Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G47900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0031116: positive regulation of microtubule polymerization0.00E+00
3GO:0010068: protoderm histogenesis0.00E+00
4GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:0042817: pyridoxal metabolic process0.00E+00
7GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
8GO:2001294: malonyl-CoA catabolic process0.00E+00
9GO:0015843: methylammonium transport0.00E+00
10GO:0031222: arabinan catabolic process0.00E+00
11GO:0070979: protein K11-linked ubiquitination0.00E+00
12GO:0043488: regulation of mRNA stability0.00E+00
13GO:0061157: mRNA destabilization0.00E+00
14GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
15GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
16GO:0031054: pre-miRNA processing0.00E+00
17GO:0009733: response to auxin9.06E-09
18GO:0040008: regulation of growth1.14E-06
19GO:0009734: auxin-activated signaling pathway9.31E-06
20GO:0046620: regulation of organ growth4.88E-05
21GO:2000012: regulation of auxin polar transport2.73E-04
22GO:0005992: trehalose biosynthetic process5.00E-04
23GO:0030488: tRNA methylation5.67E-04
24GO:0042372: phylloquinone biosynthetic process5.67E-04
25GO:0071028: nuclear mRNA surveillance6.31E-04
26GO:0043266: regulation of potassium ion transport6.31E-04
27GO:0006659: phosphatidylserine biosynthetic process6.31E-04
28GO:0042371: vitamin K biosynthetic process6.31E-04
29GO:0043087: regulation of GTPase activity6.31E-04
30GO:2000021: regulation of ion homeostasis6.31E-04
31GO:0034080: CENP-A containing nucleosome assembly6.31E-04
32GO:0000066: mitochondrial ornithine transport6.31E-04
33GO:1902458: positive regulation of stomatal opening6.31E-04
34GO:0051418: microtubule nucleation by microtubule organizing center6.31E-04
35GO:0051171: regulation of nitrogen compound metabolic process6.31E-04
36GO:0007275: multicellular organism development1.07E-03
37GO:0032544: plastid translation1.10E-03
38GO:0009658: chloroplast organization1.15E-03
39GO:0000373: Group II intron splicing1.31E-03
40GO:0034475: U4 snRNA 3'-end processing1.36E-03
41GO:0033566: gamma-tubulin complex localization1.36E-03
42GO:1900871: chloroplast mRNA modification1.36E-03
43GO:1900033: negative regulation of trichome patterning1.36E-03
44GO:0006423: cysteinyl-tRNA aminoacylation1.36E-03
45GO:0031125: rRNA 3'-end processing1.36E-03
46GO:1903426: regulation of reactive oxygen species biosynthetic process1.36E-03
47GO:0015804: neutral amino acid transport1.36E-03
48GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.36E-03
49GO:0006739: NADP metabolic process1.36E-03
50GO:1900865: chloroplast RNA modification1.55E-03
51GO:0009638: phototropism1.55E-03
52GO:0045036: protein targeting to chloroplast1.81E-03
53GO:1901657: glycosyl compound metabolic process1.87E-03
54GO:0006415: translational termination2.10E-03
55GO:0009684: indoleacetic acid biosynthetic process2.10E-03
56GO:0019419: sulfate reduction2.24E-03
57GO:0010589: leaf proximal/distal pattern formation2.24E-03
58GO:0031145: anaphase-promoting complex-dependent catabolic process2.24E-03
59GO:0080055: low-affinity nitrate transport2.24E-03
60GO:0051604: protein maturation2.24E-03
61GO:0006753: nucleoside phosphate metabolic process2.24E-03
62GO:0001578: microtubule bundle formation2.24E-03
63GO:0045493: xylan catabolic process2.24E-03
64GO:0006760: folic acid-containing compound metabolic process2.24E-03
65GO:0007052: mitotic spindle organization2.24E-03
66GO:0016075: rRNA catabolic process2.24E-03
67GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'2.24E-03
68GO:0051127: positive regulation of actin nucleation2.24E-03
69GO:0010027: thylakoid membrane organization2.54E-03
