GO Enrichment Analysis of Co-expressed Genes with
AT5G49215
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009606: tropism | 0.00E+00 |
| 2 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 3 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 4 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 5 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 6 | GO:0050776: regulation of immune response | 0.00E+00 |
| 7 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 8 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 9 | GO:2000038: regulation of stomatal complex development | 2.82E-05 |
| 10 | GO:0042255: ribosome assembly | 1.59E-04 |
| 11 | GO:0034757: negative regulation of iron ion transport | 1.95E-04 |
| 12 | GO:0043971: histone H3-K18 acetylation | 1.95E-04 |
| 13 | GO:0007389: pattern specification process | 1.98E-04 |
| 14 | GO:0030422: production of siRNA involved in RNA interference | 3.37E-04 |
| 15 | GO:0010271: regulation of chlorophyll catabolic process | 4.38E-04 |
| 16 | GO:1900033: negative regulation of trichome patterning | 4.38E-04 |
| 17 | GO:0018022: peptidyl-lysine methylation | 4.38E-04 |
| 18 | GO:2000123: positive regulation of stomatal complex development | 4.38E-04 |
| 19 | GO:0080117: secondary growth | 7.14E-04 |
| 20 | GO:0010589: leaf proximal/distal pattern formation | 7.14E-04 |
| 21 | GO:0030029: actin filament-based process | 7.14E-04 |
| 22 | GO:0071705: nitrogen compound transport | 7.14E-04 |
| 23 | GO:0006168: adenine salvage | 1.02E-03 |
| 24 | GO:1902290: positive regulation of defense response to oomycetes | 1.02E-03 |
| 25 | GO:1902476: chloride transmembrane transport | 1.02E-03 |
| 26 | GO:0006166: purine ribonucleoside salvage | 1.02E-03 |
| 27 | GO:0009855: determination of bilateral symmetry | 1.02E-03 |
| 28 | GO:0009800: cinnamic acid biosynthetic process | 1.02E-03 |
| 29 | GO:0009658: chloroplast organization | 1.10E-03 |
| 30 | GO:0048629: trichome patterning | 1.35E-03 |
| 31 | GO:1900864: mitochondrial RNA modification | 1.35E-03 |
| 32 | GO:0071249: cellular response to nitrate | 1.35E-03 |
| 33 | GO:0035279: mRNA cleavage involved in gene silencing by miRNA | 1.35E-03 |
| 34 | GO:0010305: leaf vascular tissue pattern formation | 1.53E-03 |
| 35 | GO:0009416: response to light stimulus | 1.59E-03 |
| 36 | GO:0016123: xanthophyll biosynthetic process | 1.72E-03 |
| 37 | GO:0044209: AMP salvage | 1.72E-03 |
| 38 | GO:0032876: negative regulation of DNA endoreduplication | 1.72E-03 |
| 39 | GO:0030308: negative regulation of cell growth | 1.72E-03 |
| 40 | GO:0010375: stomatal complex patterning | 1.72E-03 |
| 41 | GO:0009616: virus induced gene silencing | 1.72E-03 |
| 42 | GO:0080110: sporopollenin biosynthetic process | 1.72E-03 |
| 43 | GO:0032502: developmental process | 2.01E-03 |
| 44 | GO:0042793: transcription from plastid promoter | 2.12E-03 |
| 45 | GO:0048831: regulation of shoot system development | 2.12E-03 |
| 46 | GO:0009959: negative gravitropism | 2.12E-03 |
| 47 | GO:0035194: posttranscriptional gene silencing by RNA | 2.12E-03 |
| 48 | GO:0010315: auxin efflux | 2.12E-03 |
| 49 | GO:0006559: L-phenylalanine catabolic process | 2.12E-03 |
| 50 | GO:0035435: phosphate ion transmembrane transport | 2.12E-03 |
