Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G44680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
2GO:0097164: ammonium ion metabolic process0.00E+00
3GO:0045184: establishment of protein localization0.00E+00
4GO:0015843: methylammonium transport0.00E+00
5GO:0031222: arabinan catabolic process0.00E+00
6GO:0042794: rRNA transcription from plastid promoter0.00E+00
7GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
8GO:0044154: histone H3-K14 acetylation0.00E+00
9GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
10GO:0090627: plant epidermal cell differentiation0.00E+00
11GO:0009606: tropism0.00E+00
12GO:0090322: regulation of superoxide metabolic process0.00E+00
13GO:0000372: Group I intron splicing0.00E+00
14GO:1903224: regulation of endodermal cell differentiation0.00E+00
15GO:1901698: response to nitrogen compound0.00E+00
16GO:0043972: histone H3-K23 acetylation0.00E+00
17GO:0080127: fruit septum development0.00E+00
18GO:0007638: mechanosensory behavior0.00E+00
19GO:0010480: microsporocyte differentiation0.00E+00
20GO:0042793: transcription from plastid promoter1.06E-09
21GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.50E-09
22GO:0009734: auxin-activated signaling pathway3.37E-07
23GO:0046620: regulation of organ growth1.32E-06
24GO:0009658: chloroplast organization1.24E-05
25GO:0006468: protein phosphorylation2.53E-05
26GO:0048437: floral organ development3.95E-05
27GO:0009451: RNA modification1.32E-04
28GO:2000038: regulation of stomatal complex development2.26E-04
29GO:0009733: response to auxin2.41E-04
30GO:0009926: auxin polar transport2.77E-04
31GO:0032502: developmental process2.86E-04
32GO:0009913: epidermal cell differentiation4.74E-04
33GO:0040008: regulation of growth5.40E-04
34GO:0009416: response to light stimulus5.65E-04
35GO:0034971: histone H3-R17 methylation6.76E-04
36GO:0033206: meiotic cytokinesis6.76E-04
37GO:1903866: palisade mesophyll development6.76E-04
38GO:0035987: endodermal cell differentiation6.76E-04
39GO:0006436: tryptophanyl-tRNA aminoacylation6.76E-04
40GO:0010342: endosperm cellularization6.76E-04
41GO:0034757: negative regulation of iron ion transport6.76E-04
42GO:0034970: histone H3-R2 methylation6.76E-04
43GO:0042659: regulation of cell fate specification6.76E-04
44GO:0034972: histone H3-R26 methylation6.76E-04
45GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.76E-04
46GO:0010063: positive regulation of trichoblast fate specification6.76E-04
47GO:0043971: histone H3-K18 acetylation6.76E-04
48GO:0090558: plant epidermis development6.76E-04
49GO:0006955: immune response8.02E-04
50GO:0042255: ribosome assembly9.96E-04
51GO:0007389: pattern specification process1.21E-03
52GO:0010305: leaf vascular tissue pattern formation1.38E-03
53GO:0000373: Group II intron splicing1.45E-03
54GO:0048507: meristem development1.45E-03
55GO:0000902: cell morphogenesis1.45E-03
56GO:1904143: positive regulation of carotenoid biosynthetic process1.46E-03
57GO:0080009: mRNA methylation1.46E-03
58GO:0009786: regulation of asymmetric cell division1.46E-03
59GO:0048439: flower morphogenesis1.46E-03
60GO:0006529: asparagine biosynthetic process1.46E-03
61GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.46E-03
62GO:2000123: positive regulation of stomatal complex development1.46E-03
63GO:0010254: nectary development1.46E-03
64GO:0070981: L-asparagine biosynthetic process1.46E-03
65GO:0010271: regulation of chlorophyll catabolic process1.46E-03
66GO:1902326: positive regulation of chlorophyll biosynthetic process1.46E-03
67GO:0018026: peptidyl-lysine monomethylation1.46E-03
68GO:0010569: regulation of double-strand break repair via homologous recombination1.46E-03
69GO:0071497: cellular response to freezing1.46E-03
70GO:0009662: etioplast organization1.46E-03
71GO:1900033: negative regulation of trichome patterning1.46E-03
72GO:0010434: bract formation1.46E-03
73GO:0030422: production of siRNA involved in RNA interference2.01E-03
74GO:0048829: root cap development2.01E-03
75GO:0010252: auxin homeostasis2.31E-03
76GO:0048229: gametophyte development2.33E-03
77GO:0001578: microtubule bundle formation2.40E-03
