Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G52280

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070979: protein K11-linked ubiquitination0.00E+00
2GO:0071260: cellular response to mechanical stimulus0.00E+00
3GO:0043488: regulation of mRNA stability0.00E+00
4GO:0061157: mRNA destabilization0.00E+00
5GO:0090706: specification of plant organ position0.00E+00
6GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
7GO:0007037: vacuolar phosphate transport0.00E+00
8GO:0007638: mechanosensory behavior0.00E+00
9GO:0031116: positive regulation of microtubule polymerization0.00E+00
10GO:0010068: protoderm histogenesis0.00E+00
11GO:0031129: inductive cell-cell signaling0.00E+00
12GO:0007172: signal complex assembly0.00E+00
13GO:0010412: mannan metabolic process0.00E+00
14GO:0071311: cellular response to acetate0.00E+00
15GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.40E-05
16GO:0051322: anaphase8.19E-05
17GO:0009733: response to auxin1.11E-04
18GO:0010158: abaxial cell fate specification1.28E-04
19GO:0009658: chloroplast organization2.08E-04
20GO:0006177: GMP biosynthetic process3.65E-04
21GO:0010450: inflorescence meristem growth3.65E-04
22GO:0051418: microtubule nucleation by microtubule organizing center3.65E-04
23GO:0010482: regulation of epidermal cell division3.65E-04
24GO:1902265: abscisic acid homeostasis3.65E-04
25GO:0071028: nuclear mRNA surveillance3.65E-04
26GO:0006264: mitochondrial DNA replication3.65E-04
27GO:0033259: plastid DNA replication3.65E-04
28GO:0045488: pectin metabolic process3.65E-04
29GO:0034080: CENP-A containing nucleosome assembly3.65E-04
30GO:0042255: ribosome assembly4.05E-04
31GO:0040008: regulation of growth4.25E-04
32GO:0009638: phototropism7.02E-04
33GO:0071051: polyadenylation-dependent snoRNA 3'-end processing7.94E-04
34GO:0034475: U4 snRNA 3'-end processing7.94E-04
35GO:0033566: gamma-tubulin complex localization7.94E-04
36GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole7.94E-04
37GO:1900871: chloroplast mRNA modification7.94E-04
38GO:2000039: regulation of trichome morphogenesis7.94E-04
39GO:0007154: cell communication7.94E-04
40GO:0006423: cysteinyl-tRNA aminoacylation7.94E-04
41GO:1900033: negative regulation of trichome patterning7.94E-04
42GO:0042814: monopolar cell growth7.94E-04
43GO:0031125: rRNA 3'-end processing7.94E-04
44GO:0006816: calcium ion transport9.42E-04
45GO:0016075: rRNA catabolic process1.29E-03
46GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.29E-03
47GO:0031022: nuclear migration along microfilament1.29E-03
48GO:0051127: positive regulation of actin nucleation1.29E-03
49GO:0071230: cellular response to amino acid stimulus1.29E-03
50GO:0031145: anaphase-promoting complex-dependent catabolic process1.29E-03
51GO:0043693: monoterpene biosynthetic process1.29E-03
52GO:0045604: regulation of epidermal cell differentiation1.29E-03
53GO:0009150: purine ribonucleotide metabolic process1.29E-03
54GO:0001578: microtubule bundle formation1.29E-03
55GO:0045493: xylan catabolic process1.29E-03
56GO:0045165: cell fate commitment1.29E-03
57GO:0007052: mitotic spindle organization1.29E-03
58GO:0009734: auxin-activated signaling pathway1.45E-03
59GO:0007231: osmosensory signaling pathway1.85E-03
60GO:0030071: regulation of mitotic metaphase/anaphase transition1.85E-03
61GO:0051639: actin filament network formation1.85E-03
62GO:0044211: CTP salvage1.85E-03
63GO:0009226: nucleotide-sugar biosynthetic process1.85E-03
64GO:0090307: mitotic spindle assembly1.85E-03
