GO Enrichment Analysis of Co-expressed Genes with
AT5G47840
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1903508: positive regulation of nucleic acid-templated transcription | 0.00E+00 |
| 2 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 3 | GO:0042407: cristae formation | 0.00E+00 |
| 4 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 5 | GO:0017038: protein import | 0.00E+00 |
| 6 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 7 | GO:0042817: pyridoxal metabolic process | 0.00E+00 |
| 8 | GO:0015995: chlorophyll biosynthetic process | 1.83E-05 |
| 9 | GO:0010190: cytochrome b6f complex assembly | 5.77E-05 |
| 10 | GO:0030488: tRNA methylation | 8.05E-05 |
| 11 | GO:0006659: phosphatidylserine biosynthetic process | 1.77E-04 |
| 12 | GO:2000021: regulation of ion homeostasis | 1.77E-04 |
| 13 | GO:1902458: positive regulation of stomatal opening | 1.77E-04 |
| 14 | GO:0048363: mucilage pectin metabolic process | 1.77E-04 |
| 15 | GO:1902478: negative regulation of defense response to bacterium, incompatible interaction | 1.77E-04 |
| 16 | GO:0031426: polycistronic mRNA processing | 1.77E-04 |
| 17 | GO:0043489: RNA stabilization | 1.77E-04 |
| 18 | GO:0071028: nuclear mRNA surveillance | 1.77E-04 |
| 19 | GO:0043266: regulation of potassium ion transport | 1.77E-04 |
| 20 | GO:0010206: photosystem II repair | 2.09E-04 |
| 21 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.95E-04 |
| 22 | GO:0090342: regulation of cell aging | 4.01E-04 |
| 23 | GO:0071668: plant-type cell wall assembly | 4.01E-04 |
| 24 | GO:0080183: response to photooxidative stress | 4.01E-04 |
| 25 | GO:0031125: rRNA 3'-end processing | 4.01E-04 |
| 26 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 4.01E-04 |
| 27 | GO:0071051: polyadenylation-dependent snoRNA 3'-end processing | 4.01E-04 |
| 28 | GO:0006739: NADP metabolic process | 4.01E-04 |
| 29 | GO:0034475: U4 snRNA 3'-end processing | 4.01E-04 |
| 30 | GO:0006423: cysteinyl-tRNA aminoacylation | 4.01E-04 |
| 31 | GO:0006435: threonyl-tRNA aminoacylation | 4.01E-04 |
| 32 | GO:0018026: peptidyl-lysine monomethylation | 4.01E-04 |
| 33 | GO:0010207: photosystem II assembly | 5.04E-04 |
| 34 | GO:0000913: preprophase band assembly | 6.55E-04 |
| 35 | GO:0016075: rRNA catabolic process | 6.55E-04 |
| 36 | GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 6.55E-04 |
| 37 | GO:0031022: nuclear migration along microfilament | 6.55E-04 |
| 38 | GO:0034051: negative regulation of plant-type hypersensitive response | 6.55E-04 |
| 39 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.34E-04 |
| 40 | GO:0010371: regulation of gibberellin biosynthetic process | 9.34E-04 |
| 41 | GO:0009102: biotin biosynthetic process | 9.34E-04 |
| 42 | GO:2001289: lipid X metabolic process | 9.34E-04 |
| 43 | GO:0010239: chloroplast mRNA processing | 9.34E-04 |
| 44 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 9.34E-04 |
| 45 | GO:0008615: pyridoxine biosynthetic process | 9.34E-04 |
| 46 | GO:0006734: NADH metabolic process | 1.24E-03 |
| 47 | GO:0010109: regulation of photosynthesis | 1.24E-03 |
| 48 | GO:2000306: positive regulation of photomorphogenesis | 1.24E-03 |
| 49 | GO:0022622: root system development | 1.24E-03 |
| 50 | GO:0006021: inositol biosynthetic process | 1.24E-03 |
| 51 | GO:0006396: RNA processing | 1.47E-03 |
| 52 | GO:0009791: post-embryonic development | 1.55E-03 |
| 53 | GO:0009904: chloroplast accumulation movement | 1.57E-03 |
| 54 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.57E-03 |