78GO:0071705: nitrogen compound transport2.40E-03
79GO:0009954: proximal/distal pattern formation2.40E-03
80GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.40E-03
81GO:0080117: secondary growth2.40E-03
82GO:0090708: specification of plant organ axis polarity2.40E-03
83GO:0090391: granum assembly2.40E-03
84GO:0010589: leaf proximal/distal pattern formation2.40E-03
85GO:0042780: tRNA 3'-end processing2.40E-03
86GO:0010582: floral meristem determinacy2.67E-03
87GO:0010027: thylakoid membrane organization2.90E-03
88GO:0010075: regulation of meristem growth3.04E-03
89GO:0009934: regulation of meristem structural organization3.43E-03
90GO:0031048: chromatin silencing by small RNA3.49E-03
91GO:1902476: chloride transmembrane transport3.49E-03
92GO:0010071: root meristem specification3.49E-03
93GO:0051513: regulation of monopolar cell growth3.49E-03
94GO:0007231: osmosensory signaling pathway3.49E-03
95GO:0009800: cinnamic acid biosynthetic process3.49E-03
96GO:0010239: chloroplast mRNA processing3.49E-03
97GO:0044211: CTP salvage3.49E-03
98GO:0015696: ammonium transport3.49E-03
99GO:0019048: modulation by virus of host morphology or physiology3.49E-03
100GO:0046739: transport of virus in multicellular host3.49E-03
101GO:2000904: regulation of starch metabolic process3.49E-03
102GO:0051289: protein homotetramerization3.49E-03
103GO:0006351: transcription, DNA-templated3.59E-03
104GO:0006355: regulation of transcription, DNA-templated3.77E-03
105GO:0080188: RNA-directed DNA methylation3.85E-03
106GO:0048481: plant ovule development4.09E-03
107GO:0000160: phosphorelay signal transduction system4.36E-03
108GO:0009742: brassinosteroid mediated signaling pathway4.48E-03
109GO:0006346: methylation-dependent chromatin silencing4.72E-03
110GO:0044206: UMP salvage4.72E-03
111GO:1901141: regulation of lignin biosynthetic process4.72E-03
112GO:0006479: protein methylation4.72E-03
113GO:0048629: trichome patterning4.72E-03
114GO:1900864: mitochondrial RNA modification4.72E-03
115GO:0051322: anaphase4.72E-03
116GO:0030104: water homeostasis4.72E-03
117GO:0071249: cellular response to nitrate4.72E-03
118GO:0033500: carbohydrate homeostasis4.72E-03
119GO:0035279: mRNA cleavage involved in gene silencing by miRNA4.72E-03
120GO:0046656: folic acid biosynthetic process4.72E-03
121GO:0072488: ammonium transmembrane transport4.72E-03
122GO:0000914: phragmoplast assembly4.72E-03
123GO:0006021: inositol biosynthetic process4.72E-03
124GO:0051567: histone H3-K9 methylation4.72E-03
125GO:0009944: polarity specification of adaxial/abaxial axis4.78E-03
126GO:0016998: cell wall macromolecule catabolic process5.81E-03
127GO:0006306: DNA methylation5.81E-03
128GO:0048497: maintenance of floral organ identity6.06E-03
129GO:0006544: glycine metabolic process6.06E-03
130GO:1902183: regulation of shoot apical meristem development6.06E-03
131GO:0016123: xanthophyll biosynthetic process6.06E-03
132GO:0032876: negative regulation of DNA endoreduplication6.06E-03
133GO:0030308: negative regulation of cell growth6.06E-03
134GO:0010375: stomatal complex patterning6.06E-03
135GO:0009616: virus induced gene silencing6.06E-03
136GO:0016310: phosphorylation6.78E-03
137GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.96E-03
138GO:0010082: regulation of root meristem growth6.96E-03
139GO:0009790: embryo development7.33E-03
140GO:0018258: protein O-linked glycosylation via hydroxyproline7.53E-03
141GO:0006563: L-serine metabolic process7.53E-03
142GO:0010405: arabinogalactan protein metabolic process7.53E-03
143GO:0010304: PSII associated light-harvesting complex II catabolic process7.53E-03
144GO:0006655: phosphatidylglycerol biosynthetic process7.53E-03
145GO:1902456: regulation of stomatal opening7.53E-03
146GO:0048831: regulation of shoot system development7.53E-03
147GO:0003006: developmental process involved in reproduction7.53E-03
148GO:0016554: cytidine to uridine editing7.53E-03
149GO:0042176: regulation of protein catabolic process7.53E-03
150GO:0010315: auxin efflux7.53E-03
151GO:0016458: gene silencing7.53E-03
152GO:0009643: photosynthetic acclimation7.53E-03
153GO:0006559: L-phenylalanine catabolic process7.53E-03
