Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G45820

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016553: base conversion or substitution editing0.00E+00
2GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
3GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
6GO:0046471: phosphatidylglycerol metabolic process0.00E+00
7GO:0034337: RNA folding0.00E+00
8GO:0006982: response to lipid hydroperoxide0.00E+00
9GO:0002184: cytoplasmic translational termination0.00E+00
10GO:0010335: response to non-ionic osmotic stress0.00E+00
11GO:1901918: negative regulation of exoribonuclease activity0.00E+00
12GO:0015995: chlorophyll biosynthetic process4.66E-11
13GO:0015979: photosynthesis4.21E-09
14GO:0055114: oxidation-reduction process2.49E-07
15GO:0009658: chloroplast organization1.26E-06
16GO:0009773: photosynthetic electron transport in photosystem I3.09E-06
17GO:0006094: gluconeogenesis5.73E-06
18GO:0010207: photosystem II assembly7.56E-06
19GO:1902326: positive regulation of chlorophyll biosynthetic process9.54E-06
20GO:0030388: fructose 1,6-bisphosphate metabolic process9.54E-06
21GO:0006000: fructose metabolic process3.26E-05
22GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly7.03E-05
23GO:0006021: inositol biosynthetic process1.23E-04
24GO:0010600: regulation of auxin biosynthetic process1.23E-04
25GO:0010027: thylakoid membrane organization1.86E-04
26GO:0006636: unsaturated fatty acid biosynthetic process2.36E-04
27GO:0046855: inositol phosphate dephosphorylation2.68E-04
28GO:0010244: response to low fluence blue light stimulus by blue low-fluence system3.59E-04
29GO:0009090: homoserine biosynthetic process4.64E-04
30GO:0015969: guanosine tetraphosphate metabolic process4.64E-04
31GO:0046467: membrane lipid biosynthetic process4.64E-04
32GO:1902478: negative regulation of defense response to bacterium, incompatible interaction4.64E-04
33GO:0031426: polycistronic mRNA processing4.64E-04
34GO:0043489: RNA stabilization4.64E-04
35GO:0043953: protein transport by the Tat complex4.64E-04
36GO:0000481: maturation of 5S rRNA4.64E-04
37GO:0010426: DNA methylation on cytosine within a CHH sequence4.64E-04
38GO:0065002: intracellular protein transmembrane transport4.64E-04
39GO:0043686: co-translational protein modification4.64E-04
40GO:0043087: regulation of GTPase activity4.64E-04
41GO:0071461: cellular response to redox state4.64E-04
42GO:0051775: response to redox state4.64E-04
43GO:0071277: cellular response to calcium ion4.64E-04
44GO:0046167: glycerol-3-phosphate biosynthetic process4.64E-04
45GO:0043007: maintenance of rDNA4.64E-04
46GO:1902458: positive regulation of stomatal opening4.64E-04
47GO:0010362: negative regulation of anion channel activity by blue light4.64E-04
48GO:0010928: regulation of auxin mediated signaling pathway5.75E-04
49GO:0009704: de-etiolation5.75E-04
50GO:0016559: peroxisome fission5.75E-04
51GO:0032544: plastid translation7.02E-04
52GO:0006002: fructose 6-phosphate metabolic process7.02E-04
53GO:0071482: cellular response to light stimulus7.02E-04
54GO:0019252: starch biosynthetic process8.13E-04
55GO:0006783: heme biosynthetic process8.40E-04
56GO:0042819: vitamin B6 biosynthetic process1.00E-03
57GO:0006650: glycerophospholipid metabolic process1.00E-03
58GO:0008616: queuosine biosynthetic process1.00E-03
59GO:0010155: regulation of proton transport1.00E-03
60GO:0006729: tetrahydrobiopterin biosynthetic process1.00E-03
61GO:1903426: regulation of reactive oxygen species biosynthetic process1.00E-03
62GO:0015790: UDP-xylose transport1.00E-03
63GO:0080005: photosystem stoichiometry adjustment1.00E-03
64GO:0009735: response to cytokinin1.18E-03
65GO:0032259: methylation1.39E-03
66GO:0006790: sulfur compound metabolic process1.52E-03