70GO:0048645: animal organ formation3.25E-03
71GO:0008615: pyridoxine biosynthetic process3.25E-03
72GO:0044211: CTP salvage3.25E-03
73GO:0010255: glucose mediated signaling pathway3.25E-03
74GO:0015696: ammonium transport3.25E-03
75GO:0090307: mitotic spindle assembly3.25E-03
76GO:0032981: mitochondrial respiratory chain complex I assembly3.25E-03
77GO:2000904: regulation of starch metabolic process3.25E-03
78GO:0006164: purine nucleotide biosynthetic process3.25E-03
79GO:0006168: adenine salvage3.25E-03
80GO:0043572: plastid fission3.25E-03
81GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center3.25E-03
82GO:0034508: centromere complex assembly3.25E-03
83GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.25E-03
84GO:0006166: purine ribonucleoside salvage3.25E-03
85GO:0007231: osmosensory signaling pathway3.25E-03
86GO:0030071: regulation of mitotic metaphase/anaphase transition3.25E-03
87GO:0051639: actin filament network formation3.25E-03
88GO:0009226: nucleotide-sugar biosynthetic process3.25E-03
89GO:0090351: seedling development3.47E-03
90GO:0019344: cysteine biosynthetic process4.30E-03
91GO:0035279: mRNA cleavage involved in gene silencing by miRNA4.38E-03
92GO:0046656: folic acid biosynthetic process4.38E-03
93GO:0072488: ammonium transmembrane transport4.38E-03
94GO:0022622: root system development4.38E-03
95GO:0006021: inositol biosynthetic process4.38E-03
96GO:0007020: microtubule nucleation4.38E-03
97GO:0006734: NADH metabolic process4.38E-03
98GO:0044206: UMP salvage4.38E-03
99GO:0048629: trichome patterning4.38E-03
100GO:0051764: actin crosslink formation4.38E-03
101GO:0051322: anaphase4.38E-03
102GO:0033500: carbohydrate homeostasis4.38E-03
103GO:0046785: microtubule polymerization5.63E-03
104GO:0010236: plastoquinone biosynthetic process5.63E-03
105GO:0045038: protein import into chloroplast thylakoid membrane5.63E-03
106GO:0044209: AMP salvage5.63E-03
107GO:0010158: abaxial cell fate specification5.63E-03
108GO:0032876: negative regulation of DNA endoreduplication5.63E-03
109GO:0006839: mitochondrial transport5.73E-03
110GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.70E-03
111GO:0009926: auxin polar transport6.71E-03
112GO:0016554: cytidine to uridine editing6.99E-03
113GO:0009920: cell plate formation involved in plant-type cell wall biogenesis6.99E-03
114GO:0009117: nucleotide metabolic process6.99E-03
115GO:0006206: pyrimidine nucleobase metabolic process6.99E-03
116GO:0032973: amino acid export6.99E-03
117GO:0018258: protein O-linked glycosylation via hydroxyproline6.99E-03
118GO:0000741: karyogamy6.99E-03
119GO:0010405: arabinogalactan protein metabolic process6.99E-03
120GO:0010264: myo-inositol hexakisphosphate biosynthetic process6.99E-03
121GO:0006655: phosphatidylglycerol biosynthetic process6.99E-03
122GO:0009789: positive regulation of abscisic acid-activated signaling pathway7.39E-03
123GO:0010087: phloem or xylem histogenesis7.99E-03
124GO:0048280: vesicle fusion with Golgi apparatus8.45E-03
125GO:0046654: tetrahydrofolate biosynthetic process8.45E-03
126GO:0080086: stamen filament development8.45E-03
127GO:0009648: photoperiodism8.45E-03
128GO:0009958: positive gravitropism8.62E-03
129GO:0007166: cell surface receptor signaling pathway9.88E-03
130GO:0008654: phospholipid biosynthetic process9.97E-03
131GO:0015937: coenzyme A biosynthetic process1.00E-02
132GO:0010050: vegetative phase change1.00E-02
133GO:0030307: positive regulation of cell growth1.00E-02
134GO:0035196: production of miRNAs involved in gene silencing by miRNA1.00E-02
135GO:0032880: regulation of protein localization1.00E-02
136GO:0048528: post-embryonic root development1.00E-02
137GO:0009772: photosynthetic electron transport in photosystem II1.00E-02
