Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G51560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090615: mitochondrial mRNA processing0.00E+00
2GO:0000492: box C/D snoRNP assembly0.00E+00
3GO:0042794: rRNA transcription from plastid promoter0.00E+00
4GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
5GO:0045014: negative regulation of transcription by glucose0.00E+00
6GO:0000819: sister chromatid segregation0.00E+00
7GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
8GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
9GO:0090627: plant epidermal cell differentiation0.00E+00
10GO:0009606: tropism0.00E+00
11GO:0090322: regulation of superoxide metabolic process0.00E+00
12GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
13GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
14GO:0080127: fruit septum development0.00E+00
15GO:0044774: mitotic DNA integrity checkpoint0.00E+00
16GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
17GO:0042793: transcription from plastid promoter8.78E-08
18GO:0009658: chloroplast organization3.85E-07
19GO:0006353: DNA-templated transcription, termination3.59E-05
20GO:0006518: peptide metabolic process4.49E-05
21GO:0042127: regulation of cell proliferation6.72E-05
22GO:2000038: regulation of stomatal complex development1.64E-04
23GO:0009451: RNA modification3.33E-04
24GO:0009913: epidermal cell differentiation3.52E-04
25GO:1901259: chloroplast rRNA processing4.68E-04
26GO:0006436: tryptophanyl-tRNA aminoacylation5.54E-04
27GO:0034757: negative regulation of iron ion transport5.54E-04
28GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process5.54E-04
29GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic5.54E-04
30GO:1905039: carboxylic acid transmembrane transport5.54E-04
31GO:0080112: seed growth5.54E-04
32GO:1905200: gibberellic acid transmembrane transport5.54E-04
33GO:1903866: palisade mesophyll development5.54E-04
34GO:0010063: positive regulation of trichoblast fate specification5.54E-04
35GO:0090063: positive regulation of microtubule nucleation5.54E-04
36GO:0042759: long-chain fatty acid biosynthetic process5.54E-04
37GO:0006401: RNA catabolic process6.00E-04
38GO:0006955: immune response6.00E-04
39GO:0042255: ribosome assembly7.46E-04
40GO:0007389: pattern specification process9.08E-04
41GO:0010305: leaf vascular tissue pattern formation9.47E-04
42GO:0009793: embryo development ending in seed dormancy9.54E-04
43GO:0000373: Group II intron splicing1.09E-03
44GO:2000123: positive regulation of stomatal complex development1.19E-03
45GO:1901529: positive regulation of anion channel activity1.19E-03
46GO:0033566: gamma-tubulin complex localization1.19E-03
47GO:0009967: positive regulation of signal transduction1.19E-03
48GO:1902326: positive regulation of chlorophyll biosynthetic process1.19E-03
49GO:0010569: regulation of double-strand break repair via homologous recombination1.19E-03
50GO:0010271: regulation of chlorophyll catabolic process1.19E-03
51GO:0048731: system development1.19E-03
52GO:0010541: acropetal auxin transport1.19E-03
53GO:0018026: peptidyl-lysine monomethylation1.19E-03
54GO:0009662: etioplast organization1.19E-03
55GO:1900033: negative regulation of trichome patterning1.19E-03
56GO:1904143: positive regulation of carotenoid biosynthetic process1.19E-03
57GO:0080009: mRNA methylation1.19E-03
58GO:1900865: chloroplast RNA modification1.28E-03
59GO:0040008: regulation of growth1.30E-03
60GO:0032502: developmental process1.34E-03
61GO:0010583: response to cyclopentenone1.34E-03
62GO:0048829: root cap development1.49E-03
63GO:0006535: cysteine biosynthetic process from serine1.49E-03
64GO:0006364: rRNA processing1.50E-03
65GO:0048229: gametophyte development1.73E-03
66GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.96E-03
67GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.96E-03
68GO:0080117: secondary growth1.96E-03
69GO:0044210: 'de novo' CTP biosynthetic process1.96E-03
70GO:0090391: granum assembly1.96E-03
71GO:0042780: tRNA 3'-end processing1.96E-03
72GO:0001578: microtubule bundle formation1.96E-03
73GO:0045037: protein import into chloroplast stroma1.98E-03
74GO:0048367: shoot system development2.04E-03
75GO:0010588: cotyledon vascular tissue pattern formation2.25E-03
76GO:0009416: response to light stimulus2.62E-03
77GO:0048481: plant ovule development2.78E-03
78GO:0048364: root development2.82E-03