154GO:0006206: pyrimidine nucleobase metabolic process7.53E-03
155GO:0048653: anther development8.89E-03
156GO:2000033: regulation of seed dormancy process9.11E-03
157GO:1901259: chloroplast rRNA processing9.11E-03
158GO:2000037: regulation of stomatal complex patterning9.11E-03
159GO:0010310: regulation of hydrogen peroxide metabolic process9.11E-03
160GO:2000067: regulation of root morphogenesis9.11E-03
161GO:0009955: adaxial/abaxial pattern specification9.11E-03
162GO:0071470: cellular response to osmotic stress9.11E-03
163GO:0010067: procambium histogenesis9.11E-03
164GO:0048509: regulation of meristem development9.11E-03
165GO:0046654: tetrahydrofolate biosynthetic process9.11E-03
166GO:0030488: tRNA methylation9.11E-03
167GO:0009741: response to brassinosteroid9.60E-03
168GO:0009646: response to absence of light1.03E-02
169GO:0009396: folic acid-containing compound biosynthetic process1.08E-02
170GO:0035196: production of miRNAs involved in gene silencing by miRNA1.08E-02
171GO:0010103: stomatal complex morphogenesis1.08E-02
172GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.08E-02
173GO:0009610: response to symbiotic fungus1.08E-02
174GO:0006821: chloride transport1.08E-02
175GO:0048825: cotyledon development1.11E-02
176GO:0009736: cytokinin-activated signaling pathway1.13E-02
177GO:0008380: RNA splicing1.24E-02
178GO:0030162: regulation of proteolysis1.26E-02
179GO:0006353: DNA-templated transcription, termination1.26E-02
180GO:0048766: root hair initiation1.26E-02
181GO:0055075: potassium ion homeostasis1.26E-02
182GO:0000105: histidine biosynthetic process1.26E-02
183GO:0009938: negative regulation of gibberellic acid mediated signaling pathway1.26E-02
184GO:0001522: pseudouridine synthesis1.26E-02
185GO:0009909: regulation of flower development1.28E-02
186GO:0009828: plant-type cell wall loosening1.45E-02
187GO:0010093: specification of floral organ identity1.45E-02
188GO:0009880: embryonic pattern specification1.45E-02
189GO:0009827: plant-type cell wall modification1.45E-02
190GO:0001510: RNA methylation1.45E-02
191GO:0010497: plasmodesmata-mediated intercellular transport1.45E-02
192GO:0044030: regulation of DNA methylation1.45E-02
193GO:0048364: root development1.61E-02
194GO:0051607: defense response to virus1.63E-02
195GO:0000910: cytokinesis1.63E-02
196GO:0009051: pentose-phosphate shunt, oxidative branch1.65E-02
197GO:0009245: lipid A biosynthetic process1.65E-02
198GO:2000024: regulation of leaf development1.65E-02
199GO:0010029: regulation of seed germination1.83E-02
200GO:0031425: chloroplast RNA processing1.86E-02
201GO:0042761: very long-chain fatty acid biosynthetic process1.86E-02
202GO:0009638: phototropism1.86E-02
203GO:2000280: regulation of root development1.86E-02
204GO:0006349: regulation of gene expression by genetic imprinting1.86E-02
205GO:0035999: tetrahydrofolate interconversion1.86E-02
206GO:1900865: chloroplast RNA modification1.86E-02
207GO:0010411: xyloglucan metabolic process2.04E-02
208GO:0009641: shade avoidance2.07E-02
209GO:0006949: syncytium formation2.07E-02
210GO:0010048: vernalization response2.07E-02
211GO:0006535: cysteine biosynthetic process from serine2.07E-02
212GO:0009723: response to ethylene2.28E-02
213GO:0010015: root morphogenesis2.30E-02
214GO:0006816: calcium ion transport2.30E-02
215GO:0009058: biosynthetic process2.51E-02
216GO:0008361: regulation of cell size2.53E-02
217GO:0006790: sulfur compound metabolic process2.53E-02
218GO:0015706: nitrate transport2.53E-02
219GO:0016024: CDP-diacylglycerol biosynthetic process2.53E-02
220GO:0010102: lateral root morphogenesis2.77E-02
221GO:0009785: blue light signaling pathway2.77E-02
222GO:0009691: cytokinin biosynthetic process2.77E-02
223GO:0009767: photosynthetic electron transport chain2.77E-02
224GO:0010588: cotyledon vascular tissue pattern formation2.77E-02
225GO:0006006: glucose metabolic process2.77E-02
226GO:0010223: secondary shoot formation3.02E-02
227GO:0006270: DNA replication initiation3.02E-02
228GO:0048467: gynoecium development3.02E-02
229GO:0010207: photosystem II assembly3.02E-02
230GO:0006541: glutamine metabolic process3.02E-02
231GO:0010020: chloroplast fission3.02E-02