65GO:0048645: animal organ formation1.85E-03
66GO:0048530: fruit morphogenesis1.85E-03
67GO:0006164: purine nucleotide biosynthetic process1.85E-03
68GO:0032981: mitochondrial respiratory chain complex I assembly1.85E-03
69GO:2000904: regulation of starch metabolic process1.85E-03
70GO:0006168: adenine salvage1.85E-03
71GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center1.85E-03
72GO:0034508: centromere complex assembly1.85E-03
73GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.85E-03
74GO:0006166: purine ribonucleoside salvage1.85E-03
75GO:0005992: trehalose biosynthetic process1.89E-03
76GO:0051764: actin crosslink formation2.49E-03
77GO:0046355: mannan catabolic process2.49E-03
78GO:0015846: polyamine transport2.49E-03
79GO:0033500: carbohydrate homeostasis2.49E-03
80GO:0022622: root system development2.49E-03
81GO:0007020: microtubule nucleation2.49E-03
82GO:0044206: UMP salvage2.49E-03
83GO:0009902: chloroplast relocation2.49E-03
84GO:0009165: nucleotide biosynthetic process2.49E-03
85GO:0048629: trichome patterning2.49E-03
86GO:0044209: AMP salvage3.18E-03
87GO:0032876: negative regulation of DNA endoreduplication3.18E-03
88GO:0046785: microtubule polymerization3.18E-03
89GO:0006544: glycine metabolic process3.18E-03
90GO:1902183: regulation of shoot apical meristem development3.18E-03
91GO:0000226: microtubule cytoskeleton organization3.49E-03
92GO:0010087: phloem or xylem histogenesis3.49E-03
93GO:0009958: positive gravitropism3.76E-03
94GO:0009959: negative gravitropism3.93E-03
95GO:0006139: nucleobase-containing compound metabolic process3.93E-03
96GO:0006206: pyrimidine nucleobase metabolic process3.93E-03
97GO:0000741: karyogamy3.93E-03
98GO:0006563: L-serine metabolic process3.93E-03
99GO:0042372: phylloquinone biosynthetic process4.74E-03
100GO:0009082: branched-chain amino acid biosynthetic process4.74E-03
101GO:2000033: regulation of seed dormancy process4.74E-03
102GO:0009099: valine biosynthetic process4.74E-03
103GO:0009903: chloroplast avoidance movement4.74E-03
104GO:0048444: floral organ morphogenesis4.74E-03
105GO:0080086: stamen filament development4.74E-03
106GO:0032502: developmental process4.96E-03
107GO:0048528: post-embryonic root development5.60E-03
108GO:0010050: vegetative phase change5.60E-03
109GO:0050829: defense response to Gram-negative bacterium5.60E-03
110GO:0032880: regulation of protein localization5.60E-03
111GO:0010161: red light signaling pathway5.60E-03
112GO:0000910: cytokinesis6.35E-03
113GO:0033386: geranylgeranyl diphosphate biosynthetic process6.51E-03
114GO:0009787: regulation of abscisic acid-activated signaling pathway6.51E-03
115GO:0009850: auxin metabolic process6.51E-03
116GO:0046620: regulation of organ growth6.51E-03
117GO:0006353: DNA-templated transcription, termination6.51E-03
118GO:0010078: maintenance of root meristem identity6.51E-03
119GO:0009704: de-etiolation6.51E-03
120GO:0070413: trehalose metabolism in response to stress6.51E-03
121GO:0032875: regulation of DNA endoreduplication6.51E-03
122GO:0010029: regulation of seed germination7.11E-03
123GO:0010099: regulation of photomorphogenesis7.47E-03
124GO:0006002: fructose 6-phosphate metabolic process7.47E-03
125GO:0009827: plant-type cell wall modification7.47E-03
126GO:0009097: isoleucine biosynthetic process7.47E-03
127GO:0010100: negative regulation of photomorphogenesis7.47E-03
128GO:0006997: nucleus organization7.47E-03
129GO:0043562: cellular response to nitrogen levels7.47E-03
