Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G45680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006982: response to lipid hydroperoxide0.00E+00
2GO:0010335: response to non-ionic osmotic stress0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
6GO:0015717: triose phosphate transport0.00E+00
7GO:0046471: phosphatidylglycerol metabolic process0.00E+00
8GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
9GO:0034337: RNA folding0.00E+00
10GO:0015979: photosynthesis4.23E-08
11GO:0055114: oxidation-reduction process8.87E-08
12GO:0015995: chlorophyll biosynthetic process2.22E-07
13GO:0009735: response to cytokinin1.33E-06
14GO:0006094: gluconeogenesis1.75E-06
15GO:0006636: unsaturated fatty acid biosynthetic process3.90E-06
16GO:0030388: fructose 1,6-bisphosphate metabolic process4.70E-06
17GO:1902326: positive regulation of chlorophyll biosynthetic process4.70E-06
18GO:0006000: fructose metabolic process1.67E-05
19GO:0009773: photosynthetic electron transport in photosystem I4.17E-05
20GO:0010207: photosystem II assembly7.75E-05
21GO:0019253: reductive pentose-phosphate cycle7.75E-05
22GO:0009658: chloroplast organization1.35E-04
23GO:0019748: secondary metabolic process1.93E-04
24GO:0019510: S-adenosylhomocysteine catabolic process3.22E-04
25GO:0000476: maturation of 4.5S rRNA3.22E-04
26GO:0000967: rRNA 5'-end processing3.22E-04
27GO:0046467: membrane lipid biosynthetic process3.22E-04
28GO:0043953: protein transport by the Tat complex3.22E-04
29GO:0051775: response to redox state3.22E-04
30GO:0071277: cellular response to calcium ion3.22E-04
31GO:0000481: maturation of 5S rRNA3.22E-04
32GO:0065002: intracellular protein transmembrane transport3.22E-04
33GO:0043686: co-translational protein modification3.22E-04
34GO:0043087: regulation of GTPase activity3.22E-04
35GO:0071461: cellular response to redox state3.22E-04
36GO:0048564: photosystem I assembly3.36E-04
37GO:0009704: de-etiolation3.36E-04
38GO:0016559: peroxisome fission3.36E-04
39GO:0006002: fructose 6-phosphate metabolic process4.12E-04
40GO:0071482: cellular response to light stimulus4.12E-04
41GO:0032259: methylation4.63E-04
42GO:0010206: photosystem II repair4.95E-04
43GO:0006783: heme biosynthetic process4.95E-04
44GO:0010205: photoinhibition5.85E-04
45GO:0006779: porphyrin-containing compound biosynthetic process5.85E-04
46GO:0034470: ncRNA processing7.02E-04
47GO:0042819: vitamin B6 biosynthetic process7.02E-04
48GO:0080005: photosystem stoichiometry adjustment7.02E-04
49GO:0033353: S-adenosylmethionine cycle7.02E-04
50GO:0008616: queuosine biosynthetic process7.02E-04
51GO:0015790: UDP-xylose transport7.02E-04
52GO:0018119: peptidyl-cysteine S-nitrosylation7.88E-04
53GO:0009767: photosynthetic electron transport chain1.02E-03
54GO:0005986: sucrose biosynthetic process1.02E-03
55GO:0006518: peptide metabolic process1.14E-03
56GO:0035436: triose phosphate transmembrane transport1.14E-03
57GO:0044375: regulation of peroxisome size1.14E-03
58GO:0044550: secondary metabolite biosynthetic process1.21E-03
59GO:0034599: cellular response to oxidative stress1.41E-03
60GO:0006810: transport1.55E-03
61GO:0071484: cellular response to light intensity1.63E-03
62GO:0009152: purine ribonucleotide biosynthetic process1.63E-03
63GO:0046653: tetrahydrofolate metabolic process1.63E-03
64GO:0006107: oxaloacetate metabolic process1.63E-03
65GO:0033014: tetrapyrrole biosynthetic process1.63E-03
66GO:0008615: pyridoxine biosynthetic process1.63E-03
67GO:0010731: protein glutathionylation1.63E-03
68GO:0042823: pyridoxal phosphate biosynthetic process1.63E-03
69GO:2001141: regulation of RNA biosynthetic process1.63E-03
70GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.63E-03
71GO:0006020: inositol metabolic process1.63E-03
72GO:0031408: oxylipin biosynthetic process1.91E-03
73GO:0009765: photosynthesis, light harvesting2.19E-03
74GO:0045727: positive regulation of translation2.19E-03
75GO:0015994: chlorophyll metabolic process2.19E-03
