GO Enrichment Analysis of Co-expressed Genes with
AT5G49020
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 2 | GO:0050776: regulation of immune response | 0.00E+00 |
| 3 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 4 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 5 | GO:0030422: production of siRNA involved in RNA interference | 1.36E-06 |
| 6 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.55E-06 |
| 7 | GO:0042759: long-chain fatty acid biosynthetic process | 8.43E-05 |
| 8 | GO:0010342: endosperm cellularization | 8.43E-05 |
| 9 | GO:0034757: negative regulation of iron ion transport | 8.43E-05 |
| 10 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 8.43E-05 |
| 11 | GO:0070981: L-asparagine biosynthetic process | 2.00E-04 |
| 12 | GO:0010271: regulation of chlorophyll catabolic process | 2.00E-04 |
| 13 | GO:0006529: asparagine biosynthetic process | 2.00E-04 |
| 14 | GO:0010254: nectary development | 2.00E-04 |
| 15 | GO:0010434: bract formation | 2.00E-04 |
| 16 | GO:0048439: flower morphogenesis | 2.00E-04 |
| 17 | GO:0006306: DNA methylation | 3.11E-04 |
| 18 | GO:0010589: leaf proximal/distal pattern formation | 3.35E-04 |
| 19 | GO:0042780: tRNA 3'-end processing | 3.35E-04 |
| 20 | GO:0090153: regulation of sphingolipid biosynthetic process | 3.35E-04 |
| 21 | GO:0009954: proximal/distal pattern formation | 3.35E-04 |
| 22 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 3.35E-04 |
| 23 | GO:0071705: nitrogen compound transport | 3.35E-04 |
| 24 | GO:0080117: secondary growth | 3.35E-04 |
| 25 | GO:0009558: embryo sac cellularization | 4.84E-04 |
| 26 | GO:1902476: chloride transmembrane transport | 4.84E-04 |
| 27 | GO:0051513: regulation of monopolar cell growth | 4.84E-04 |
| 28 | GO:0019048: modulation by virus of host morphology or physiology | 4.84E-04 |
| 29 | GO:0031048: chromatin silencing by small RNA | 4.84E-04 |
| 30 | GO:0007018: microtubule-based movement | 5.47E-04 |
| 31 | GO:0006479: protein methylation | 6.44E-04 |
| 32 | GO:0071249: cellular response to nitrate | 6.44E-04 |
| 33 | GO:0035279: mRNA cleavage involved in gene silencing by miRNA | 6.44E-04 |
| 34 | GO:0000914: phragmoplast assembly | 6.44E-04 |
| 35 | GO:0051567: histone H3-K9 methylation | 6.44E-04 |
| 36 | GO:2000038: regulation of stomatal complex development | 6.44E-04 |
| 37 | GO:0032876: negative regulation of DNA endoreduplication | 8.14E-04 |
| 38 | GO:0030308: negative regulation of cell growth | 8.14E-04 |
| 39 | GO:0009616: virus induced gene silencing | 8.14E-04 |
| 40 | GO:0006468: protein phosphorylation | 8.42E-04 |
| 41 | GO:0000910: cytokinesis | 8.44E-04 |
| 42 | GO:0016458: gene silencing | 9.94E-04 |
| 43 | GO:0035194: posttranscriptional gene silencing by RNA | 9.94E-04 |
| 44 | GO:0045962: positive regulation of development, heterochronic | 9.94E-04 |
| 45 | GO:0048831: regulation of shoot system development | 9.94E-04 |
| 46 | GO:0048509: regulation of meristem development | 1.18E-03 |
| 47 | GO:0009099: valine biosynthetic process | 1.18E-03 |
| 48 | GO:2000037: regulation of stomatal complex patterning | 1.18E-03 |
| 49 | GO:0010067: procambium histogenesis | 1.18E-03 |
| 50 | GO:0009082: branched-chain amino acid biosynthetic process | 1.18E-03 |
| 51 | GO:0035196: production of miRNAs involved in gene silencing by miRNA | 1.39E-03 |
| 52 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 1.39E-03 |
| 53 | GO:0006955: immune response | 1.39E-03 |
| 54 | GO:0006821: chloride transport | 1.39E-03 |
| 55 | GO:0030162: regulation of proteolysis | 1.60E-03 |
| 56 | GO:0009097: isoleucine biosynthetic process | 1.83E-03 |
| 57 | GO:0007389: pattern specification process | 1.83E-03 |
| 58 | GO:0010093: specification of floral organ identity | 1.83E-03 |
| 59 | GO:0009827: plant-type cell wall modification | 1.83E-03 |
