Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G51540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019988: charged-tRNA amino acid modification0.00E+00
2GO:0090615: mitochondrial mRNA processing0.00E+00
3GO:0000492: box C/D snoRNP assembly0.00E+00
4GO:0042794: rRNA transcription from plastid promoter0.00E+00
5GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
6GO:0045014: negative regulation of transcription by glucose0.00E+00
7GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
8GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
9GO:0090627: plant epidermal cell differentiation0.00E+00
10GO:0009606: tropism0.00E+00
11GO:0090322: regulation of superoxide metabolic process0.00E+00
12GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
13GO:0080127: fruit septum development0.00E+00
14GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
15GO:0046486: glycerolipid metabolic process0.00E+00
16GO:0042793: transcription from plastid promoter6.64E-08
17GO:0009451: RNA modification4.03E-07
18GO:0009658: chloroplast organization2.32E-06
19GO:0042127: regulation of cell proliferation5.35E-05
20GO:0006479: protein methylation1.44E-04
21GO:0006364: rRNA processing2.19E-04
22GO:0048497: maintenance of floral organ identity2.20E-04
23GO:0009913: epidermal cell differentiation3.11E-04
24GO:1901259: chloroplast rRNA processing4.15E-04
25GO:0034757: negative regulation of iron ion transport5.12E-04
26GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process5.12E-04
27GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic5.12E-04
28GO:1905039: carboxylic acid transmembrane transport5.12E-04
29GO:1905200: gibberellic acid transmembrane transport5.12E-04
30GO:0080112: seed growth5.12E-04
31GO:1903866: palisade mesophyll development5.12E-04
32GO:0010063: positive regulation of trichoblast fate specification5.12E-04
33GO:0090063: positive regulation of microtubule nucleation5.12E-04
34GO:0006401: RNA catabolic process5.33E-04
35GO:0006955: immune response5.33E-04
36GO:0009793: embryo development ending in seed dormancy6.45E-04
37GO:0042255: ribosome assembly6.64E-04
38GO:0006353: DNA-templated transcription, termination6.64E-04
39GO:0007389: pattern specification process8.09E-04
40GO:0010305: leaf vascular tissue pattern formation8.14E-04
41GO:0000373: Group II intron splicing9.66E-04
42GO:1901529: positive regulation of anion channel activity1.10E-03
43GO:0033566: gamma-tubulin complex localization1.10E-03
44GO:0009967: positive regulation of signal transduction1.10E-03
45GO:0048255: mRNA stabilization1.10E-03
46GO:0019374: galactolipid metabolic process1.10E-03
47GO:1902326: positive regulation of chlorophyll biosynthetic process1.10E-03
48GO:0010569: regulation of double-strand break repair via homologous recombination1.10E-03
49GO:0010271: regulation of chlorophyll catabolic process1.10E-03
50GO:0010541: acropetal auxin transport1.10E-03
51GO:0048731: system development1.10E-03
52GO:0018026: peptidyl-lysine monomethylation1.10E-03
53GO:0006650: glycerophospholipid metabolic process1.10E-03
54GO:0009662: etioplast organization1.10E-03
55GO:0009220: pyrimidine ribonucleotide biosynthetic process1.10E-03
56GO:1904143: positive regulation of carotenoid biosynthetic process1.10E-03
57GO:0080009: mRNA methylation1.10E-03
58GO:1900865: chloroplast RNA modification1.14E-03
59GO:0032502: developmental process1.15E-03
60GO:0048829: root cap development1.33E-03
61GO:0006949: syncytium formation1.33E-03
62GO:0006535: cysteine biosynthetic process from serine1.33E-03
63GO:0009828: plant-type cell wall loosening1.35E-03
64GO:0048367: shoot system development1.69E-03
65GO:0045037: protein import into chloroplast stroma1.76E-03
66GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.80E-03
67GO:0006471: protein ADP-ribosylation1.80E-03
68GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.80E-03
69GO:0080117: secondary growth1.80E-03
70GO:0046168: glycerol-3-phosphate catabolic process1.80E-03
71GO:0090391: granum assembly1.80E-03
72GO:0006518: peptide metabolic process1.80E-03
73GO:0042780: tRNA 3'-end processing1.80E-03
74GO:0001578: microtubule bundle formation1.80E-03
75GO:0010588: cotyledon vascular tissue pattern formation2.00E-03
76GO:0080188: RNA-directed DNA methylation2.53E-03
77GO:0045017: glycerolipid biosynthetic process2.61E-03
78GO:0010371: regulation of gibberellin biosynthetic process2.61E-03