67GO:0034051: negative regulation of plant-type hypersensitive response1.63E-03
68GO:0046168: glycerol-3-phosphate catabolic process1.63E-03
69GO:0044375: regulation of peroxisome size1.63E-03
70GO:0005986: sucrose biosynthetic process1.73E-03
71GO:0019253: reductive pentose-phosphate cycle1.95E-03
72GO:0018298: protein-chromophore linkage1.97E-03
73GO:0006810: transport2.15E-03
74GO:0046854: phosphatidylinositol phosphorylation2.19E-03
75GO:0008615: pyridoxine biosynthetic process2.37E-03
76GO:0010731: protein glutathionylation2.37E-03
77GO:0006072: glycerol-3-phosphate metabolic process2.37E-03
78GO:2001141: regulation of RNA biosynthetic process2.37E-03
79GO:0042823: pyridoxal phosphate biosynthetic process2.37E-03
80GO:0009067: aspartate family amino acid biosynthetic process2.37E-03
81GO:0006020: inositol metabolic process2.37E-03
82GO:0071484: cellular response to light intensity2.37E-03
83GO:0009152: purine ribonucleotide biosynthetic process2.37E-03
84GO:0046653: tetrahydrofolate metabolic process2.37E-03
85GO:0006107: oxaloacetate metabolic process2.37E-03
86GO:0010239: chloroplast mRNA processing2.37E-03
87GO:0009052: pentose-phosphate shunt, non-oxidative branch2.37E-03
88GO:0033014: tetrapyrrole biosynthetic process2.37E-03
89GO:0034599: cellular response to oxidative stress2.83E-03
90GO:0015994: chlorophyll metabolic process3.18E-03
91GO:0006546: glycine catabolic process3.18E-03
92GO:0006734: NADH metabolic process3.18E-03
93GO:0010021: amylopectin biosynthetic process3.18E-03
94GO:0009765: photosynthesis, light harvesting3.18E-03
95GO:0045727: positive regulation of translation3.18E-03
96GO:0044550: secondary metabolite biosynthetic process3.21E-03
97GO:0031408: oxylipin biosynthetic process3.28E-03
98GO:0019748: secondary metabolic process3.59E-03
99GO:0007623: circadian rhythm3.95E-03
100GO:0006564: L-serine biosynthetic process4.08E-03
101GO:0009904: chloroplast accumulation movement4.08E-03
102GO:0010236: plastoquinone biosynthetic process4.08E-03
103GO:0045038: protein import into chloroplast thylakoid membrane4.08E-03
104GO:0031365: N-terminal protein amino acid modification4.08E-03
105GO:0009107: lipoate biosynthetic process4.08E-03
106GO:0000304: response to singlet oxygen4.08E-03
107GO:0006465: signal peptide processing4.08E-03
108GO:0042631: cellular response to water deprivation5.00E-03
109GO:0009920: cell plate formation involved in plant-type cell wall biogenesis5.05E-03
110GO:0042549: photosystem II stabilization5.05E-03
111GO:1902456: regulation of stomatal opening5.05E-03
112GO:0006520: cellular amino acid metabolic process5.39E-03
113GO:0017148: negative regulation of translation6.09E-03
114GO:0009903: chloroplast avoidance movement6.09E-03
115GO:0010189: vitamin E biosynthetic process6.09E-03
116GO:0009854: oxidative photosynthetic carbon pathway6.09E-03
117GO:1901259: chloroplast rRNA processing6.09E-03
118GO:0000054: ribosomal subunit export from nucleus6.09E-03
119GO:0009088: threonine biosynthetic process6.09E-03
120GO:0009791: post-embryonic development6.23E-03
121GO:0005975: carbohydrate metabolic process6.28E-03
122GO:1900057: positive regulation of leaf senescence7.20E-03
123GO:0006400: tRNA modification7.20E-03
124GO:0050790: regulation of catalytic activity7.20E-03
125GO:0010161: red light signaling pathway7.20E-03
126GO:0009772: photosynthetic electron transport in photosystem II7.20E-03
127GO:1900056: negative regulation of leaf senescence7.20E-03
128GO:0032508: DNA duplex unwinding8.39E-03
129GO:2000070: regulation of response to water deprivation8.39E-03
130GO:0042255: ribosome assembly8.39E-03
131GO:0006353: DNA-templated transcription, termination8.39E-03
132GO:0007186: G-protein coupled receptor signaling pathway9.63E-03
133GO:0006526: arginine biosynthetic process9.63E-03
134GO:0009657: plastid organization9.63E-03