232GO:0090351: seedling development3.28E-02
233GO:0070588: calcium ion transmembrane transport3.28E-02
234GO:0046854: phosphatidylinositol phosphorylation3.28E-02
235GO:0010167: response to nitrate3.28E-02
236GO:0045892: negative regulation of transcription, DNA-templated3.37E-02
237GO:0006071: glycerol metabolic process3.54E-02
238GO:0006833: water transport3.54E-02
239GO:0009640: photomorphogenesis3.70E-02
240GO:2000377: regulation of reactive oxygen species metabolic process3.81E-02
241GO:0010187: negative regulation of seed germination3.81E-02
242GO:0005992: trehalose biosynthetic process3.81E-02
243GO:0019344: cysteine biosynthetic process3.81E-02
244GO:0080147: root hair cell development3.81E-02
245GO:0009863: salicylic acid mediated signaling pathway3.81E-02
246GO:0042546: cell wall biogenesis3.85E-02
247GO:0009739: response to gibberellin4.04E-02
248GO:0051302: regulation of cell division4.09E-02
249GO:0006418: tRNA aminoacylation for protein translation4.09E-02
250GO:0007166: cell surface receptor signaling pathway4.14E-02
251GO:0003333: amino acid transmembrane transport4.37E-02
252GO:0009664: plant-type cell wall organization4.63E-02
253GO:0042538: hyperosmotic salinity response4.63E-02
254GO:0031348: negative regulation of defense response4.67E-02
255GO:0001944: vasculature development4.96E-02
256GO:0010227: floral organ abscission4.96E-02
257GO:0071215: cellular response to abscisic acid stimulus4.96E-02
RankGO TermAdjusted P value
1GO:0004401: histidinol-phosphatase activity0.00E+00
2GO:0070009: serine-type aminopeptidase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0071633: dihydroceramidase activity0.00E+00
5GO:0042834: peptidoglycan binding0.00E+00
6GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
7GO:0004674: protein serine/threonine kinase activity1.09E-05
8GO:0003723: RNA binding7.37E-05
9GO:0003727: single-stranded RNA binding1.17E-04
10GO:0016301: kinase activity2.51E-04
11GO:0004519: endonuclease activity5.25E-04
12GO:0052381: tRNA dimethylallyltransferase activity6.76E-04
13GO:0010347: L-galactose-1-phosphate phosphatase activity6.76E-04
14GO:0004016: adenylate cyclase activity6.76E-04
15GO:0016274: protein-arginine N-methyltransferase activity6.76E-04
16GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.76E-04
17GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.76E-04
18GO:0004156: dihydropteroate synthase activity6.76E-04
19GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity6.76E-04
20GO:0004071: aspartate-ammonia ligase activity6.76E-04
21GO:0004830: tryptophan-tRNA ligase activity6.76E-04
22GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.46E-03
23GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.46E-03
24GO:0009884: cytokinin receptor activity1.46E-03
25GO:0035241: protein-arginine omega-N monomethyltransferase activity1.46E-03
26GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.46E-03
27GO:0052832: inositol monophosphate 3-phosphatase activity1.46E-03
28GO:0008805: carbon-monoxide oxygenase activity1.46E-03
29GO:0008934: inositol monophosphate 1-phosphatase activity1.46E-03
30GO:0052833: inositol monophosphate 4-phosphatase activity1.46E-03
31GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.46E-03
32GO:0015929: hexosaminidase activity1.46E-03
33GO:0004563: beta-N-acetylhexosaminidase activity1.46E-03
34GO:0004672: protein kinase activity1.52E-03
35GO:0009672: auxin:proton symporter activity1.72E-03
36GO:0016805: dipeptidase activity2.40E-03
37GO:0005034: osmosensor activity2.40E-03
38GO:0008469: histone-arginine N-methyltransferase activity2.40E-03
39GO:0004180: carboxypeptidase activity2.40E-03
40GO:0017150: tRNA dihydrouridine synthase activity2.40E-03
41GO:0045548: phenylalanine ammonia-lyase activity2.40E-03
42GO:0042781: 3'-tRNA processing endoribonuclease activity2.40E-03
43GO:0010329: auxin efflux transmembrane transporter activity3.04E-03
44GO:0009982: pseudouridine synthase activity3.04E-03
45GO:0003725: double-stranded RNA binding3.04E-03
46GO:0035197: siRNA binding3.49E-03
47GO:0001872: (1->3)-beta-D-glucan binding3.49E-03
48GO:0005354: galactose transmembrane transporter activity3.49E-03