79GO:1902476: chloride transmembrane transport2.61E-03
80GO:0010071: root meristem specification2.61E-03
81GO:0010239: chloroplast mRNA processing2.61E-03
82GO:0007276: gamete generation2.61E-03
83GO:0010306: rhamnogalacturonan II biosynthetic process2.61E-03
84GO:0043481: anthocyanin accumulation in tissues in response to UV light2.61E-03
85GO:0006072: glycerol-3-phosphate metabolic process2.61E-03
86GO:0019344: cysteine biosynthetic process3.13E-03
87GO:1900864: mitochondrial RNA modification3.52E-03
88GO:0051322: anaphase3.52E-03
89GO:0006221: pyrimidine nucleotide biosynthetic process3.52E-03
90GO:0051103: DNA ligation involved in DNA repair3.52E-03
91GO:0006273: lagging strand elongation3.52E-03
92GO:0044205: 'de novo' UMP biosynthetic process3.52E-03
93GO:0003333: amino acid transmembrane transport3.80E-03
94GO:0016998: cell wall macromolecule catabolic process3.80E-03
95GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.82E-03
96GO:0009734: auxin-activated signaling pathway4.02E-03
97GO:0016123: xanthophyll biosynthetic process4.52E-03
98GO:0009247: glycolipid biosynthetic process4.52E-03
99GO:0016120: carotene biosynthetic process4.52E-03
100GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.54E-03
101GO:0071215: cellular response to abscisic acid stimulus4.54E-03
102GO:0040008: regulation of growth4.60E-03
103GO:0010304: PSII associated light-harvesting complex II catabolic process5.60E-03
104GO:0060918: auxin transport5.60E-03
105GO:0016554: cytidine to uridine editing5.60E-03
106GO:1902456: regulation of stomatal opening5.60E-03
107GO:0048831: regulation of shoot system development5.60E-03
108GO:0010315: auxin efflux5.60E-03
109GO:0003006: developmental process involved in reproduction5.60E-03
110GO:0009643: photosynthetic acclimation5.60E-03
111GO:0006014: D-ribose metabolic process5.60E-03
112GO:0010087: phloem or xylem histogenesis5.80E-03
113GO:0008033: tRNA processing5.80E-03
114GO:0010501: RNA secondary structure unwinding5.80E-03
115GO:0009664: plant-type cell wall organization5.97E-03
116GO:0009741: response to brassinosteroid6.25E-03
117GO:0009736: cytokinin-activated signaling pathway6.54E-03
118GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity6.75E-03
119GO:0010310: regulation of hydrogen peroxide metabolic process6.75E-03
120GO:0009955: adaxial/abaxial pattern specification6.75E-03
121GO:0009082: branched-chain amino acid biosynthetic process6.75E-03
122GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.75E-03
123GO:0009942: longitudinal axis specification6.75E-03
124GO:0048509: regulation of meristem development6.75E-03
125GO:0009099: valine biosynthetic process6.75E-03
126GO:0048825: cotyledon development7.22E-03
127GO:0048364: root development7.68E-03
128GO:0080156: mitochondrial mRNA modification7.73E-03
129GO:0006355: regulation of transcription, DNA-templated7.83E-03
130GO:0010103: stomatal complex morphogenesis7.99E-03
131GO:0006821: chloride transport7.99E-03
132GO:0048437: floral organ development7.99E-03
133GO:0010444: guard mother cell differentiation7.99E-03
134GO:0000082: G1/S transition of mitotic cell cycle7.99E-03
135GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.99E-03
136GO:0010583: response to cyclopentenone8.27E-03
137GO:0052543: callose deposition in cell wall9.31E-03
138GO:0006402: mRNA catabolic process9.31E-03
139GO:0001522: pseudouridine synthesis9.31E-03
140GO:0009642: response to light intensity9.31E-03
141GO:0019375: galactolipid biosynthetic process9.31E-03
142GO:0046620: regulation of organ growth9.31E-03
143GO:0048766: root hair initiation9.31E-03
144GO:0010492: maintenance of shoot apical meristem identity9.31E-03
145GO:0019430: removal of superoxide radicals1.07E-02
146GO:0009827: plant-type cell wall modification1.07E-02
147GO:0010497: plasmodesmata-mediated intercellular transport1.07E-02
148GO:0009657: plastid organization1.07E-02
149GO:0009097: isoleucine biosynthetic process1.07E-02
150GO:0032544: plastid translation1.07E-02
151GO:0010027: thylakoid membrane organization1.12E-02
152GO:0000902: cell morphogenesis1.22E-02
153GO:0048507: meristem development1.22E-02
154GO:0048589: developmental growth1.22E-02
155GO:0006349: regulation of gene expression by genetic imprinting1.37E-02
156GO:0031425: chloroplast RNA processing1.37E-02
157GO:0048481: plant ovule development1.47E-02
158GO:0009845: seed germination1.51E-02