76GO:0010600: regulation of auxin biosynthetic process2.19E-03
77GO:0006546: glycine catabolic process2.19E-03
78GO:0006021: inositol biosynthetic process2.19E-03
79GO:0015713: phosphoglycerate transport2.19E-03
80GO:0006734: NADH metabolic process2.19E-03
81GO:0010021: amylopectin biosynthetic process2.19E-03
82GO:0000304: response to singlet oxygen2.80E-03
83GO:0006656: phosphatidylcholine biosynthetic process2.80E-03
84GO:0006564: L-serine biosynthetic process2.80E-03
85GO:0043097: pyrimidine nucleoside salvage2.80E-03
86GO:0010236: plastoquinone biosynthetic process2.80E-03
87GO:0031365: N-terminal protein amino acid modification2.80E-03
88GO:0009107: lipoate biosynthetic process2.80E-03
89GO:0042631: cellular response to water deprivation2.89E-03
90GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.46E-03
91GO:0006206: pyrimidine nucleobase metabolic process3.46E-03
92GO:0046855: inositol phosphate dephosphorylation3.46E-03
93GO:0009643: photosynthetic acclimation3.46E-03
94GO:0010304: PSII associated light-harvesting complex II catabolic process3.46E-03
95GO:0042549: photosystem II stabilization3.46E-03
96GO:0019252: starch biosynthetic process3.60E-03
97GO:0045926: negative regulation of growth4.17E-03
98GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.17E-03
99GO:1901259: chloroplast rRNA processing4.17E-03
100GO:0010189: vitamin E biosynthetic process4.17E-03
101GO:0009854: oxidative photosynthetic carbon pathway4.17E-03
102GO:0009772: photosynthetic electron transport in photosystem II4.92E-03
103GO:1900057: positive regulation of leaf senescence4.92E-03
104GO:0010161: red light signaling pathway4.92E-03
105GO:0010027: thylakoid membrane organization5.57E-03
106GO:0010928: regulation of auxin mediated signaling pathway5.71E-03
107GO:0008610: lipid biosynthetic process5.71E-03
108GO:0042255: ribosome assembly5.71E-03
109GO:0006353: DNA-templated transcription, termination5.71E-03
110GO:0032508: DNA duplex unwinding5.71E-03
111GO:0009932: cell tip growth6.55E-03
112GO:0009657: plastid organization6.55E-03
113GO:0032544: plastid translation6.55E-03
114GO:2000031: regulation of salicylic acid mediated signaling pathway6.55E-03
115GO:0018298: protein-chromophore linkage7.27E-03
116GO:0006098: pentose-phosphate shunt7.42E-03
117GO:0090333: regulation of stomatal closure7.42E-03
118GO:0006754: ATP biosynthetic process7.42E-03
119GO:0010267: production of ta-siRNAs involved in RNA interference8.34E-03
120GO:0007623: circadian rhythm8.46E-03
121GO:0009853: photorespiration9.22E-03
122GO:0006782: protoporphyrinogen IX biosynthetic process9.30E-03
123GO:0006535: cysteine biosynthetic process from serine9.30E-03
124GO:0019684: photosynthesis, light reaction1.03E-02
125GO:0072593: reactive oxygen species metabolic process1.03E-02
126GO:0006352: DNA-templated transcription, initiation1.03E-02
127GO:0000272: polysaccharide catabolic process1.03E-02
128GO:0006790: sulfur compound metabolic process1.13E-02
129GO:0002213: defense response to insect1.13E-02
130GO:0016925: protein sumoylation1.13E-02
131GO:0006108: malate metabolic process1.24E-02
132GO:0018107: peptidyl-threonine phosphorylation1.24E-02
133GO:0009636: response to toxic substance1.34E-02
134GO:0010020: chloroplast fission1.35E-02
135GO:0009266: response to temperature stimulus1.35E-02
136GO:0005975: carbohydrate metabolic process1.43E-02
137GO:0007031: peroxisome organization1.46E-02
138GO:0042343: indole glucosinolate metabolic process1.46E-02
139GO:0005985: sucrose metabolic process1.46E-02
140GO:0046854: phosphatidylinositol phosphorylation1.46E-02
141GO:0019762: glucosinolate catabolic process1.58E-02
142GO:0019344: cysteine biosynthetic process1.70E-02
143GO:0000027: ribosomal large subunit assembly1.70E-02
144GO:0006406: mRNA export from nucleus1.70E-02
145GO:0009695: jasmonic acid biosynthetic process1.83E-02
146GO:0006096: glycolytic process1.91E-02
147GO:0098542: defense response to other organism1.95E-02
148GO:0010017: red or far-red light signaling pathway2.08E-02