49GO:0005524: ATP binding3.53E-03
50GO:0005515: protein binding3.67E-03
51GO:0046556: alpha-L-arabinofuranosidase activity4.72E-03
52GO:0016279: protein-lysine N-methyltransferase activity4.72E-03
53GO:0004845: uracil phosphoribosyltransferase activity4.72E-03
54GO:0004345: glucose-6-phosphate dehydrogenase activity4.72E-03
55GO:0010385: double-stranded methylated DNA binding4.72E-03
56GO:0005253: anion channel activity4.72E-03
57GO:0019199: transmembrane receptor protein kinase activity4.72E-03
58GO:0008168: methyltransferase activity4.87E-03
59GO:0019843: rRNA binding5.79E-03
60GO:0033612: receptor serine/threonine kinase binding5.81E-03
61GO:0004372: glycine hydroxymethyltransferase activity6.06E-03
62GO:0016773: phosphotransferase activity, alcohol group as acceptor6.06E-03
63GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding7.05E-03
64GO:0008519: ammonium transmembrane transporter activity7.53E-03
65GO:0005247: voltage-gated chloride channel activity7.53E-03
66GO:0003688: DNA replication origin binding7.53E-03
67GO:0004605: phosphatidate cytidylyltransferase activity7.53E-03
68GO:1990714: hydroxyproline O-galactosyltransferase activity7.53E-03
69GO:0031177: phosphopantetheine binding7.53E-03
70GO:0003700: transcription factor activity, sequence-specific DNA binding8.16E-03
71GO:0043621: protein self-association8.49E-03
72GO:0019900: kinase binding9.11E-03
73GO:0004124: cysteine synthase activity9.11E-03
74GO:0008195: phosphatidate phosphatase activity9.11E-03
75GO:0004849: uridine kinase activity9.11E-03
76GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity9.11E-03
77GO:0000035: acyl binding9.11E-03
78GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity9.11E-03
79GO:0004656: procollagen-proline 4-dioxygenase activity9.11E-03
80GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds9.25E-03
81GO:0001085: RNA polymerase II transcription factor binding9.60E-03
82GO:0003677: DNA binding1.16E-02
83GO:0003690: double-stranded DNA binding1.18E-02
84GO:0016762: xyloglucan:xyloglucosyl transferase activity1.19E-02
85GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.26E-02
86GO:0000156: phosphorelay response regulator activity1.36E-02
87GO:0008173: RNA methyltransferase activity1.45E-02
88GO:0004650: polygalacturonase activity1.58E-02
89GO:0000989: transcription factor activity, transcription factor binding1.65E-02
90GO:0008889: glycerophosphodiester phosphodiesterase activity1.65E-02
91GO:0003735: structural constituent of ribosome1.97E-02
92GO:0003682: chromatin binding1.99E-02
93GO:0016798: hydrolase activity, acting on glycosyl bonds2.04E-02
94GO:0008171: O-methyltransferase activity2.07E-02
95GO:0004673: protein histidine kinase activity2.07E-02
96GO:0004805: trehalose-phosphatase activity2.07E-02
97GO:0005089: Rho guanyl-nucleotide exchange factor activity2.30E-02
98GO:0004222: metalloendopeptidase activity2.50E-02
99GO:0004521: endoribonuclease activity2.53E-02
100GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.62E-02
101GO:0031072: heat shock protein binding2.77E-02
102GO:0000155: phosphorelay sensor kinase activity2.77E-02
103GO:0005262: calcium channel activity2.77E-02
104GO:0004022: alcohol dehydrogenase (NAD) activity2.77E-02
105GO:0005215: transporter activity2.80E-02
106GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.87E-02
107GO:0003697: single-stranded DNA binding2.87E-02
108GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.02E-02
109GO:0004712: protein serine/threonine/tyrosine kinase activity3.13E-02
110GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.22E-02
111GO:0042393: histone binding3.27E-02
112GO:0004871: signal transducer activity3.53E-02
113GO:0008017: microtubule binding3.72E-02
114GO:0031418: L-ascorbic acid binding3.81E-02
115GO:0043424: protein histidine kinase binding4.09E-02
116GO:0005345: purine nucleobase transmembrane transporter activity4.09E-02
117GO:0035251: UDP-glucosyltransferase activity4.37E-02
118GO:0004176: ATP-dependent peptidase activity4.37E-02
119GO:0030570: pectate lyase activity4.96E-02
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Gene type



Gene DE type