159GO:0045036: protein targeting to chloroplast1.53E-02
160GO:0009641: shade avoidance1.53E-02
161GO:0016441: posttranscriptional gene silencing1.53E-02
162GO:0010048: vernalization response1.53E-02
163GO:0000160: phosphorelay signal transduction system1.55E-02
164GO:0048765: root hair cell differentiation1.69E-02
165GO:0046856: phosphatidylinositol dephosphorylation1.69E-02
166GO:1903507: negative regulation of nucleic acid-templated transcription1.69E-02
167GO:0015770: sucrose transport1.69E-02
168GO:0009750: response to fructose1.69E-02
169GO:0048229: gametophyte development1.69E-02
170GO:0006865: amino acid transport1.79E-02
171GO:0012501: programmed cell death1.86E-02
172GO:0010152: pollen maturation1.86E-02
173GO:0010582: floral meristem determinacy1.86E-02
174GO:0009416: response to light stimulus1.93E-02
175GO:0006351: transcription, DNA-templated1.93E-02
176GO:0010102: lateral root morphogenesis2.04E-02
177GO:0009691: cytokinin biosynthetic process2.04E-02
178GO:0009887: animal organ morphogenesis2.23E-02
179GO:0010540: basipetal auxin transport2.23E-02
180GO:0048768: root hair cell tip growth2.23E-02
181GO:0048467: gynoecium development2.23E-02
182GO:0010020: chloroplast fission2.23E-02
183GO:0009744: response to sucrose2.41E-02
184GO:0009901: anther dehiscence2.41E-02
185GO:0007166: cell surface receptor signaling pathway2.44E-02
186GO:0008380: RNA splicing2.57E-02
187GO:0006636: unsaturated fatty acid biosynthetic process2.61E-02
188GO:2000377: regulation of reactive oxygen species metabolic process2.81E-02
189GO:0010073: meristem maintenance3.01E-02
190GO:0019953: sexual reproduction3.01E-02
191GO:0009733: response to auxin3.05E-02
192GO:0010431: seed maturation3.22E-02
193GO:0009826: unidimensional cell growth3.39E-02
194GO:0030245: cellulose catabolic process3.44E-02
195GO:2000022: regulation of jasmonic acid mediated signaling pathway3.44E-02
196GO:0006417: regulation of translation3.60E-02
197GO:0010082: regulation of root meristem growth3.66E-02
198GO:0048443: stamen development3.88E-02
199GO:0010091: trichome branching3.88E-02
200GO:0048316: seed development3.96E-02
201GO:0070417: cellular response to cold4.11E-02
202GO:0007165: signal transduction4.21E-02
203GO:0010118: stomatal movement4.34E-02
204GO:0000226: microtubule cytoskeleton organization4.34E-02
205GO:0042335: cuticle development4.34E-02
206GO:0080022: primary root development4.34E-02
207GO:0048366: leaf development4.35E-02
208GO:0009553: embryo sac development4.48E-02
209GO:0048868: pollen tube development4.58E-02
210GO:0009958: positive gravitropism4.58E-02
211GO:0009960: endosperm development4.58E-02
212GO:0071472: cellular response to salt stress4.58E-02
213GO:0009624: response to nematode4.61E-02
214GO:0006468: protein phosphorylation4.72E-02
215GO:0006396: RNA processing4.75E-02
216GO:0007018: microtubule-based movement4.82E-02
217GO:0006814: sodium ion transport4.82E-02
218GO:0009646: response to absence of light4.82E-02
219GO:0051726: regulation of cell cycle4.88E-02
220GO:0009742: brassinosteroid mediated signaling pathway4.88E-02
RankGO TermAdjusted P value
1GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity0.00E+00
2GO:0016763: transferase activity, transferring pentosyl groups0.00E+00
3GO:0008859: exoribonuclease II activity0.00E+00
4GO:0042834: peptidoglycan binding0.00E+00
5GO:0071633: dihydroceramidase activity0.00E+00
6GO:0004152: dihydroorotate dehydrogenase activity0.00E+00
7GO:0003723: RNA binding1.22E-08
8GO:0004519: endonuclease activity6.06E-07
9GO:0004124: cysteine synthase activity4.15E-04
10GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor5.12E-04
11GO:0004654: polyribonucleotide nucleotidyltransferase activity5.12E-04
12GO:0004016: adenylate cyclase activity5.12E-04
13GO:1905201: gibberellin transmembrane transporter activity5.12E-04
14GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity5.12E-04
15GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.12E-04
16GO:0016274: protein-arginine N-methyltransferase activity5.12E-04
17GO:0052381: tRNA dimethylallyltransferase activity5.12E-04
18GO:0004160: dihydroxy-acid dehydratase activity5.12E-04
19GO:0003727: single-stranded RNA binding6.04E-04
20GO:0019843: rRNA binding6.45E-04
21GO:0008173: RNA methyltransferase activity8.09E-04
22GO:0042389: omega-3 fatty acid desaturase activity1.10E-03
23GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.10E-03
24GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.10E-03
25GO:0005078: MAP-kinase scaffold activity1.10E-03
26GO:0009884: cytokinin receptor activity1.10E-03
27GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.80E-03
28GO:0017150: tRNA dihydrouridine synthase activity1.80E-03
29GO:0042781: 3'-tRNA processing endoribonuclease activity1.80E-03
30GO:0016805: dipeptidase activity1.80E-03
31GO:0005034: osmosensor activity1.80E-03
32GO:0009982: pseudouridine synthase activity2.00E-03
33GO:0000175: 3'-5'-exoribonuclease activity2.00E-03
34GO:0008168: methyltransferase activity2.30E-03
35GO:0008508: bile acid:sodium symporter activity2.61E-03
36GO:0001872: (1->3)-beta-D-glucan binding2.61E-03
37GO:0009041: uridylate kinase activity2.61E-03
38GO:0016279: protein-lysine N-methyltransferase activity3.52E-03
39GO:0010011: auxin binding3.52E-03
40GO:0016836: hydro-lyase activity3.52E-03
41GO:0010328: auxin influx transmembrane transporter activity3.52E-03
42GO:0005253: anion channel activity3.52E-03
43GO:0004930: G-protein coupled receptor activity3.52E-03
44GO:0005215: transporter activity4.24E-03
45GO:0003989: acetyl-CoA carboxylase activity4.52E-03
46GO:0003910: DNA ligase (ATP) activity4.52E-03
47GO:0004888: transmembrane signaling receptor activity4.52E-03
48GO:0030570: pectate lyase activity4.54E-03
49GO:0005247: voltage-gated chloride channel activity5.60E-03
50GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity5.60E-03
51GO:0004784: superoxide dismutase activity5.60E-03
52GO:0019900: kinase binding6.75E-03
53GO:0003950: NAD+ ADP-ribosyltransferase activity6.75E-03
54GO:0004747: ribokinase activity6.75E-03
55GO:0003690: double-stranded DNA binding6.83E-03
56GO:0019901: protein kinase binding7.22E-03
57GO:0030515: snoRNA binding7.99E-03
58GO:0008865: fructokinase activity9.31E-03
59GO:0008237: metallopeptidase activity9.99E-03
60GO:0003724: RNA helicase activity1.07E-02
61GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.07E-02
62GO:0008026: ATP-dependent helicase activity1.11E-02
63GO:0008289: lipid binding1.27E-02
64GO:0004004: ATP-dependent RNA helicase activity1.33E-02
65GO:0009672: auxin:proton symporter activity1.37E-02
66GO:0004673: protein histidine kinase activity1.53E-02
67GO:0043565: sequence-specific DNA binding1.59E-02
68GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.61E-02
69GO:0004222: metalloendopeptidase activity1.62E-02
70GO:0008559: xenobiotic-transporting ATPase activity1.69E-02
71GO:0008515: sucrose transmembrane transporter activity1.69E-02
72GO:0003700: transcription factor activity, sequence-specific DNA binding1.72E-02
73GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.86E-02
74GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.89E-02
75GO:0000155: phosphorelay sensor kinase activity2.04E-02
76GO:0003725: double-stranded RNA binding2.04E-02
77GO:0010329: auxin efflux transmembrane transporter activity2.04E-02
78GO:0004672: protein kinase activity2.08E-02
79GO:0003677: DNA binding2.12E-02
80GO:0051539: 4 iron, 4 sulfur cluster binding2.13E-02
81GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.23E-02
82GO:0004190: aspartic-type endopeptidase activity2.41E-02
83GO:0003712: transcription cofactor activity2.41E-02
84GO:0051119: sugar transmembrane transporter activity2.41E-02
85GO:0015293: symporter activity2.71E-02
86GO:0003714: transcription corepressor activity2.81E-02
87GO:0051287: NAD binding2.92E-02
88GO:0043424: protein histidine kinase binding3.01E-02
89GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.07E-02
90GO:0005515: protein binding3.16E-02
91GO:0004540: ribonuclease activity3.22E-02
92GO:0004176: ATP-dependent peptidase activity3.22E-02
93GO:0003777: microtubule motor activity3.60E-02
94GO:0015171: amino acid transmembrane transporter activity3.60E-02
95GO:0016788: hydrolase activity, acting on ester bonds3.64E-02
96GO:0008810: cellulase activity3.66E-02
97GO:0005102: receptor binding4.11E-02
98GO:0018024: histone-lysine N-methyltransferase activity4.11E-02
99GO:0003779: actin binding4.48E-02
100GO:0016887: ATPase activity4.53E-02
101GO:0003713: transcription coactivator activity4.58E-02
102GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity4.58E-02
103GO:0001085: RNA polymerase II transcription factor binding4.58E-02
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Gene type



Gene DE type