149GO:0016226: iron-sulfur cluster assembly2.08E-02
150GO:2000022: regulation of jasmonic acid mediated signaling pathway2.08E-02
151GO:0030433: ubiquitin-dependent ERAD pathway2.08E-02
152GO:0006730: one-carbon metabolic process2.08E-02
153GO:0006508: proteolysis2.23E-02
154GO:0006817: phosphate ion transport2.35E-02
155GO:0019722: calcium-mediated signaling2.35E-02
156GO:0009306: protein secretion2.35E-02
157GO:0006396: RNA processing2.37E-02
158GO:0009742: brassinosteroid mediated signaling pathway2.44E-02
159GO:0006606: protein import into nucleus2.63E-02
160GO:0006520: cellular amino acid metabolic process2.78E-02
161GO:0006662: glycerol ether metabolic process2.78E-02
162GO:0009741: response to brassinosteroid2.78E-02
163GO:0009646: response to absence of light2.92E-02
164GO:0015986: ATP synthesis coupled proton transport2.92E-02
165GO:0009058: biosynthetic process3.03E-02
166GO:0009409: response to cold3.22E-02
167GO:0000302: response to reactive oxygen species3.23E-02
168GO:0031047: gene silencing by RNA3.38E-02
169GO:0032502: developmental process3.38E-02
170GO:0030163: protein catabolic process3.54E-02
171GO:0006633: fatty acid biosynthetic process3.61E-02
172GO:0009567: double fertilization forming a zygote and endosperm3.70E-02
173GO:0007267: cell-cell signaling3.86E-02
174GO:0051607: defense response to virus4.03E-02
175GO:0042128: nitrate assimilation4.53E-02
176GO:0010411: xyloglucan metabolic process4.71E-02
177GO:0008380: RNA splicing4.72E-02
RankGO TermAdjusted P value
1GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
2GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
3GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
4GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
5GO:0090711: FMN hydrolase activity0.00E+00
6GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
7GO:0045550: geranylgeranyl reductase activity0.00E+00
8GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
9GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
10GO:0008974: phosphoribulokinase activity0.00E+00
11GO:0008465: glycerate dehydrogenase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0004768: stearoyl-CoA 9-desaturase activity0.00E+00
14GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
15GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
16GO:0019843: rRNA binding1.44E-06
17GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.70E-06
18GO:0018708: thiol S-methyltransferase activity4.70E-06
19GO:0016491: oxidoreductase activity2.11E-05
20GO:0016851: magnesium chelatase activity3.71E-05
21GO:0043495: protein anchor6.61E-05
22GO:0004332: fructose-bisphosphate aldolase activity1.50E-04
23GO:0019899: enzyme binding2.67E-04
24GO:0004013: adenosylhomocysteinase activity3.22E-04
25GO:0004325: ferrochelatase activity3.22E-04
26GO:0042586: peptide deformylase activity3.22E-04
27GO:0008746: NAD(P)+ transhydrogenase activity3.22E-04
28GO:0035671: enone reductase activity3.22E-04
29GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.22E-04
30GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.12E-04
31GO:0048038: quinone binding4.44E-04
32GO:0042802: identical protein binding5.09E-04
33GO:0008168: methyltransferase activity6.76E-04
34GO:0004617: phosphoglycerate dehydrogenase activity7.02E-04
35GO:0004047: aminomethyltransferase activity7.02E-04
36GO:0052832: inositol monophosphate 3-phosphatase activity7.02E-04
37GO:0033201: alpha-1,4-glucan synthase activity7.02E-04
38GO:0008479: queuine tRNA-ribosyltransferase activity7.02E-04
39GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.02E-04
40GO:0008934: inositol monophosphate 1-phosphatase activity7.02E-04
41GO:0052833: inositol monophosphate 4-phosphatase activity7.02E-04
42GO:0005464: UDP-xylose transmembrane transporter activity7.02E-04
43GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity7.02E-04
44GO:0000234: phosphoethanolamine N-methyltransferase activity7.02E-04
45GO:0050017: L-3-cyanoalanine synthase activity7.02E-04
