO:0009672: auxin:proton symporter activity1.65E-04
8GO:0010329: auxin efflux transmembrane transporter activity3.71E-04
9GO:0043621: protein self-association4.07E-04
10GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity7.34E-04
11GO:0008066: glutamate receptor activity7.34E-04
12GO:0004156: dihydropteroate synthase activity7.34E-04
13GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity7.34E-04
14GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.34E-04
15GO:0005290: L-histidine transmembrane transporter activity7.34E-04
16GO:0004008: copper-exporting ATPase activity7.34E-04
17GO:0004071: aspartate-ammonia ligase activity7.34E-04
18GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity7.34E-04
19GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.34E-04
20GO:0004830: tryptophan-tRNA ligase activity7.34E-04
21GO:0052381: tRNA dimethylallyltransferase activity7.34E-04
22GO:0010313: phytochrome binding7.34E-04
23GO:0004400: histidinol-phosphate transaminase activity7.34E-04
24GO:0000170: sphingosine hydroxylase activity7.34E-04
25GO:0050139: nicotinate-N-glucosyltransferase activity7.34E-04
26GO:0003727: single-stranded RNA binding1.20E-03
27GO:0004150: dihydroneopterin aldolase activity1.58E-03
28GO:0008805: carbon-monoxide oxygenase activity1.58E-03
29GO:0042284: sphingolipid delta-4 desaturase activity1.58E-03
30GO:0000064: L-ornithine transmembrane transporter activity1.58E-03
31GO:0015929: hexosaminidase activity1.58E-03
32GO:0004563: beta-N-acetylhexosaminidase activity1.58E-03
33GO:0050017: L-3-cyanoalanine synthase activity1.58E-03
34GO:0009884: cytokinin receptor activity1.58E-03
35GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.58E-03
36GO:0043425: bHLH transcription factor binding1.58E-03
37GO:0102083: 7,8-dihydromonapterin aldolase activity1.58E-03
38GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.58E-03
39GO:0004805: trehalose-phosphatase activity2.28E-03
40GO:0000156: phosphorelay response regulator activity2.51E-03
41GO:0052722: fatty acid in-chain hydroxylase activity2.62E-03
42GO:0017150: tRNA dihydrouridine synthase activity2.62E-03
43GO:0045548: phenylalanine ammonia-lyase activity2.62E-03
44GO:0005034: osmosensor activity2.62E-03
45GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity2.62E-03
46GO:0070180: large ribosomal subunit rRNA binding2.62E-03
47GO:0070330: aromatase activity2.62E-03
48GO:0005089: Rho guanyl-nucleotide exchange factor activity2.64E-03
49GO:0005262: calcium channel activity3.45E-03
50GO:0009982: pseudouridine synthase activity3.45E-03
51GO:0015181: arginine transmembrane transporter activity3.81E-03
52GO:0001872: (1->3)-beta-D-glucan binding3.81E-03
53GO:0015189: L-lysine transmembrane transporter activity3.81E-03
54GO:0004650: polygalacturonase activity4.33E-03
55GO:0005253: anion channel activity5.15E-03
56GO:0019199: transmembrane receptor protein kinase activity5.15E-03
57GO:0043495: protein anchor5.15E-03
58GO:0046556: alpha-L-arabinofuranosidase activity5.15E-03
59GO:0016279: protein-lysine N-methyltransferase activity5.15E-03
60GO:0004845: uracil phosphoribosyltransferase activity5.15E-03
61GO:0004345: glucose-6-phosphate dehydrogenase activity5.15E-03
62GO:0016301: kinase activity5.85E-03
63GO:0033612: receptor serine/threonine kinase binding6.60E-03
64GO:0004523: RNA-DNA hybrid ribonuclease activity6.62E-03
65GO:0018685: alkane 1-monooxygenase activity6.62E-03
66GO:0016773: phosphotransferase activity, alcohol group as acceptor6.62E-03
67GO:0008725: DNA-3-methyladenine glycosylase activity6.62E-03
68GO:0004372: glycine hydroxymethyltransferase activity6.62E-03
69GO:0008519: ammonium transmembrane transporter activity8.23E-03
70GO:0005247: voltage-gated chloride channel activity8.23E-03
71GO:2001070: starch binding8.23E-03
72GO:0004605: phosphatidate cytidylyltransferase activity8.23E-03
73GO:1990714: hydroxyproline O-galactosyltransferase activity8.23E-03
74GO:0004674: protein serine/threonine kinase activity8.79E-03
75GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity9.97E-03
76GO:0004656: procollagen-proline 4-dioxygenase activity9.97E-03
77GO:0019900: kinase binding9.97E-03
78GO:0004124: cysteine synthase activity9.97E-03
79GO:0008195: phosphatidate phosphatase activity9.97E-03
80GO:0004849: uridine kinase activity9.97E-03
81GO:0019899: enzyme binding1.18E-02
82GO:0003872: 6-phosphofructokinase activity1.18E-02
83GO:0010181: FMN binding1.18E-02
84GO:0004672: protein kinase activity1.28E-02
85GO:0005515: protein binding1.28E-02
86GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting1.30E-02
87GO:0016762: xyloglucan:xyloglucosyl transferase activity1.35E-02
88GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.57E-02
89GO:0008173: RNA methyltransferase activity1.59E-02
90GO:0005375: copper ion transmembrane transporter activity1.59E-02
91GO:0016759: cellulose synthase activity1.64E-02
92GO:0008889: glycerophosphodiester phosphodiesterase activity1.80E-02
93GO:0008168: methyltransferase activity2.10E-02
94GO:0004673: protein histidine kinase activity2.27E-02
95GO:0016798: hydrolase activity, acting on glycosyl bonds2.32E-02
96GO:0008327: methyl-CpG binding2.52E-02
97GO:0000976: transcription regulatory region sequence-specific DNA binding2.77E-02
98GO:0044212: transcription regulatory region DNA binding2.96E-02
99GO:0004022: alcohol dehydrogenase (NAD) activity3.04E-02
100GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.04E-02
101GO:0004089: carbonate dehydratase activity3.04E-02
102GO:0031072: heat shock protein binding3.04E-02
103GO:0000155: phosphorelay sensor kinase activity3.04E-02
104GO:0016829: lyase activity3.04E-02
105GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.26E-02
106GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.31E-02
107GO:0008083: growth factor activity3.31E-02
108GO:0004970: ionotropic glutamate receptor activity3.59E-02
109GO:0005217: intracellular ligand-gated ion channel activity3.59E-02
110GO:0005215: transporter activity3.62E-02
111GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.77E-02
112GO:0031418: L-ascorbic acid binding4.18E-02
113GO:0004871: signal transducer activity4.24E-02
114GO:0008017: microtubule binding4.35E-02
115GO:0005345: purine nucleobase transmembrane transporter activity4.48E-02
116GO:0043424: protein histidine kinase binding4.48E-02
117GO:0035251: UDP-glucosyltransferase activity4.79E-02
118GO:0004176: ATP-dependent peptidase activity4.79E-02
119GO:0004707: MAP kinase activity4.79E-02
120GO:0003964: RNA-directed DNA polymerase activity4.79E-02
121GO:0008408: 3'-5' exonuclease activity4.79E-02
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Gene type



Gene DE type