| 60 | GO:0001510: RNA methylation | 1.83E-03 |
| 61 | GO:0000373: Group II intron splicing | 2.06E-03 |
| 62 | GO:0006349: regulation of gene expression by genetic imprinting | 2.30E-03 |
| 63 | GO:0010048: vernalization response | 2.56E-03 |
| 64 | GO:0009909: regulation of flower development | 2.73E-03 |
| 65 | GO:0048229: gametophyte development | 2.82E-03 |
| 66 | GO:0009793: embryo development ending in seed dormancy | 3.08E-03 |
| 67 | GO:0008361: regulation of cell size | 3.09E-03 |
| 68 | GO:0010582: floral meristem determinacy | 3.09E-03 |
| 69 | GO:0015706: nitrate transport | 3.09E-03 |
| 70 | GO:0071555: cell wall organization | 3.29E-03 |
| 71 | GO:0009767: photosynthetic electron transport chain | 3.37E-03 |
| 72 | GO:0010223: secondary shoot formation | 3.66E-03 |
| 73 | GO:0006541: glutamine metabolic process | 3.66E-03 |
| 74 | GO:0010167: response to nitrate | 3.95E-03 |
| 75 | GO:0010025: wax biosynthetic process | 4.26E-03 |
| 76 | GO:0009944: polarity specification of adaxial/abaxial axis | 4.57E-03 |
| 77 | GO:0006825: copper ion transport | 4.89E-03 |
| 78 | GO:0006418: tRNA aminoacylation for protein translation | 4.89E-03 |
| 79 | GO:0016998: cell wall macromolecule catabolic process | 5.22E-03 |
| 80 | GO:0040008: regulation of growth | 5.74E-03 |
| 81 | GO:0001944: vasculature development | 5.89E-03 |
| 82 | GO:0010227: floral organ abscission | 5.89E-03 |
| 83 | GO:0071215: cellular response to abscisic acid stimulus | 5.89E-03 |
| 84 | GO:0009416: response to light stimulus | 6.01E-03 |
| 85 | GO:0010089: xylem development | 6.24E-03 |
| 86 | GO:0006284: base-excision repair | 6.24E-03 |
| 87 | GO:0070417: cellular response to cold | 6.60E-03 |
| 88 | GO:0000271: polysaccharide biosynthetic process | 6.97E-03 |
| 89 | GO:0010087: phloem or xylem histogenesis | 6.97E-03 |
| 90 | GO:0042631: cellular response to water deprivation | 6.97E-03 |
| 91 | GO:0048868: pollen tube development | 7.34E-03 |
| 92 | GO:0006342: chromatin silencing | 7.34E-03 |
| 93 | GO:0009960: endosperm development | 7.34E-03 |
| 94 | GO:0045489: pectin biosynthetic process | 7.34E-03 |
| 95 | GO:0010305: leaf vascular tissue pattern formation | 7.34E-03 |
| 96 | GO:0048544: recognition of pollen | 7.72E-03 |
| 97 | GO:0009646: response to absence of light | 7.72E-03 |
| 98 | GO:0010583: response to cyclopentenone | 8.90E-03 |
| 99 | GO:0031047: gene silencing by RNA | 8.90E-03 |
| 100 | GO:0010090: trichome morphogenesis | 9.30E-03 |
| 101 | GO:0009567: double fertilization forming a zygote and endosperm | 9.72E-03 |
| 102 | GO:0010252: auxin homeostasis | 9.72E-03 |
| 103 | GO:0071805: potassium ion transmembrane transport | 1.01E-02 |
| 104 | GO:0051607: defense response to virus | 1.06E-02 |
| 105 | GO:0010029: regulation of seed germination | 1.14E-02 |
| 106 | GO:0009816: defense response to bacterium, incompatible interaction | 1.14E-02 |
| 107 | GO:0010411: xyloglucan metabolic process | 1.23E-02 |
| 108 | GO:0000160: phosphorelay signal transduction system | 1.37E-02 |
| 109 | GO:0006811: ion transport | 1.42E-02 |
| 110 | GO:0016051: carbohydrate biosynthetic process | 1.57E-02 |
| 111 | GO:0006351: transcription, DNA-templated | 1.73E-02 |
| 112 | GO:0009926: auxin polar transport | 1.88E-02 |
| 113 | GO:0042546: cell wall biogenesis | 1.93E-02 |
| 114 | GO:0009636: response to toxic substance | 2.04E-02 |
| 115 | GO:0009965: leaf morphogenesis | 2.04E-02 |
| 116 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 2.15E-02 |
| 117 | GO:0009664: plant-type cell wall organization | 2.21E-02 |
| 118 | GO:0042538: hyperosmotic salinity response | 2.21E-02 |
| 119 | GO:0009736: cytokinin-activated signaling pathway | 2.32E-02 |
| 120 | GO:0006813: potassium ion transport | 2.32E-02 |
| 121 | GO:0009734: auxin-activated signaling pathway | 2.41E-02 |
| 122 | GO:0006417: regulation of translation | 2.50E-02 |