135GO:0009932: cell tip growth9.63E-03
136GO:0015996: chlorophyll catabolic process9.63E-03
137GO:0010206: photosystem II repair1.09E-02
138GO:0006098: pentose-phosphate shunt1.09E-02
139GO:0090333: regulation of stomatal closure1.09E-02
140GO:0006754: ATP biosynthetic process1.09E-02
141GO:0048507: meristem development1.09E-02
142GO:0090305: nucleic acid phosphodiester bond hydrolysis1.09E-02
143GO:0009086: methionine biosynthetic process1.23E-02
144GO:0010380: regulation of chlorophyll biosynthetic process1.23E-02
145GO:0010205: photoinhibition1.23E-02
146GO:0009638: phototropism1.23E-02
147GO:0010267: production of ta-siRNAs involved in RNA interference1.23E-02
148GO:0006779: porphyrin-containing compound biosynthetic process1.23E-02
149GO:0006535: cysteine biosynthetic process from serine1.37E-02
150GO:0006782: protoporphyrinogen IX biosynthetic process1.37E-02
151GO:0043069: negative regulation of programmed cell death1.37E-02
152GO:0006633: fatty acid biosynthetic process1.52E-02
153GO:0009089: lysine biosynthetic process via diaminopimelate1.52E-02
154GO:0006352: DNA-templated transcription, initiation1.52E-02
155GO:0000272: polysaccharide catabolic process1.52E-02
156GO:0018119: peptidyl-cysteine S-nitrosylation1.52E-02
157GO:0006415: translational termination1.52E-02
158GO:0019684: photosynthesis, light reaction1.52E-02
159GO:0009853: photorespiration1.61E-02
160GO:0016925: protein sumoylation1.68E-02
161GO:0045037: protein import into chloroplast stroma1.68E-02
162GO:0006108: malate metabolic process1.84E-02
163GO:0009785: blue light signaling pathway1.84E-02
164GO:0009718: anthocyanin-containing compound biosynthetic process1.84E-02
165GO:0009725: response to hormone1.84E-02
166GO:0030048: actin filament-based movement1.84E-02
167GO:0006631: fatty acid metabolic process1.92E-02
168GO:0034605: cellular response to heat2.00E-02
169GO:0010020: chloroplast fission2.00E-02
170GO:0009266: response to temperature stimulus2.00E-02
171GO:0042343: indole glucosinolate metabolic process2.17E-02
172GO:0019853: L-ascorbic acid biosynthetic process2.17E-02
173GO:0005985: sucrose metabolic process2.17E-02
174GO:0007031: peroxisome organization2.17E-02
175GO:0009636: response to toxic substance2.34E-02
176GO:0009833: plant-type primary cell wall biogenesis2.35E-02
177GO:0019762: glucosinolate catabolic process2.35E-02
178GO:0000027: ribosomal large subunit assembly2.53E-02
179GO:0006406: mRNA export from nucleus2.53E-02
180GO:0006289: nucleotide-excision repair2.53E-02
181GO:0019344: cysteine biosynthetic process2.53E-02
182GO:0006364: rRNA processing2.80E-02
183GO:0009585: red, far-red light phototransduction2.80E-02
184GO:0006306: DNA methylation2.90E-02
185GO:0098542: defense response to other organism2.90E-02
186GO:0061077: chaperone-mediated protein folding2.90E-02
187GO:0042254: ribosome biogenesis3.03E-02
188GO:0030433: ubiquitin-dependent ERAD pathway3.09E-02
189GO:0016226: iron-sulfur cluster assembly3.09E-02
190GO:0010017: red or far-red light signaling pathway3.09E-02
191GO:0009409: response to cold3.28E-02
192GO:0009693: ethylene biosynthetic process3.29E-02
193GO:0043086: negative regulation of catalytic activity3.32E-02
194GO:0006096: glycolytic process3.32E-02
195GO:0009306: protein secretion3.49E-02
196GO:0019722: calcium-mediated signaling3.49E-02
197GO:0009561: megagametogenesis3.49E-02
198GO:0006817: phosphate ion transport3.49E-02
199GO:0006606: protein import into nucleus3.91E-02
200GO:0006396: RNA processing4.10E-02
201GO:0006662: glycerol ether metabolic process4.12E-02
202GO:0010182: sugar mediated signaling pathway4.12E-02
203GO:0015986: ATP synthesis coupled proton transport4.34E-02
204GO:0009646: response to absence of light4.34E-02
205GO:0008654: phospholipid biosynthetic process4.56E-02