| 55 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 1.94E-03 |
| 56 | GO:0016554: cytidine to uridine editing | 1.94E-03 |
| 57 | GO:0045962: positive regulation of development, heterochronic | 1.94E-03 |
| 58 | GO:0009903: chloroplast avoidance movement | 2.32E-03 |
| 59 | GO:0009648: photoperiodism | 2.32E-03 |
| 60 | GO:0010310: regulation of hydrogen peroxide metabolic process | 2.32E-03 |
| 61 | GO:0032880: regulation of protein localization | 2.74E-03 |
| 62 | GO:2000070: regulation of response to water deprivation | 3.17E-03 |
| 63 | GO:0048564: photosystem I assembly | 3.17E-03 |
| 64 | GO:0006605: protein targeting | 3.17E-03 |
| 65 | GO:0022900: electron transport chain | 3.63E-03 |
| 66 | GO:0045087: innate immune response | 3.91E-03 |
| 67 | GO:0006783: heme biosynthetic process | 4.10E-03 |
| 68 | GO:0009245: lipid A biosynthetic process | 4.10E-03 |
| 69 | GO:0048507: meristem development | 4.10E-03 |
| 70 | GO:0005982: starch metabolic process | 4.60E-03 |
| 71 | GO:0043067: regulation of programmed cell death | 4.60E-03 |
| 72 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.60E-03 |
| 73 | GO:1900865: chloroplast RNA modification | 4.60E-03 |
| 74 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 4.60E-03 |
| 75 | GO:0009658: chloroplast organization | 4.93E-03 |
| 76 | GO:0009744: response to sucrose | 5.03E-03 |
| 77 | GO:0010629: negative regulation of gene expression | 5.11E-03 |
| 78 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.65E-03 |
| 79 | GO:0010015: root morphogenesis | 5.65E-03 |
| 80 | GO:0009773: photosynthetic electron transport in photosystem I | 5.65E-03 |
| 81 | GO:0008285: negative regulation of cell proliferation | 5.65E-03 |
| 82 | GO:0019684: photosynthesis, light reaction | 5.65E-03 |
| 83 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.65E-03 |
| 84 | GO:1903507: negative regulation of nucleic acid-templated transcription | 5.65E-03 |
| 85 | GO:0016024: CDP-diacylglycerol biosynthetic process | 6.20E-03 |
| 86 | GO:0045037: protein import into chloroplast stroma | 6.20E-03 |
| 87 | GO:0055114: oxidation-reduction process | 6.23E-03 |
| 88 | GO:0042538: hyperosmotic salinity response | 6.32E-03 |
| 89 | GO:0006006: glucose metabolic process | 6.78E-03 |
| 90 | GO:0009725: response to hormone | 6.78E-03 |
| 91 | GO:2000012: regulation of auxin polar transport | 6.78E-03 |
| 92 | GO:0009266: response to temperature stimulus | 7.37E-03 |
| 93 | GO:0010143: cutin biosynthetic process | 7.37E-03 |
| 94 | GO:0019253: reductive pentose-phosphate cycle | 7.37E-03 |
| 95 | GO:0015979: photosynthesis | 7.68E-03 |
| 96 | GO:0090351: seedling development | 7.98E-03 |
| 97 | GO:0006636: unsaturated fatty acid biosynthetic process | 8.61E-03 |
| 98 | GO:0006289: nucleotide-excision repair | 9.26E-03 |
| 99 | GO:0010073: meristem maintenance | 9.92E-03 |
| 100 | GO:0009768: photosynthesis, light harvesting in photosystem I | 9.92E-03 |
| 101 | GO:0016042: lipid catabolic process | 1.03E-02 |
| 102 | GO:0048511: rhythmic process | 1.06E-02 |
| 103 | GO:0031348: negative regulation of defense response | 1.13E-02 |
| 104 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.13E-02 |
| 105 | GO:0010227: floral organ abscission | 1.20E-02 |
| 106 | GO:0009306: protein secretion | 1.27E-02 |
| 107 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.35E-02 |
| 108 | GO:0008284: positive regulation of cell proliferation | 1.35E-02 |
| 109 | GO:0000271: polysaccharide biosynthetic process | 1.43E-02 |