130GO:0010093: specification of floral organ identity7.47E-03
131GO:0009627: systemic acquired resistance7.51E-03
132GO:0009051: pentose-phosphate shunt, oxidative branch8.47E-03
133GO:0045337: farnesyl diphosphate biosynthetic process8.47E-03
134GO:2000024: regulation of leaf development8.47E-03
135GO:0033384: geranyl diphosphate biosynthetic process8.47E-03
136GO:0006783: heme biosynthetic process8.47E-03
137GO:0000373: Group II intron splicing8.47E-03
138GO:0006189: 'de novo' IMP biosynthetic process8.47E-03
139GO:0000902: cell morphogenesis8.47E-03
140GO:0071555: cell wall organization9.23E-03
141GO:0042761: very long-chain fatty acid biosynthetic process9.53E-03
142GO:0009098: leucine biosynthetic process9.53E-03
143GO:0010018: far-red light signaling pathway9.53E-03
144GO:1900865: chloroplast RNA modification9.53E-03
145GO:0048527: lateral root development1.02E-02
146GO:0010162: seed dormancy process1.06E-02
147GO:0009299: mRNA transcription1.06E-02
148GO:0006535: cysteine biosynthetic process from serine1.06E-02
149GO:0007623: circadian rhythm1.08E-02
150GO:0030154: cell differentiation1.09E-02
151GO:0009684: indoleacetic acid biosynthetic process1.18E-02
152GO:0009773: photosynthetic electron transport in photosystem I1.18E-02
153GO:1903507: negative regulation of nucleic acid-templated transcription1.18E-02
154GO:0006415: translational termination1.18E-02
155GO:0006468: protein phosphorylation1.19E-02
156GO:0006839: mitochondrial transport1.27E-02
157GO:0006790: sulfur compound metabolic process1.30E-02
158GO:0010582: floral meristem determinacy1.30E-02
159GO:0008380: RNA splicing1.35E-02
160GO:0009767: photosynthetic electron transport chain1.42E-02
161GO:0010588: cotyledon vascular tissue pattern formation1.42E-02
162GO:2000012: regulation of auxin polar transport1.42E-02
163GO:0030048: actin filament-based movement1.42E-02
164GO:0009785: blue light signaling pathway1.42E-02
165GO:0010628: positive regulation of gene expression1.42E-02
166GO:0006006: glucose metabolic process1.42E-02
167GO:0030036: actin cytoskeleton organization1.42E-02
168GO:0009725: response to hormone1.42E-02
169GO:0008283: cell proliferation1.44E-02
170GO:0048467: gynoecium development1.55E-02
171GO:0010020: chloroplast fission1.55E-02
172GO:0009933: meristem structural organization1.55E-02
173GO:0009934: regulation of meristem structural organization1.55E-02
174GO:0090351: seedling development1.68E-02
175GO:0010030: positive regulation of seed germination1.68E-02
176GO:0070588: calcium ion transmembrane transport1.68E-02
177GO:0010025: wax biosynthetic process1.81E-02
178GO:0042753: positive regulation of circadian rhythm1.81E-02
179GO:0009833: plant-type primary cell wall biogenesis1.81E-02
180GO:0019344: cysteine biosynthetic process1.95E-02
181GO:0009944: polarity specification of adaxial/abaxial axis1.95E-02
182GO:0009585: red, far-red light phototransduction1.95E-02
183GO:0007010: cytoskeleton organization1.95E-02
184GO:0051017: actin filament bundle assembly1.95E-02
185GO:0010187: negative regulation of seed germination1.95E-02
186GO:0016310: phosphorylation2.08E-02
187GO:0008299: isoprenoid biosynthetic process2.09E-02
188GO:0006418: tRNA aminoacylation for protein translation2.09E-02
189GO:0006874: cellular calcium ion homeostasis2.09E-02
190GO:0043622: cortical microtubule organization2.09E-02
191GO:0006825: copper ion transport2.09E-02
192GO:2000022: regulation of jasmonic acid mediated signaling pathway2.38E-02