| 51 | GO:0009639: response to red or far red light | 2.28E-03 |
| 52 | GO:0010252: auxin homeostasis | 2.28E-03 |
| 53 | GO:0010014: meristem initiation | 2.54E-03 |
| 54 | GO:0048509: regulation of meristem development | 2.54E-03 |
| 55 | GO:2000037: regulation of stomatal complex patterning | 2.54E-03 |
| 56 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 2.54E-03 |
| 57 | GO:0009955: adaxial/abaxial pattern specification | 2.54E-03 |
| 58 | GO:0080060: integument development | 2.54E-03 |
| 59 | GO:0010067: procambium histogenesis | 2.54E-03 |
| 60 | GO:0009790: embryo development | 2.72E-03 |
| 61 | GO:0048364: root development | 2.94E-03 |
| 62 | GO:0006821: chloride transport | 3.00E-03 |
| 63 | GO:0035196: production of miRNAs involved in gene silencing by miRNA | 3.00E-03 |
| 64 | GO:0010103: stomatal complex morphogenesis | 3.00E-03 |
| 65 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 3.00E-03 |
| 66 | GO:0006353: DNA-templated transcription, termination | 3.47E-03 |
| 67 | GO:0048766: root hair initiation | 3.47E-03 |
| 68 | GO:0044030: regulation of DNA methylation | 3.97E-03 |
| 69 | GO:0010093: specification of floral organ identity | 3.97E-03 |
| 70 | GO:0009880: embryonic pattern specification | 3.97E-03 |
| 71 | GO:0007186: G-protein coupled receptor signaling pathway | 3.97E-03 |
| 72 | GO:0001510: RNA methylation | 3.97E-03 |
| 73 | GO:0009910: negative regulation of flower development | 4.08E-03 |
| 74 | GO:0000373: Group II intron splicing | 4.49E-03 |
| 75 | GO:0009245: lipid A biosynthetic process | 4.49E-03 |
| 76 | GO:0048507: meristem development | 4.49E-03 |
| 77 | GO:0009734: auxin-activated signaling pathway | 4.64E-03 |
| 78 | GO:0016571: histone methylation | 5.04E-03 |
| 79 | GO:0016573: histone acetylation | 5.04E-03 |
| 80 | GO:1900426: positive regulation of defense response to bacterium | 5.04E-03 |
| 81 | GO:0031425: chloroplast RNA processing | 5.04E-03 |
| 82 | GO:0006349: regulation of gene expression by genetic imprinting | 5.04E-03 |
| 83 | GO:0010048: vernalization response | 5.61E-03 |
| 84 | GO:0009926: auxin polar transport | 5.76E-03 |
| 85 | GO:0010072: primary shoot apical meristem specification | 6.20E-03 |
| 86 | GO:0006970: response to osmotic stress | 6.43E-03 |
| 87 | GO:0015706: nitrate transport | 6.81E-03 |
| 88 | GO:0008361: regulation of cell size | 6.81E-03 |
| 89 | GO:0009767: photosynthetic electron transport chain | 7.44E-03 |
| 90 | GO:0010102: lateral root morphogenesis | 7.44E-03 |
| 91 | GO:0010223: secondary shoot formation | 8.10E-03 |
| 92 | GO:0009266: response to temperature stimulus | 8.10E-03 |
| 93 | GO:0010020: chloroplast fission | 8.10E-03 |
| 94 | GO:0009909: regulation of flower development | 8.59E-03 |
| 95 | GO:0080188: RNA-directed DNA methylation | 8.77E-03 |
| 96 | GO:0010167: response to nitrate | 8.77E-03 |
| 97 | GO:0006071: glycerol metabolic process | 9.46E-03 |
| 98 | GO:0045892: negative regulation of transcription, DNA-templated | 9.88E-03 |
| 99 | GO:0080147: root hair cell development | 1.02E-02 |
| 100 | GO:0006338: chromatin remodeling | 1.02E-02 |
| 101 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.02E-02 |
| 102 | GO:0006825: copper ion transport | 1.09E-02 |
| 103 | GO:0006874: cellular calcium ion homeostasis | 1.09E-02 |