79GO:0010371: regulation of gibberellin biosynthetic process2.84E-03
80GO:1902476: chloride transmembrane transport2.84E-03
81GO:0010071: root meristem specification2.84E-03
82GO:0051513: regulation of monopolar cell growth2.84E-03
83GO:0009102: biotin biosynthetic process2.84E-03
84GO:0010239: chloroplast mRNA processing2.84E-03
85GO:0007276: gamete generation2.84E-03
86GO:0043481: anthocyanin accumulation in tissues in response to UV light2.84E-03
87GO:0010306: rhamnogalacturonan II biosynthetic process2.84E-03
88GO:0009558: embryo sac cellularization2.84E-03
89GO:0080188: RNA-directed DNA methylation2.85E-03
90GO:0019344: cysteine biosynthetic process3.53E-03
91GO:0006479: protein methylation3.83E-03
92GO:0048629: trichome patterning3.83E-03
93GO:1900864: mitochondrial RNA modification3.83E-03
94GO:0051322: anaphase3.83E-03
95GO:0006221: pyrimidine nucleotide biosynthetic process3.83E-03
96GO:0003333: amino acid transmembrane transport4.30E-03
97GO:0016998: cell wall macromolecule catabolic process4.30E-03
98GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.74E-03
99GO:0016123: xanthophyll biosynthetic process4.91E-03
100GO:0032876: negative regulation of DNA endoreduplication4.91E-03
101GO:0030308: negative regulation of cell growth4.91E-03
102GO:0010375: stomatal complex patterning4.91E-03
103GO:0016120: carotene biosynthetic process4.91E-03
104GO:0048497: maintenance of floral organ identity4.91E-03
105GO:0009734: auxin-activated signaling pathway5.11E-03
106GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.13E-03
107GO:0071215: cellular response to abscisic acid stimulus5.13E-03
108GO:0009959: negative gravitropism6.09E-03
109GO:0060918: auxin transport6.09E-03
110GO:0016554: cytidine to uridine editing6.09E-03
111GO:1902456: regulation of stomatal opening6.09E-03
112GO:0048831: regulation of shoot system development6.09E-03
113GO:0010315: auxin efflux6.09E-03
114GO:0003006: developmental process involved in reproduction6.09E-03
115GO:0009643: photosynthetic acclimation6.09E-03
116GO:0010087: phloem or xylem histogenesis6.56E-03
117GO:0008033: tRNA processing6.56E-03
118GO:0009741: response to brassinosteroid7.07E-03
119GO:2000037: regulation of stomatal complex patterning7.36E-03
120GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity7.36E-03
121GO:0010310: regulation of hydrogen peroxide metabolic process7.36E-03
122GO:0009955: adaxial/abaxial pattern specification7.36E-03
123GO:0009082: branched-chain amino acid biosynthetic process7.36E-03
124GO:0009942: longitudinal axis specification7.36E-03
125GO:0048509: regulation of meristem development7.36E-03
126GO:0009099: valine biosynthetic process7.36E-03
127GO:0007018: microtubule-based movement7.61E-03
128GO:0009736: cytokinin-activated signaling pathway7.64E-03
129GO:0006351: transcription, DNA-templated8.02E-03
130GO:0048825: cotyledon development8.17E-03
131GO:0010103: stomatal complex morphogenesis8.71E-03
132GO:0000712: resolution of meiotic recombination intermediates8.71E-03
133GO:0006821: chloride transport8.71E-03
134GO:0048437: floral organ development8.71E-03
135GO:0010444: guard mother cell differentiation8.71E-03
136GO:0000082: G1/S transition of mitotic cell cycle8.71E-03
137GO:0080156: mitochondrial mRNA modification8.75E-03
138GO:0006355: regulation of transcription, DNA-templated9.64E-03
139GO:0052543: callose deposition in cell wall1.01E-02
140GO:0006402: mRNA catabolic process1.01E-02
141GO:0001522: pseudouridine synthesis1.01E-02
142GO:0009642: response to light intensity1.01E-02
143GO:0046620: regulation of organ growth1.01E-02
144GO:0048766: root hair initiation1.01E-02
145GO:0010492: maintenance of shoot apical meristem identity1.01E-02
146GO:0009828: plant-type cell wall loosening1.06E-02
147GO:0019430: removal of superoxide radicals1.17E-02
148GO:0009827: plant-type cell wall modification1.17E-02
149GO:0001510: RNA methylation1.17E-02
150GO:0010497: plasmodesmata-mediated intercellular transport1.17E-02
151GO:0009657: plastid organization1.17E-02
152GO:0048574: long-day photoperiodism, flowering1.17E-02
153GO:0009097: isoleucine biosynthetic process1.17E-02
154GO:0032544: plastid translation1.17E-02
155GO:0000910: cytokinesis1.20E-02
156GO:0006396: RNA processing1.25E-02
157GO:0010027: thylakoid membrane organization1.27E-02
158GO:0000902: cell morphogenesis1.33E-02
159GO:0048507: meristem development1.33E-02
160GO:0048589: developmental growth1.33E-02