| 123 | GO:0006096: glycolytic process | 2.62E-02 |
| 124 | GO:0048316: seed development | 2.68E-02 |
| 125 | GO:0016569: covalent chromatin modification | 2.86E-02 |
| 126 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004455: ketol-acid reductoisomerase activity | 0.00E+00 |
| 2 | GO:0032549: ribonucleoside binding | 1.47E-06 |
| 3 | GO:0003777: microtubule motor activity | 1.78E-05 |
| 4 | GO:0004674: protein serine/threonine kinase activity | 5.90E-05 |
| 5 | GO:0008158: hedgehog receptor activity | 8.43E-05 |
| 6 | GO:0042834: peptidoglycan binding | 8.43E-05 |
| 7 | GO:0004008: copper-exporting ATPase activity | 8.43E-05 |
| 8 | GO:0004071: aspartate-ammonia ligase activity | 8.43E-05 |
| 9 | GO:0016274: protein-arginine N-methyltransferase activity | 8.43E-05 |
| 10 | GO:0008017: microtubule binding | 9.05E-05 |
| 11 | GO:0001054: RNA polymerase I activity | 1.18E-04 |
| 12 | GO:0009884: cytokinin receptor activity | 2.00E-04 |
| 13 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 2.00E-04 |
| 14 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 3.35E-04 |
| 15 | GO:0005034: osmosensor activity | 3.35E-04 |
| 16 | GO:0017150: tRNA dihydrouridine synthase activity | 3.35E-04 |
| 17 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 3.35E-04 |
| 18 | GO:0035197: siRNA binding | 4.84E-04 |
| 19 | GO:0005253: anion channel activity | 6.44E-04 |
| 20 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 6.44E-04 |
| 21 | GO:0008725: DNA-3-methyladenine glycosylase activity | 8.14E-04 |
| 22 | GO:0005524: ATP binding | 9.60E-04 |
| 23 | GO:0005247: voltage-gated chloride channel activity | 9.94E-04 |
| 24 | GO:0019900: kinase binding | 1.18E-03 |
| 25 | GO:0004672: protein kinase activity | 1.39E-03 |
| 26 | GO:0008173: RNA methyltransferase activity | 1.83E-03 |
| 27 | GO:0005375: copper ion transmembrane transporter activity | 1.83E-03 |
| 28 | GO:0009672: auxin:proton symporter activity | 2.30E-03 |
| 29 | GO:0004871: signal transducer activity | 2.36E-03 |
| 30 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.47E-03 |
| 31 | GO:0004673: protein histidine kinase activity | 2.56E-03 |
| 32 | GO:0008171: O-methyltransferase activity | 2.56E-03 |
| 33 | GO:0004521: endoribonuclease activity | 3.09E-03 |
| 34 | GO:0000155: phosphorelay sensor kinase activity | 3.37E-03 |
| 35 | GO:0010329: auxin efflux transmembrane transporter activity | 3.37E-03 |
| 36 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 3.37E-03 |
| 37 | GO:0004252: serine-type endopeptidase activity | 4.84E-03 |
| 38 | GO:0043424: protein histidine kinase binding | 4.89E-03 |
| 39 | GO:0015079: potassium ion transmembrane transporter activity | 4.89E-03 |
| 40 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 5.55E-03 |
| 41 | GO:0003727: single-stranded RNA binding | 6.24E-03 |
| 42 | GO:0004812: aminoacyl-tRNA ligase activity | 6.60E-03 |
| 43 | GO:0018024: histone-lysine N-methyltransferase activity | 6.60E-03 |
| 44 | GO:0005199: structural constituent of cell wall | 7.34E-03 |
| 45 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 8.50E-03 |
| 46 | GO:0016759: cellulose synthase activity | 9.72E-03 |
| 47 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.23E-02 |
| 48 | GO:0008236: serine-type peptidase activity | 1.28E-02 |
| 49 | GO:0042803: protein homodimerization activity | 1.45E-02 |
| 50 | GO:0003697: single-stranded DNA binding | 1.57E-02 |
| 51 | GO:0051539: 4 iron, 4 sulfur cluster binding | 1.72E-02 |
| 52 | GO:0031625: ubiquitin protein ligase binding | 2.50E-02 |
| 53 | GO:0005515: protein binding | 2.53E-02 |
| 54 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 2.68E-02 |
| 55 | GO:0016758: transferase activity, transferring hexosyl groups | 3.44E-02 |
| 56 | GO:0016301: kinase activity | 3.63E-02 |
| 57 | GO:0005507: copper ion binding | 4.31E-02 |