| 104 | GO:0006306: DNA methylation | 1.17E-02 |
| 105 | GO:0010082: regulation of root meristem growth | 1.32E-02 |
| 106 | GO:0001944: vasculature development | 1.32E-02 |
| 107 | GO:0071215: cellular response to abscisic acid stimulus | 1.32E-02 |
| 108 | GO:0009686: gibberellin biosynthetic process | 1.32E-02 |
| 109 | GO:0006397: mRNA processing | 1.33E-02 |
| 110 | GO:0010089: xylem development | 1.40E-02 |
| 111 | GO:0010584: pollen exine formation | 1.40E-02 |
| 112 | GO:0006284: base-excision repair | 1.40E-02 |
| 113 | GO:0009058: biosynthetic process | 1.46E-02 |
| 114 | GO:0070417: cellular response to cold | 1.48E-02 |
| 115 | GO:0010051: xylem and phloem pattern formation | 1.57E-02 |
| 116 | GO:0010087: phloem or xylem histogenesis | 1.57E-02 |
| 117 | GO:0042631: cellular response to water deprivation | 1.57E-02 |
| 118 | GO:0046323: glucose import | 1.65E-02 |
| 119 | GO:0009960: endosperm development | 1.65E-02 |
| 120 | GO:0009958: positive gravitropism | 1.65E-02 |
| 121 | GO:0007018: microtubule-based movement | 1.74E-02 |
| 122 | GO:0080156: mitochondrial mRNA modification | 1.92E-02 |
| 123 | GO:0071554: cell wall organization or biogenesis | 1.92E-02 |
| 124 | GO:0002229: defense response to oomycetes | 1.92E-02 |
| 125 | GO:0009630: gravitropism | 2.01E-02 |
| 126 | GO:0031047: gene silencing by RNA | 2.01E-02 |
| 127 | GO:0010090: trichome morphogenesis | 2.11E-02 |
| 128 | GO:0009567: double fertilization forming a zygote and endosperm | 2.20E-02 |
| 129 | GO:0008380: RNA splicing | 2.29E-02 |
| 130 | GO:0007267: cell-cell signaling | 2.30E-02 |
| 131 | GO:0010029: regulation of seed germination | 2.60E-02 |
| 132 | GO:0048481: plant ovule development | 3.02E-02 |
| 133 | GO:0048767: root hair elongation | 3.12E-02 |
| 134 | GO:0000160: phosphorelay signal transduction system | 3.12E-02 |
| 135 | GO:0006811: ion transport | 3.23E-02 |
| 136 | GO:0006355: regulation of transcription, DNA-templated | 3.53E-02 |
| 137 | GO:0080167: response to karrikin | 3.68E-02 |
| 138 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.80E-02 |
| 139 | GO:0006839: mitochondrial transport | 3.92E-02 |
| 140 | GO:0030001: metal ion transport | 3.92E-02 |
| 141 | GO:0008283: cell proliferation | 4.27E-02 |
| 142 | GO:0010114: response to red light | 4.27E-02 |
| 143 | GO:0009640: photomorphogenesis | 4.27E-02 |
| 144 | GO:0009636: response to toxic substance | 4.64E-02 |
| 145 | GO:0031347: regulation of defense response | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
| 2 | GO:0003727: single-stranded RNA binding | 8.79E-05 |
| 3 | GO:0004016: adenylate cyclase activity | 1.95E-04 |
| 4 | GO:0009672: auxin:proton symporter activity | 2.87E-04 |
| 5 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.38E-04 |
| 6 | GO:0008805: carbon-monoxide oxygenase activity | 4.38E-04 |
| 7 | GO:0009884: cytokinin receptor activity | 4.38E-04 |
| 8 | GO:0010329: auxin efflux transmembrane transporter activity | 5.09E-04 |
| 9 | GO:0032549: ribonucleoside binding | 7.14E-04 |
| 10 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 7.14E-04 |
| 11 | GO:0016805: dipeptidase activity | 7.14E-04 |
| 12 | GO:0005034: osmosensor activity | 7.14E-04 |
| 13 | GO:0016707: gibberellin 3-beta-dioxygenase activity | 7.14E-04 |