138GO:0043090: amino acid import1.00E-02
139GO:0009850: auxin metabolic process1.17E-02
140GO:0009787: regulation of abscisic acid-activated signaling pathway1.17E-02
141GO:0009690: cytokinin metabolic process1.17E-02
142GO:0010078: maintenance of root meristem identity1.17E-02
143GO:0009704: de-etiolation1.17E-02
144GO:0032875: regulation of DNA endoreduplication1.17E-02
145GO:0042255: ribosome assembly1.17E-02
146GO:0006353: DNA-templated transcription, termination1.17E-02
147GO:2000070: regulation of response to water deprivation1.17E-02
148GO:0070413: trehalose metabolism in response to stress1.17E-02
149GO:0016042: lipid catabolic process1.19E-02
150GO:0043562: cellular response to nitrogen levels1.34E-02
151GO:0006002: fructose 6-phosphate metabolic process1.34E-02
152GO:0009740: gibberellic acid mediated signaling pathway1.43E-02
153GO:0080144: amino acid homeostasis1.53E-02
154GO:0006189: 'de novo' IMP biosynthetic process1.53E-02
155GO:0000902: cell morphogenesis1.53E-02
156GO:0015780: nucleotide-sugar transport1.53E-02
157GO:0009051: pentose-phosphate shunt, oxidative branch1.53E-02
158GO:0010380: regulation of chlorophyll biosynthetic process1.72E-02
159GO:0071577: zinc II ion transmembrane transport1.72E-02
160GO:0010267: production of ta-siRNAs involved in RNA interference1.72E-02
161GO:0042761: very long-chain fatty acid biosynthetic process1.72E-02
162GO:0009627: systemic acquired resistance1.74E-02
163GO:0010411: xyloglucan metabolic process1.83E-02
164GO:0071555: cell wall organization1.83E-02
165GO:0006535: cysteine biosynthetic process from serine1.92E-02
166GO:0006896: Golgi to vacuole transport1.92E-02
167GO:0000103: sulfate assimilation1.92E-02
168GO:0006949: syncytium formation1.92E-02
169GO:0009299: mRNA transcription1.92E-02
170GO:0006816: calcium ion transport2.13E-02
171GO:0009773: photosynthetic electron transport in photosystem I2.13E-02
172GO:1903507: negative regulation of nucleic acid-templated transcription2.13E-02
173GO:0010152: pollen maturation2.34E-02
174GO:0016024: CDP-diacylglycerol biosynthetic process2.34E-02
175GO:0045037: protein import into chloroplast stroma2.34E-02
176GO:0010582: floral meristem determinacy2.34E-02
177GO:0048527: lateral root development2.35E-02
178GO:0006865: amino acid transport2.46E-02
179GO:0010588: cotyledon vascular tissue pattern formation2.57E-02
180GO:0010628: positive regulation of gene expression2.57E-02
181GO:0009785: blue light signaling pathway2.57E-02
182GO:0006006: glucose metabolic process2.57E-02
183GO:0030036: actin cytoskeleton organization2.57E-02
184GO:0009725: response to hormone2.57E-02
185GO:0010020: chloroplast fission2.80E-02
186GO:0048467: gynoecium development2.80E-02
187GO:0019853: L-ascorbic acid biosynthetic process3.04E-02
188GO:0010030: positive regulation of seed germination3.04E-02
189GO:0070588: calcium ion transmembrane transport3.04E-02
190GO:0006631: fatty acid metabolic process3.07E-02
191GO:0010025: wax biosynthetic process3.28E-02
192GO:0009833: plant-type primary cell wall biogenesis3.28E-02
193GO:0006833: water transport3.28E-02
194GO:0006468: protein phosphorylation3.28E-02
195GO:0008283: cell proliferation3.33E-02
196GO:0030150: protein import into mitochondrial matrix3.53E-02
197GO:0051017: actin filament bundle assembly3.53E-02
198GO:0007010: cytoskeleton organization3.53E-02
199GO:0010187: negative regulation of seed germination3.53E-02
200GO:0006418: tRNA aminoacylation for protein translation3.79E-02
201GO:0043622: cortical microtubule organization3.79E-02
202GO:0006810: transport3.99E-02
203GO:0003333: amino acid transmembrane transport4.05E-02
204GO:0016998: cell wall macromolecule catabolic process4.05E-02
205GO:0005975: carbohydrate metabolic process4.26E-02