161GO:0048366: leaf development1.48E-02
162GO:0042761: very long-chain fatty acid biosynthetic process1.49E-02
163GO:0006349: regulation of gene expression by genetic imprinting1.49E-02
164GO:0031425: chloroplast RNA processing1.49E-02
165GO:0009733: response to auxin1.54E-02
166GO:0045036: protein targeting to chloroplast1.67E-02
167GO:0009641: shade avoidance1.67E-02
168GO:0016441: posttranscriptional gene silencing1.67E-02
169GO:0006949: syncytium formation1.67E-02
170GO:0006259: DNA metabolic process1.67E-02
171GO:0010048: vernalization response1.67E-02
172GO:0000160: phosphorelay signal transduction system1.75E-02
173GO:0009845: seed germination1.77E-02
174GO:0048765: root hair cell differentiation1.85E-02
175GO:0046856: phosphatidylinositol dephosphorylation1.85E-02
176GO:0006265: DNA topological change1.85E-02
177GO:0008285: negative regulation of cell proliferation1.85E-02
178GO:0015770: sucrose transport1.85E-02
179GO:1903507: negative regulation of nucleic acid-templated transcription1.85E-02
180GO:0009750: response to fructose1.85E-02
181GO:0009790: embryo development1.95E-02
182GO:0006865: amino acid transport2.02E-02
183GO:0008361: regulation of cell size2.04E-02
184GO:0006312: mitotic recombination2.04E-02
185GO:0012501: programmed cell death2.04E-02
186GO:0010152: pollen maturation2.04E-02
187GO:0010582: floral meristem determinacy2.04E-02
188GO:0045892: negative regulation of transcription, DNA-templated2.15E-02
189GO:0010102: lateral root morphogenesis2.23E-02
190GO:0009691: cytokinin biosynthetic process2.23E-02
191GO:0030001: metal ion transport2.41E-02
192GO:0009887: animal organ morphogenesis2.43E-02
193GO:0010540: basipetal auxin transport2.43E-02
194GO:0048768: root hair cell tip growth2.43E-02
195GO:0048467: gynoecium development2.43E-02
196GO:0010020: chloroplast fission2.43E-02
197GO:0009901: anther dehiscence2.64E-02
198GO:0009744: response to sucrose2.73E-02
199GO:0016042: lipid catabolic process2.75E-02
200GO:0010025: wax biosynthetic process2.85E-02
201GO:0006636: unsaturated fatty acid biosynthetic process2.85E-02
202GO:0008380: RNA splicing3.00E-02
203GO:2000377: regulation of reactive oxygen species metabolic process3.07E-02
204GO:0080147: root hair cell development3.07E-02
205GO:0010073: meristem maintenance3.29E-02
206GO:0006418: tRNA aminoacylation for protein translation3.29E-02
207GO:0009664: plant-type cell wall organization3.43E-02
208GO:0010431: seed maturation3.52E-02
209GO:0030245: cellulose catabolic process3.75E-02
210GO:2000022: regulation of jasmonic acid mediated signaling pathway3.75E-02
211GO:0010082: regulation of root meristem growth3.99E-02
212GO:0048443: stamen development4.24E-02
213GO:0048316: seed development4.48E-02
214GO:0070417: cellular response to cold4.49E-02
215GO:0010118: stomatal movement4.74E-02
216GO:0042631: cellular response to water deprivation4.74E-02
217GO:0000226: microtubule cytoskeleton organization4.74E-02
218GO:0042335: cuticle development4.74E-02
219GO:0080022: primary root development4.74E-02
220GO:0010501: RNA secondary structure unwinding4.74E-02
221GO:0048868: pollen tube development5.00E-02
222GO:0009958: positive gravitropism5.00E-02
223GO:0009960: endosperm development5.00E-02
224GO:0071472: cellular response to salt stress5.00E-02
RankGO TermAdjusted P value
1GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
2GO:0008859: exoribonuclease II activity0.00E+00
3GO:0042834: peptidoglycan binding0.00E+00
4GO:0071633: dihydroceramidase activity0.00E+00
5GO:0004141: dethiobiotin synthase activity0.00E+00
6GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
7GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity0.00E+00
8GO:0003723: RNA binding2.68E-06
9GO:0008173: RNA methyltransferase activity5.03E-05
10GO:0004519: endonuclease activity5.08E-05
11GO:0004124: cysteine synthase activity4.68E-04
12GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor5.54E-04
13GO:0004654: polyribonucleotide nucleotidyltransferase activity5.54E-04
14GO:0004016: adenylate cyclase activity5.54E-04
15GO:1905201: gibberellin transmembrane transporter activity5.54E-04
16GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity5.54E-04
17GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.54E-04
18GO:0016274: protein-arginine N-methyltransferase activity5.54E-04
19GO:0052381: tRNA dimethylallyltransferase activity5.54E-04