| 110 | GO:0010197: polar nucleus fusion | 1.50E-02 |
| 111 | GO:0009741: response to brassinosteroid | 1.50E-02 |
| 112 | GO:0045489: pectin biosynthetic process | 1.50E-02 |
| 113 | GO:0009958: positive gravitropism | 1.50E-02 |
| 114 | GO:0007018: microtubule-based movement | 1.58E-02 |
| 115 | GO:0042752: regulation of circadian rhythm | 1.58E-02 |
| 116 | GO:0009646: response to absence of light | 1.58E-02 |
| 117 | GO:0008654: phospholipid biosynthetic process | 1.66E-02 |
| 118 | GO:0010228: vegetative to reproductive phase transition of meristem | 1.75E-02 |
| 119 | GO:0000302: response to reactive oxygen species | 1.75E-02 |
| 120 | GO:0016032: viral process | 1.83E-02 |
| 121 | GO:0030163: protein catabolic process | 1.91E-02 |
| 122 | GO:0010090: trichome morphogenesis | 1.91E-02 |
| 123 | GO:0010286: heat acclimation | 2.09E-02 |
| 124 | GO:0000910: cytokinesis | 2.18E-02 |
| 125 | GO:0009416: response to light stimulus | 2.20E-02 |
| 126 | GO:0010027: thylakoid membrane organization | 2.27E-02 |
| 127 | GO:0016126: sterol biosynthetic process | 2.27E-02 |
| 128 | GO:0009627: systemic acquired resistance | 2.45E-02 |
| 129 | GO:0016311: dephosphorylation | 2.64E-02 |
| 130 | GO:0018298: protein-chromophore linkage | 2.74E-02 |
| 131 | GO:0009813: flavonoid biosynthetic process | 2.84E-02 |
| 132 | GO:0009631: cold acclimation | 3.04E-02 |
| 133 | GO:0048527: lateral root development | 3.04E-02 |
| 134 | GO:0048366: leaf development | 3.06E-02 |
| 135 | GO:0009637: response to blue light | 3.24E-02 |
| 136 | GO:0016051: carbohydrate biosynthetic process | 3.24E-02 |
| 137 | GO:0006631: fatty acid metabolic process | 3.67E-02 |
| 138 | GO:0009640: photomorphogenesis | 3.88E-02 |
| 139 | GO:0006886: intracellular protein transport | 3.97E-02 |
| 140 | GO:0009965: leaf morphogenesis | 4.22E-02 |
| 141 | GO:0031347: regulation of defense response | 4.45E-02 |
| 142 | GO:0006364: rRNA processing | 4.80E-02 |
| 143 | GO:0006397: mRNA processing | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004076: biotin synthase activity | 0.00E+00 |
| 2 | GO:0009029: tetraacyldisaccharide 4'-kinase activity | 0.00E+00 |
| 3 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 4 | GO:0050613: delta14-sterol reductase activity | 0.00E+00 |
| 5 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.77E-04 |
| 6 | GO:0052857: NADPHX epimerase activity | 1.77E-04 |
| 7 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.77E-04 |
| 8 | GO:0004733: pyridoxamine-phosphate oxidase activity | 1.77E-04 |
| 9 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.77E-04 |
| 10 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.77E-04 |
| 11 | GO:0052856: NADHX epimerase activity | 1.77E-04 |
| 12 | GO:0009496: plastoquinol--plastocyanin reductase activity | 1.77E-04 |
| 13 | GO:0042389: omega-3 fatty acid desaturase activity | 4.01E-04 |
| 14 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 4.01E-04 |
| 15 | GO:0004817: cysteine-tRNA ligase activity | 4.01E-04 |
| 16 | GO:0004512: inositol-3-phosphate synthase activity | 4.01E-04 |
| 17 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 4.01E-04 |
| 18 | GO:0004829: threonine-tRNA ligase activity | 4.01E-04 |
| 19 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.01E-04 |
| 20 | GO:0016491: oxidoreductase activity | 5.47E-04 |
| 21 | GO:0030267: glyoxylate reductase (NADP) activity | 6.55E-04 |
| 22 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 6.55E-04 |
| 23 | GO:0003913: DNA photolyase activity | 6.55E-04 |