206GO:2000022: regulation of jasmonic acid mediated signaling pathway4.32E-02
207GO:0035428: hexose transmembrane transport4.32E-02
208GO:0006730: one-carbon metabolic process4.32E-02
209GO:0031348: negative regulation of defense response4.32E-02
210GO:0080092: regulation of pollen tube growth4.32E-02
211GO:0009585: red, far-red light phototransduction4.47E-02
212GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.60E-02
213GO:0010082: regulation of root meristem growth4.60E-02
214GO:0009686: gibberellin biosynthetic process4.60E-02
215GO:0006012: galactose metabolic process4.60E-02
216GO:0009306: protein secretion4.88E-02
217GO:0010214: seed coat development4.88E-02
RankGO TermAdjusted P value
1GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
2GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity0.00E+00
3GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
4GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:0004056: argininosuccinate lyase activity0.00E+00
7GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
8GO:0043864: indoleacetamide hydrolase activity0.00E+00
9GO:0010349: L-galactose dehydrogenase activity0.00E+00
10GO:0004805: trehalose-phosphatase activity1.50E-04
11GO:0046556: alpha-L-arabinofuranosidase activity2.03E-04
12GO:0005290: L-histidine transmembrane transporter activity6.31E-04
13GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.31E-04
14GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.31E-04
15GO:0052857: NADPHX epimerase activity6.31E-04
16GO:0052856: NADHX epimerase activity6.31E-04
17GO:0050139: nicotinate-N-glucosyltransferase activity6.31E-04
18GO:0010945: CoA pyrophosphatase activity6.31E-04
19GO:0004733: pyridoxamine-phosphate oxidase activity6.31E-04
20GO:0051777: ent-kaurenoate oxidase activity6.31E-04
21GO:0016788: hydrolase activity, acting on ester bonds1.19E-03
22GO:0003747: translation release factor activity1.31E-03
23GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.36E-03
24GO:0004150: dihydroneopterin aldolase activity1.36E-03
25GO:0000064: L-ornithine transmembrane transporter activity1.36E-03
26GO:0004512: inositol-3-phosphate synthase activity1.36E-03
27GO:0015172: acidic amino acid transmembrane transporter activity1.36E-03
28GO:0050017: L-3-cyanoalanine synthase activity1.36E-03
29GO:0017118: lipoyltransferase activity1.36E-03
30GO:0043425: bHLH transcription factor binding1.36E-03
31GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.36E-03
32GO:0009977: proton motive force dependent protein transmembrane transporter activity1.36E-03
33GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.36E-03
34GO:0102083: 7,8-dihydromonapterin aldolase activity1.36E-03
35GO:0009973: adenylyl-sulfate reductase activity1.36E-03
36GO:0004817: cysteine-tRNA ligase activity1.36E-03
37GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.36E-03
38GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.36E-03
39GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.76E-03
40GO:0070330: aromatase activity2.24E-03
41GO:0004557: alpha-galactosidase activity2.24E-03
42GO:0052692: raffinose alpha-galactosidase activity2.24E-03
43GO:0070180: large ribosomal subunit rRNA binding2.24E-03
44GO:0080054: low-affinity nitrate transmembrane transporter activity2.24E-03
45GO:0102483: scopolin beta-glucosidase activity3.13E-03
46GO:0015175: neutral amino acid transmembrane transporter activity3.25E-03
47GO:0003999: adenine phosphoribosyltransferase activity3.25E-03
48GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity3.25E-03
49GO:0016149: translation release factor activity, codon specific3.25E-03
50GO:0015181: arginine transmembrane transporter activity3.25E-03
51GO:0035198: miRNA binding3.25E-03