20GO:0004160: dihydroxy-acid dehydratase activity5.54E-04
21GO:0004830: tryptophan-tRNA ligase activity5.54E-04
22GO:0003727: single-stranded RNA binding7.04E-04
23GO:0042389: omega-3 fatty acid desaturase activity1.19E-03
24GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.19E-03
25GO:0005078: MAP-kinase scaffold activity1.19E-03
26GO:0009884: cytokinin receptor activity1.19E-03
27GO:0005034: osmosensor activity1.96E-03
28GO:0017150: tRNA dihydrouridine synthase activity1.96E-03
29GO:0042781: 3'-tRNA processing endoribonuclease activity1.96E-03
30GO:0016805: dipeptidase activity1.96E-03
31GO:0000175: 3'-5'-exoribonuclease activity2.25E-03
32GO:0001872: (1->3)-beta-D-glucan binding2.84E-03
33GO:0009041: uridylate kinase activity2.84E-03
34GO:0003883: CTP synthase activity2.84E-03
35GO:0003916: DNA topoisomerase activity2.84E-03
36GO:0008168: methyltransferase activity2.86E-03
37GO:0004222: metalloendopeptidase activity3.15E-03
38GO:0019843: rRNA binding3.64E-03
39GO:0016279: protein-lysine N-methyltransferase activity3.83E-03
40GO:0010011: auxin binding3.83E-03
41GO:0016836: hydro-lyase activity3.83E-03
42GO:0010328: auxin influx transmembrane transporter activity3.83E-03
43GO:0005253: anion channel activity3.83E-03
44GO:0004930: G-protein coupled receptor activity3.83E-03
45GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.91E-03
46GO:0004888: transmembrane signaling receptor activity4.91E-03
47GO:0030570: pectate lyase activity5.13E-03
48GO:0005247: voltage-gated chloride channel activity6.09E-03
49GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity6.09E-03
50GO:0004784: superoxide dismutase activity6.09E-03
51GO:0042803: protein homodimerization activity6.65E-03
52GO:0003700: transcription factor activity, sequence-specific DNA binding7.06E-03
53GO:0019900: kinase binding7.36E-03
54GO:0016832: aldehyde-lyase activity7.36E-03
55GO:0003690: double-stranded DNA binding7.99E-03
56GO:0019901: protein kinase binding8.17E-03
57GO:0003777: microtubule motor activity8.71E-03
58GO:0030515: snoRNA binding8.71E-03
59GO:0043565: sequence-specific DNA binding1.08E-02
60GO:0003724: RNA helicase activity1.17E-02
61GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.17E-02
62GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.17E-02
63GO:0016788: hydrolase activity, acting on ester bonds1.19E-02
64GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.38E-02
65GO:0009672: auxin:proton symporter activity1.49E-02
66GO:0003677: DNA binding1.50E-02
67GO:0008289: lipid binding1.57E-02
68GO:0004673: protein histidine kinase activity1.67E-02
69GO:0008559: xenobiotic-transporting ATPase activity1.85E-02
70GO:0008515: sucrose transmembrane transporter activity1.85E-02
71GO:0052689: carboxylic ester hydrolase activity1.87E-02
72GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.89E-02
73GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.04E-02
74GO:0000155: phosphorelay sensor kinase activity2.23E-02
75GO:0009982: pseudouridine synthase activity2.23E-02
76GO:0003725: double-stranded RNA binding2.23E-02
77GO:0010329: auxin efflux transmembrane transporter activity2.23E-02
78GO:0004871: signal transducer activity2.25E-02
79GO:0051539: 4 iron, 4 sulfur cluster binding2.41E-02
80GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.43E-02
81GO:0008017: microtubule binding2.55E-02
82GO:0004190: aspartic-type endopeptidase activity2.64E-02
83GO:0003712: transcription cofactor activity2.64E-02
84GO:0051119: sugar transmembrane transporter activity2.64E-02
85GO:0015293: symporter activity3.07E-02
86GO:0003714: transcription corepressor activity3.07E-02
87GO:0043424: protein histidine kinase binding3.29E-02
88GO:0015079: potassium ion transmembrane transporter activity3.29E-02
89GO:0008094: DNA-dependent ATPase activity3.52E-02
90GO:0004540: ribonuclease activity3.52E-02
91GO:0005515: protein binding3.89E-02
92GO:0008810: cellulase activity3.99E-02
93GO:0015171: amino acid transmembrane transporter activity4.07E-02
94GO:0004812: aminoacyl-tRNA ligase activity4.49E-02
95GO:0005102: receptor binding4.49E-02
96GO:0018024: histone-lysine N-methyltransferase activity4.49E-02
97GO:0003713: transcription coactivator activity5.00E-02
98GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity5.00E-02
99GO:0001085: RNA polymerase II transcription factor binding5.00E-02
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Gene type



Gene DE type