| 14 | GO:0004180: carboxypeptidase activity | 7.14E-04 |
| 15 | GO:0045548: phenylalanine ammonia-lyase activity | 7.14E-04 |
| 16 | GO:0003999: adenine phosphoribosyltransferase activity | 1.02E-03 |
| 17 | GO:0005354: galactose transmembrane transporter activity | 1.02E-03 |
| 18 | GO:0003690: double-stranded DNA binding | 1.13E-03 |
| 19 | GO:0005253: anion channel activity | 1.35E-03 |
| 20 | GO:0016279: protein-lysine N-methyltransferase activity | 1.35E-03 |
| 21 | GO:0010385: double-stranded methylated DNA binding | 1.35E-03 |
| 22 | GO:0004930: G-protein coupled receptor activity | 1.35E-03 |
| 23 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.72E-03 |
| 24 | GO:0019901: protein kinase binding | 1.76E-03 |
| 25 | GO:0031177: phosphopantetheine binding | 2.12E-03 |
| 26 | GO:0016208: AMP binding | 2.12E-03 |
| 27 | GO:0005247: voltage-gated chloride channel activity | 2.12E-03 |
| 28 | GO:0000035: acyl binding | 2.54E-03 |
| 29 | GO:0019900: kinase binding | 2.54E-03 |
| 30 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.54E-03 |
| 31 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 3.47E-03 |
| 32 | GO:0008173: RNA methyltransferase activity | 3.97E-03 |
| 33 | GO:0003697: single-stranded DNA binding | 4.47E-03 |
| 34 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 4.49E-03 |
| 35 | GO:0004673: protein histidine kinase activity | 5.61E-03 |
| 36 | GO:0008171: O-methyltransferase activity | 5.61E-03 |
| 37 | GO:0001054: RNA polymerase I activity | 6.20E-03 |
| 38 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.44E-03 |
| 39 | GO:0031072: heat shock protein binding | 7.44E-03 |
| 40 | GO:0000155: phosphorelay sensor kinase activity | 7.44E-03 |
| 41 | GO:0015114: phosphate ion transmembrane transporter activity | 7.44E-03 |
| 42 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 8.10E-03 |
| 43 | GO:0004970: ionotropic glutamate receptor activity | 8.77E-03 |
| 44 | GO:0005217: intracellular ligand-gated ion channel activity | 8.77E-03 |
| 45 | GO:0008134: transcription factor binding | 1.02E-02 |
| 46 | GO:0004871: signal transducer activity | 1.03E-02 |
| 47 | GO:0043424: protein histidine kinase binding | 1.09E-02 |
| 48 | GO:0004674: protein serine/threonine kinase activity | 1.29E-02 |
| 49 | GO:0019843: rRNA binding | 1.39E-02 |
| 50 | GO:0018024: histone-lysine N-methyltransferase activity | 1.48E-02 |
| 51 | GO:0004402: histone acetyltransferase activity | 1.57E-02 |
| 52 | GO:0008080: N-acetyltransferase activity | 1.65E-02 |
| 53 | GO:0005355: glucose transmembrane transporter activity | 1.74E-02 |
| 54 | GO:0050662: coenzyme binding | 1.74E-02 |
| 55 | GO:0004197: cysteine-type endopeptidase activity | 2.01E-02 |
| 56 | GO:0016759: cellulose synthase activity | 2.20E-02 |
| 57 | GO:0005200: structural constituent of cytoskeleton | 2.30E-02 |
| 58 | GO:0016413: O-acetyltransferase activity | 2.40E-02 |
| 59 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.23E-02 |
| 60 | GO:0004222: metalloendopeptidase activity | 3.23E-02 |
| 61 | GO:0003723: RNA binding | 3.33E-02 |
| 62 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.57E-02 |
| 63 | GO:0042393: histone binding | 3.92E-02 |
| 64 | GO:0003677: DNA binding | 4.61E-02 |