52GO:0015189: L-lysine transmembrane transporter activity3.25E-03
53GO:0035529: NADH pyrophosphatase activity3.25E-03
54GO:0009044: xylan 1,4-beta-xylosidase activity4.38E-03
55GO:0043015: gamma-tubulin binding4.38E-03
56GO:0004659: prenyltransferase activity4.38E-03
57GO:0004845: uracil phosphoribosyltransferase activity4.38E-03
58GO:0004345: glucose-6-phosphate dehydrogenase activity4.38E-03
59GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.38E-03
60GO:0080032: methyl jasmonate esterase activity4.38E-03
61GO:0004176: ATP-dependent peptidase activity5.22E-03
62GO:0008422: beta-glucosidase activity5.42E-03
63GO:0016846: carbon-sulfur lyase activity5.63E-03
64GO:0018685: alkane 1-monooxygenase activity5.63E-03
65GO:0004040: amidase activity5.63E-03
66GO:0003727: single-stranded RNA binding6.81E-03
67GO:0000210: NAD+ diphosphatase activity6.99E-03
68GO:0016208: AMP binding6.99E-03
69GO:0016462: pyrophosphatase activity6.99E-03
70GO:0042578: phosphoric ester hydrolase activity6.99E-03
71GO:0008519: ammonium transmembrane transporter activity6.99E-03
72GO:0004605: phosphatidate cytidylyltransferase activity6.99E-03
73GO:1990714: hydroxyproline O-galactosyltransferase activity6.99E-03
74GO:0052689: carboxylic ester hydrolase activity7.52E-03
75GO:0003730: mRNA 3'-UTR binding8.45E-03
76GO:0004723: calcium-dependent protein serine/threonine phosphatase activity8.45E-03
77GO:0004124: cysteine synthase activity8.45E-03
78GO:0008195: phosphatidate phosphatase activity8.45E-03
79GO:0004849: uridine kinase activity8.45E-03
80GO:0008536: Ran GTPase binding8.62E-03
81GO:0010181: FMN binding9.28E-03
82GO:0019899: enzyme binding1.00E-02
83GO:0003872: 6-phosphofructokinase activity1.00E-02
84GO:0005338: nucleotide-sugar transmembrane transporter activity1.00E-02
85GO:0015171: amino acid transmembrane transporter activity1.12E-02
86GO:0043022: ribosome binding1.17E-02
87GO:0004033: aldo-keto reductase (NADP) activity1.17E-02
88GO:0044212: transcription regulatory region DNA binding1.83E-02
89GO:0008236: serine-type peptidase activity1.93E-02
90GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.03E-02
91GO:0008794: arsenate reductase (glutaredoxin) activity2.13E-02
92GO:0008327: methyl-CpG binding2.13E-02
93GO:0047372: acylglycerol lipase activity2.13E-02
94GO:0000175: 3'-5'-exoribonuclease activity2.57E-02
95GO:0004022: alcohol dehydrogenase (NAD) activity2.57E-02
96GO:0015266: protein channel activity2.57E-02
97GO:0004089: carbonate dehydratase activity2.57E-02
98GO:0031072: heat shock protein binding2.57E-02
99GO:0005262: calcium channel activity2.57E-02
100GO:0009982: pseudouridine synthase activity2.57E-02
101GO:0003725: double-stranded RNA binding2.57E-02
102GO:0008083: growth factor activity2.80E-02
103GO:0008017: microtubule binding3.26E-02
104GO:0102336: 3-oxo-arachidoyl-CoA synthase activity3.28E-02
105GO:0102337: 3-oxo-cerotoyl-CoA synthase activity3.28E-02
106GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity3.28E-02
107GO:0005528: FK506 binding3.53E-02
108GO:0003714: transcription corepressor activity3.53E-02
109GO:0005385: zinc ion transmembrane transporter activity3.53E-02
110GO:0043621: protein self-association3.60E-02
111GO:0016301: kinase activity3.73E-02
112GO:0008324: cation transmembrane transporter activity3.79E-02
113GO:0051087: chaperone binding3.79E-02
114GO:0003964: RNA-directed DNA polymerase activity4.05E-02
115GO:0019706: protein-cysteine S-palmitoyltransferase activity4.05E-02
116GO:0008408: 3'-5' exonuclease activity4.05E-02
117GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.32E-02
118GO:0016760: cellulose synthase (UDP-forming) activity4.60E-02
119GO:0030570: pectate lyase activity4.60E-02
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Gene type



Gene DE type