206GO:0000302: response to reactive oxygen species4.78E-02
RankGO TermAdjusted P value
1GO:0045550: geranylgeranyl reductase activity0.00E+00
2GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
3GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
6GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
7GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
8GO:0008465: glycerate dehydrogenase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
11GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
12GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
13GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
14GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
15GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
16GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
17GO:0019843: rRNA binding7.11E-07
18GO:0008934: inositol monophosphate 1-phosphatase activity9.54E-06
19GO:0052833: inositol monophosphate 4-phosphatase activity9.54E-06
20GO:0052832: inositol monophosphate 3-phosphatase activity9.54E-06
21GO:0018708: thiol S-methyltransferase activity9.54E-06
22GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity9.54E-06
23GO:0004373: glycogen (starch) synthase activity3.26E-05
24GO:0048027: mRNA 5'-UTR binding7.03E-05
25GO:0016851: magnesium chelatase activity7.03E-05
26GO:0009011: starch synthase activity1.23E-04
27GO:0043495: protein anchor1.23E-04
28GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.23E-04
29GO:0031072: heat shock protein binding1.43E-04
30GO:0008266: poly(U) RNA binding1.71E-04
31GO:0016491: oxidoreductase activity1.80E-04
32GO:0004332: fructose-bisphosphate aldolase activity2.68E-04
33GO:0042802: identical protein binding2.98E-04
34GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.59E-04
35GO:0019899: enzyme binding4.62E-04
36GO:0080132: fatty acid alpha-hydroxylase activity4.64E-04
37GO:0008746: NAD(P)+ transhydrogenase activity4.64E-04
38GO:0004325: ferrochelatase activity4.64E-04
39GO:0004853: uroporphyrinogen decarboxylase activity4.64E-04
40GO:0042586: peptide deformylase activity4.64E-04
41GO:0010313: phytochrome binding4.64E-04
42GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.64E-04
43GO:0010347: L-galactose-1-phosphate phosphatase activity4.64E-04
44GO:0035671: enone reductase activity4.64E-04
45GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity4.64E-04
46GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.64E-04
47GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.02E-04
48GO:0051287: NAD binding8.51E-04
49GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity1.00E-03
50GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity1.00E-03
51GO:0043024: ribosomal small subunit binding1.00E-03
52GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.00E-03
53GO:0008728: GTP diphosphokinase activity1.00E-03
54GO:0005464: UDP-xylose transmembrane transporter activity1.00E-03
55GO:0004412: homoserine dehydrogenase activity1.00E-03
56GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity1.00E-03
57GO:0050017: L-3-cyanoalanine synthase activity1.00E-03
58GO:0042389: omega-3 fatty acid desaturase activity1.00E-03
59GO:0010297: heteropolysaccharide binding1.00E-03
60GO:0009977: proton motive force dependent protein transmembrane transporter activity1.00E-03
61GO:0004617: phosphoglycerate dehydrogenase activity1.00E-03
62GO:0004047: aminomethyltransferase activity1.00E-03
63GO:0033201: alpha-1,4-glucan synthase activity1.00E-03
64GO:0008479: queuine tRNA-ribosyltransferase activity1.00E-03
65GO:0016992: lipoate synthase activity1.63E-03
66GO:0004751: ribose-5-phosphate isomerase activity1.63E-03
67GO:0030267: glyoxylate reductase (NADP) activity1.63E-03
68GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.63E-03
69GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.63E-03
70GO:0008864: formyltetrahydrofolate deformylase activity1.63E-03
71GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.63E-03
72GO:0019948: SUMO activating enzyme activity1.63E-03
73GO:0010277: chlorophyllide a oxygenase [overall] activity1.63E-03
74GO:0005504: fatty acid binding1.63E-03
75GO:0004565: beta-galactosidase activity1.73E-03
76GO:0008168: methyltransferase activity1.77E-03
77GO:0009882: blue light photoreceptor activity2.37E-03
78GO:0043023: ribosomal large subunit binding2.37E-03
79GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.37E-03
80GO:0004072: aspartate kinase activity2.37E-03
81GO:0005528: FK506 binding2.70E-03
82GO:0016987: sigma factor activity3.18E-03
83GO:0001053: plastid sigma factor activity3.18E-03
84GO:0070628: proteasome binding3.18E-03
85GO:0045430: chalcone isomerase activity3.18E-03
86GO:0022891: substrate-specific transmembrane transporter activity3.92E-03
87GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen4.08E-03
88GO:0003727: single-stranded RNA binding4.27E-03
89GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.50E-03
90GO:0004130: cytochrome-c peroxidase activity5.05E-03
91GO:0035673: oligopeptide transmembrane transporter activity5.05E-03
92GO:0016615: malate dehydrogenase activity5.05E-03
93GO:0042578: phosphoric ester hydrolase activity5.05E-03
94GO:0031593: polyubiquitin binding5.05E-03
95GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.09E-03
96GO:0030060: L-malate dehydrogenase activity6.09E-03
97GO:0003886: DNA (cytosine-5-)-methyltransferase activity6.09E-03
98GO:0004124: cysteine synthase activity6.09E-03
99GO:0005506: iron ion binding6.49E-03
100GO:0048038: quinone binding6.67E-03
101GO:0004518: nuclease activity7.13E-03
102GO:0004033: aldo-keto reductase (NADP) activity8.39E-03
103GO:0051082: unfolded protein binding8.50E-03
104GO:0016597: amino acid binding9.13E-03
105GO:0008135: translation factor activity, RNA binding9.63E-03
106GO:0016168: chlorophyll binding1.02E-02
107GO:0071949: FAD binding1.09E-02
108GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.23E-02
109GO:0030234: enzyme regulator activity1.37E-02
110GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.57E-02
111GO:0003729: mRNA binding1.57E-02
112GO:0003746: translation elongation factor activity1.61E-02
113GO:0015198: oligopeptide transporter activity1.68E-02
114GO:0005315: inorganic phosphate transmembrane transporter activity1.84E-02
115GO:0000155: phosphorelay sensor kinase activity1.84E-02
116GO:0019888: protein phosphatase regulator activity1.84E-02
117GO:0004364: glutathione transferase activity2.00E-02
118GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.00E-02
119GO:0003774: motor activity2.00E-02
120GO:0004185: serine-type carboxypeptidase activity2.08E-02
121GO:0035091: phosphatidylinositol binding2.25E-02
122GO:0051537: 2 iron, 2 sulfur cluster binding2.25E-02
123GO:0005515: protein binding2.30E-02
124GO:0051536: iron-sulfur cluster binding2.53E-02
125GO:0043130: ubiquitin binding2.53E-02
126GO:0003690: double-stranded DNA binding2.90E-02
127GO:0016760: cellulose synthase (UDP-forming) activity3.29E-02
128GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.42E-02
129GO:0005525: GTP binding3.46E-02
130GO:0016887: ATPase activity3.66E-02
131GO:0047134: protein-disulfide reductase activity3.70E-02
132GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.12E-02
133GO:0050662: coenzyme binding4.34E-02
134GO:0010181: FMN binding4.34E-02
135GO:0004791: thioredoxin-disulfide reductase activity4.34E-02
136GO:0004872: receptor activity4.56E-02
137GO:0016762: xyloglucan:xyloglucosyl transferase activity4.78E-02
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Gene type



Gene DE type