| 24 | GO:0005504: fatty acid binding | 6.55E-04 |
| 25 | GO:0016788: hydrolase activity, acting on ester bonds | 9.27E-04 |
| 26 | GO:0048027: mRNA 5'-UTR binding | 9.34E-04 |
| 27 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 9.34E-04 |
| 28 | GO:0016851: magnesium chelatase activity | 9.34E-04 |
| 29 | GO:0016279: protein-lysine N-methyltransferase activity | 1.24E-03 |
| 30 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.24E-03 |
| 31 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.24E-03 |
| 32 | GO:0070628: proteasome binding | 1.24E-03 |
| 33 | GO:0045430: chalcone isomerase activity | 1.24E-03 |
| 34 | GO:0004040: amidase activity | 1.57E-03 |
| 35 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.94E-03 |
| 36 | GO:2001070: starch binding | 1.94E-03 |
| 37 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.94E-03 |
| 38 | GO:0031593: polyubiquitin binding | 1.94E-03 |
| 39 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.32E-03 |
| 40 | GO:0051920: peroxiredoxin activity | 2.32E-03 |
| 41 | GO:0016832: aldehyde-lyase activity | 2.32E-03 |
| 42 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.32E-03 |
| 43 | GO:0009881: photoreceptor activity | 2.74E-03 |
| 44 | GO:0008236: serine-type peptidase activity | 2.94E-03 |
| 45 | GO:0016209: antioxidant activity | 3.17E-03 |
| 46 | GO:0043022: ribosome binding | 3.17E-03 |
| 47 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.57E-03 |
| 48 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.63E-03 |
| 49 | GO:0008173: RNA methyltransferase activity | 3.63E-03 |
| 50 | GO:0003993: acid phosphatase activity | 4.09E-03 |
| 51 | GO:0051537: 2 iron, 2 sulfur cluster binding | 5.44E-03 |
| 52 | GO:0000175: 3'-5'-exoribonuclease activity | 6.78E-03 |
| 53 | GO:0052689: carboxylic ester hydrolase activity | 7.37E-03 |
| 54 | GO:0008083: growth factor activity | 7.37E-03 |
| 55 | GO:0008266: poly(U) RNA binding | 7.37E-03 |
| 56 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 7.37E-03 |
| 57 | GO:0031409: pigment binding | 8.61E-03 |
| 58 | GO:0051536: iron-sulfur cluster binding | 9.26E-03 |
| 59 | GO:0043130: ubiquitin binding | 9.26E-03 |
| 60 | GO:0005528: FK506 binding | 9.26E-03 |
| 61 | GO:0003714: transcription corepressor activity | 9.26E-03 |
| 62 | GO:0008408: 3'-5' exonuclease activity | 1.06E-02 |
| 63 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.13E-02 |
| 64 | GO:0030570: pectate lyase activity | 1.20E-02 |
| 65 | GO:0004252: serine-type endopeptidase activity | 1.35E-02 |
| 66 | GO:0008080: N-acetyltransferase activity | 1.50E-02 |
| 67 | GO:0010181: FMN binding | 1.58E-02 |
| 68 | GO:0004872: receptor activity | 1.66E-02 |
| 69 | GO:0048038: quinone binding | 1.75E-02 |
| 70 | GO:0003684: damaged DNA binding | 2.00E-02 |
| 71 | GO:0016791: phosphatase activity | 2.00E-02 |
| 72 | GO:0008483: transaminase activity | 2.09E-02 |
| 73 | GO:0016168: chlorophyll binding | 2.36E-02 |
| 74 | GO:0003723: RNA binding | 2.53E-02 |
| 75 | GO:0050660: flavin adenine dinucleotide binding | 3.00E-02 |
| 76 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.24E-02 |
| 77 | GO:0003746: translation elongation factor activity | 3.24E-02 |
| 78 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.56E-02 |
| 79 | GO:0005525: GTP binding | 4.08E-02 |
| 80 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.33E-02 |
| 81 | GO:0016787: hydrolase activity | 4.77E-02 |
| 82 | GO:0005509: calcium ion binding | 4.77E-02 |
| 83 | GO:0016298: lipase activity | 4.92E-02 |