193GO:0048367: shoot system development2.38E-02
194GO:0010082: regulation of root meristem growth2.54E-02
195GO:0009686: gibberellin biosynthetic process2.54E-02
196GO:0009416: response to light stimulus2.62E-02
197GO:0009740: gibberellic acid mediated signaling pathway2.62E-02
198GO:0010214: seed coat development2.69E-02
199GO:0010091: trichome branching2.69E-02
200GO:0019722: calcium-mediated signaling2.69E-02
201GO:0016117: carotenoid biosynthetic process2.85E-02
202GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.85E-02
203GO:0070417: cellular response to cold2.85E-02
204GO:0008284: positive regulation of cell proliferation2.85E-02
205GO:0042631: cellular response to water deprivation3.01E-02
206GO:0042335: cuticle development3.01E-02
207GO:0000271: polysaccharide biosynthetic process3.01E-02
208GO:0080022: primary root development3.01E-02
209GO:0008033: tRNA processing3.01E-02
210GO:0034220: ion transmembrane transport3.01E-02
211GO:0008360: regulation of cell shape3.18E-02
212GO:0045489: pectin biosynthetic process3.18E-02
213GO:0010154: fruit development3.18E-02
214GO:0010197: polar nucleus fusion3.18E-02
215GO:0010182: sugar mediated signaling pathway3.18E-02
216GO:0006508: proteolysis3.28E-02
217GO:0048825: cotyledon development3.52E-02
218GO:0009851: auxin biosynthetic process3.52E-02
219GO:0016042: lipid catabolic process3.85E-02
220GO:0010583: response to cyclopentenone3.87E-02
221GO:0009639: response to red or far red light4.23E-02
222GO:0006464: cellular protein modification process4.23E-02
223GO:0071805: potassium ion transmembrane transport4.42E-02
224GO:0045490: pectin catabolic process4.78E-02
RankGO TermAdjusted P value
1GO:0019136: deoxynucleoside kinase activity0.00E+00
2GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
3GO:0019808: polyamine binding0.00E+00
4GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
5GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0015276: ligand-gated ion channel activity0.00E+00
8GO:0003727: single-stranded RNA binding3.15E-04
9GO:0050139: nicotinate-N-glucosyltransferase activity3.65E-04
10GO:0008066: glutamate receptor activity3.65E-04
11GO:0004008: copper-exporting ATPase activity3.65E-04
12GO:0010313: phytochrome binding3.65E-04
13GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity7.94E-04
14GO:0003938: IMP dehydrogenase activity7.94E-04
15GO:0004817: cysteine-tRNA ligase activity7.94E-04
16GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity7.94E-04
17GO:0080097: L-tryptophan:pyruvate aminotransferase activity7.94E-04
18GO:0050017: L-3-cyanoalanine synthase activity7.94E-04
19GO:0017118: lipoyltransferase activity7.94E-04
20GO:0043425: bHLH transcription factor binding7.94E-04
21GO:0004805: trehalose-phosphatase activity8.18E-04
22GO:0005262: calcium channel activity1.22E-03
23GO:0052655: L-valine transaminase activity1.85E-03
24GO:0003999: adenine phosphoribosyltransferase activity1.85E-03
25GO:0017172: cysteine dioxygenase activity1.85E-03
26GO:0052656: L-isoleucine transaminase activity1.85E-03
27GO:0047627: adenylylsulfatase activity1.85E-03
28GO:0052654: L-leucine transaminase activity1.85E-03
29GO:0004176: ATP-dependent peptidase activity2.30E-03
30GO:0008017: microtubule binding2.44E-03
31GO:0004845: uracil phosphoribosyltransferase activity2.49E-03
32GO:0004345: glucose-6-phosphate dehydrogenase activity2.49E-03
33GO:0008409: 5'-3' exonuclease activity2.49E-03
34GO:0016985: mannan endo-1,4-beta-mannosidase activity2.49E-03
35GO:0080032: methyl jasmonate esterase activity2.49E-03