46GO:0008883: glutamyl-tRNA reductase activity7.02E-04
47GO:0042389: omega-3 fatty acid desaturase activity7.02E-04
48GO:0010297: heteropolysaccharide binding7.02E-04
49GO:0009977: proton motive force dependent protein transmembrane transporter activity7.02E-04
50GO:0004565: beta-galactosidase activity1.02E-03
51GO:0031072: heat shock protein binding1.02E-03
52GO:0004222: metalloendopeptidase activity1.12E-03
53GO:0019948: SUMO activating enzyme activity1.14E-03
54GO:0010277: chlorophyllide a oxygenase [overall] activity1.14E-03
55GO:0004373: glycogen (starch) synthase activity1.14E-03
56GO:0016992: lipoate synthase activity1.14E-03
57GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.14E-03
58GO:0071917: triose-phosphate transmembrane transporter activity1.14E-03
59GO:0008864: formyltetrahydrofolate deformylase activity1.14E-03
60GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.63E-03
61GO:0004185: serine-type carboxypeptidase activity1.84E-03
62GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.19E-03
63GO:0016987: sigma factor activity2.19E-03
64GO:0009011: starch synthase activity2.19E-03
65GO:0015120: phosphoglycerate transmembrane transporter activity2.19E-03
66GO:0001053: plastid sigma factor activity2.19E-03
67GO:0022891: substrate-specific transmembrane transporter activity2.28E-03
68GO:0051287: NAD binding2.35E-03
69GO:0003727: single-stranded RNA binding2.47E-03
70GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.80E-03
71GO:0004130: cytochrome-c peroxidase activity3.46E-03
72GO:0035673: oligopeptide transmembrane transporter activity3.46E-03
73GO:0042578: phosphoric ester hydrolase activity3.46E-03
74GO:0016615: malate dehydrogenase activity3.46E-03
75GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.47E-03
76GO:0004124: cysteine synthase activity4.17E-03
77GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.17E-03
78GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.17E-03
79GO:0004849: uridine kinase activity4.17E-03
80GO:0030060: L-malate dehydrogenase activity4.17E-03
81GO:0004525: ribonuclease III activity5.71E-03
82GO:0016168: chlorophyll binding5.89E-03
83GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen6.81E-03
84GO:0071949: FAD binding7.42E-03
85GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity8.34E-03
86GO:0030234: enzyme regulator activity9.30E-03
87GO:0015198: oligopeptide transporter activity1.13E-02
88GO:0004364: glutathione transferase activity1.14E-02
89GO:0005315: inorganic phosphate transmembrane transporter activity1.24E-02
90GO:0043621: protein self-association1.29E-02
91GO:0051537: 2 iron, 2 sulfur cluster binding1.29E-02
92GO:0008266: poly(U) RNA binding1.35E-02
93GO:0016887: ATPase activity1.62E-02
94GO:0051536: iron-sulfur cluster binding1.70E-02
95GO:0005506: iron ion binding1.89E-02
96GO:0004176: ATP-dependent peptidase activity1.95E-02
97GO:0052689: carboxylic ester hydrolase activity2.20E-02
98GO:0051082: unfolded protein binding2.30E-02
99GO:0047134: protein-disulfide reductase activity2.49E-02
100GO:0016787: hydrolase activity2.74E-02
101GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.78E-02
102GO:0004791: thioredoxin-disulfide reductase activity2.92E-02
103GO:0050662: coenzyme binding2.92E-02
104GO:0016762: xyloglucan:xyloglucosyl transferase activity3.23E-02
105GO:0019825: oxygen binding3.33E-02
106GO:0009055: electron carrier activity3.44E-02
107GO:0008565: protein transporter activity3.44E-02
108GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.54E-02
109GO:0015297: antiporter activity3.78E-02
110GO:0008483: transaminase activity3.86E-02
111GO:0016722: oxidoreductase activity, oxidizing metal ions3.86E-02
112GO:0008237: metallopeptidase activity3.86E-02
113GO:0016597: amino acid binding4.03E-02
114GO:0020037: heme binding4.14E-02
115GO:0016798: hydrolase activity, acting on glycosyl bonds4.71E-02
116GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.88E-02
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Gene type



Gene DE type