36GO:0043015: gamma-tubulin binding2.49E-03
37GO:0009044: xylan 1,4-beta-xylosidase activity2.49E-03
38GO:0004084: branched-chain-amino-acid transaminase activity2.49E-03
39GO:0046556: alpha-L-arabinofuranosidase activity2.49E-03
40GO:0004372: glycine hydroxymethyltransferase activity3.18E-03
41GO:0016846: carbon-sulfur lyase activity3.18E-03
42GO:0016773: phosphotransferase activity, alcohol group as acceptor3.18E-03
43GO:0004674: protein serine/threonine kinase activity3.30E-03
44GO:0016208: AMP binding3.93E-03
45GO:0042578: phosphoric ester hydrolase activity3.93E-03
46GO:0016788: hydrolase activity, acting on ester bonds4.56E-03
47GO:0004124: cysteine synthase activity4.74E-03
48GO:0004849: uridine kinase activity4.74E-03
49GO:0003730: mRNA 3'-UTR binding4.74E-03
50GO:0003872: 6-phosphofructokinase activity5.60E-03
51GO:0043022: ribosome binding6.51E-03
52GO:0004311: farnesyltranstransferase activity6.51E-03
53GO:0052689: carboxylic ester hydrolase activity7.16E-03
54GO:0005375: copper ion transmembrane transporter activity7.47E-03
55GO:0004252: serine-type endopeptidase activity8.16E-03
56GO:0004337: geranyltranstransferase activity8.47E-03
57GO:0003747: translation release factor activity8.47E-03
58GO:0004675: transmembrane receptor protein serine/threonine kinase activity9.85E-03
59GO:0004161: dimethylallyltranstransferase activity1.18E-02
60GO:0005089: Rho guanyl-nucleotide exchange factor activity1.18E-02
61GO:0008794: arsenate reductase (glutaredoxin) activity1.18E-02
62GO:0016301: kinase activity1.40E-02
63GO:0003725: double-stranded RNA binding1.42E-02
64GO:0000175: 3'-5'-exoribonuclease activity1.42E-02
65GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.42E-02
66GO:0008083: growth factor activity1.55E-02
67GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.55E-02
68GO:0043621: protein self-association1.56E-02
69GO:0004970: ionotropic glutamate receptor activity1.68E-02
70GO:0005217: intracellular ligand-gated ion channel activity1.68E-02
71GO:0003887: DNA-directed DNA polymerase activity1.81E-02
72GO:0005528: FK506 binding1.95E-02
73GO:0003714: transcription corepressor activity1.95E-02
74GO:0003690: double-stranded DNA binding2.02E-02
75GO:0015079: potassium ion transmembrane transporter activity2.09E-02
76GO:0033612: receptor serine/threonine kinase binding2.24E-02
77GO:0008408: 3'-5' exonuclease activity2.24E-02
78GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.38E-02
79GO:0030570: pectate lyase activity2.54E-02
80GO:0016760: cellulose synthase (UDP-forming) activity2.54E-02
81GO:0016874: ligase activity2.62E-02
82GO:0004812: aminoacyl-tRNA ligase activity2.85E-02
83GO:0005524: ATP binding2.90E-02
84GO:0008536: Ran GTPase binding3.18E-02
85GO:0001085: RNA polymerase II transcription factor binding3.18E-02
86GO:0004871: signal transducer activity3.26E-02
87GO:0010181: FMN binding3.35E-02
88GO:0019843: rRNA binding3.48E-02
89GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.57E-02
90GO:0016829: lyase activity3.76E-02
91GO:0016757: transferase activity, transferring glycosyl groups4.02E-02
92GO:0000156: phosphorelay response regulator activity4.05E-02
93GO:0051015: actin filament binding4.05E-02
94GO:0016791: phosphatase activity4.23E-02
95GO:0016759: cellulose synthase activity4.23E-02
96GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.42E-02
97GO:0008237: metallopeptidase activity4.42E-02
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Gene type



Gene DE type