Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G41460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046460: neutral lipid biosynthetic process0.00E+00
2GO:0090071: negative regulation of ribosome biogenesis0.00E+00
3GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
4GO:0031116: positive regulation of microtubule polymerization0.00E+00
5GO:0010068: protoderm histogenesis0.00E+00
6GO:0042817: pyridoxal metabolic process0.00E+00
7GO:2001294: malonyl-CoA catabolic process0.00E+00
8GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
9GO:0071311: cellular response to acetate0.00E+00
10GO:0070979: protein K11-linked ubiquitination0.00E+00
11GO:0071260: cellular response to mechanical stimulus0.00E+00
12GO:0043488: regulation of mRNA stability0.00E+00
13GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
14GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
15GO:0009734: auxin-activated signaling pathway2.51E-07
16GO:0009733: response to auxin1.71E-06
17GO:2000012: regulation of auxin polar transport7.70E-06
18GO:0009658: chloroplast organization1.95E-05
19GO:0046620: regulation of organ growth2.92E-05
20GO:1900865: chloroplast RNA modification7.31E-05
21GO:0006415: translational termination1.17E-04
22GO:0022622: root system development1.43E-04
23GO:0040008: regulation of growth2.15E-04
24GO:0042372: phylloquinone biosynthetic process4.12E-04
25GO:0071028: nuclear mRNA surveillance5.09E-04
26GO:0043266: regulation of potassium ion transport5.09E-04
27GO:0006659: phosphatidylserine biosynthetic process5.09E-04
28GO:0042371: vitamin K biosynthetic process5.09E-04
29GO:0043087: regulation of GTPase activity5.09E-04
30GO:2000021: regulation of ion homeostasis5.09E-04
31GO:0034080: CENP-A containing nucleosome assembly5.09E-04
32GO:0000066: mitochondrial ornithine transport5.09E-04
33GO:1902458: positive regulation of stomatal opening5.09E-04
34GO:0006177: GMP biosynthetic process5.09E-04
35GO:0006747: FAD biosynthetic process5.09E-04
36GO:0006419: alanyl-tRNA aminoacylation5.09E-04
37GO:0051171: regulation of nitrogen compound metabolic process5.09E-04
38GO:0000476: maturation of 4.5S rRNA5.09E-04
39GO:0000967: rRNA 5'-end processing5.09E-04
40GO:0051418: microtubule nucleation by microtubule organizing center5.09E-04
41GO:0006400: tRNA modification5.29E-04
42GO:0032880: regulation of protein localization5.29E-04
43GO:0032544: plastid translation8.02E-04
44GO:0009958: positive gravitropism8.06E-04
45GO:0000373: Group II intron splicing9.59E-04
46GO:1900871: chloroplast mRNA modification1.10E-03
47GO:0007154: cell communication1.10E-03
48GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation1.10E-03
49GO:1900033: negative regulation of trichome patterning1.10E-03
50GO:0009220: pyrimidine ribonucleotide biosynthetic process1.10E-03
51GO:0031125: rRNA 3'-end processing1.10E-03
52GO:1903426: regulation of reactive oxygen species biosynthetic process1.10E-03
53GO:0015804: neutral amino acid transport1.10E-03
54GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.10E-03
55GO:0034470: ncRNA processing1.10E-03
56GO:0006739: NADP metabolic process1.10E-03
57GO:0034475: U4 snRNA 3'-end processing1.10E-03
58GO:0033566: gamma-tubulin complex localization1.10E-03
59GO:1901657: glycosyl compound metabolic process1.24E-03
60GO:0009773: photosynthetic electron transport in photosystem I1.52E-03
61GO:0071230: cellular response to amino acid stimulus1.79E-03
62GO:0031145: anaphase-promoting complex-dependent catabolic process1.79E-03
63GO:0006753: nucleoside phosphate metabolic process1.79E-03
64GO:0001578: microtubule bundle formation1.79E-03
65GO:0045493: xylan catabolic process1.79E-03
66GO:0006760: folic acid-containing compound metabolic process1.79E-03
67GO:0007052: mitotic spindle organization1.79E-03
68GO:0016075: rRNA catabolic process1.79E-03
69GO:0033591: response to L-ascorbic acid1.79E-03
70GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.79E-03
71GO:0051127: positive regulation of actin nucleation1.79E-03
72GO:1902448: positive regulation of shade avoidance1.79E-03
73GO:0007275: multicellular organism development2.56E-03
74GO:0009226: nucleotide-sugar biosynthetic process2.60E-03
75GO:0048645: animal organ formation2.60E-03
76GO:0090307: mitotic spindle assembly2.60E-03
77GO:0008615: pyridoxine biosynthetic process2.60E-03
78GO:0010255: glucose mediated signaling pathway2.60E-03
79GO:0006168: adenine salvage2.60E-03
80GO:0016556: mRNA modification2.60E-03
81GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center2.60E-03
82GO:0034508: centromere complex assembly2.60E-03
83GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.60E-03
84GO:0006166: purine ribonucleoside salvage2.60E-03
85GO:0030071: regulation of mitotic metaphase/anaphase transition2.60E-03
86GO:0051639: actin filament network formation2.60E-03
87GO:0046653: tetrahydrofolate metabolic process2.60E-03
88GO:0048527: lateral root development2.84E-03
89GO:0005992: trehalose biosynthetic process3.10E-03
90GO:0046656: folic acid biosynthetic process3.50E-03
91GO:0006021: inositol biosynthetic process3.50E-03
92GO:0007020: microtubule nucleation3.50E-03
93GO:0006734: NADH metabolic process3.50E-03
94GO:0044205: 'de novo' UMP biosynthetic process3.50E-03
95GO:0048629: trichome patterning3.50E-03
96GO:0051764: actin crosslink formation3.50E-03
97GO:0051322: anaphase3.50E-03
98GO:0015846: polyamine transport3.50E-03
99GO:0006839: mitochondrial transport3.77E-03
100GO:0009926: auxin polar transport4.41E-03
101GO:0046785: microtubule polymerization4.49E-03
102GO:0010236: plastoquinone biosynthetic process4.49E-03
103GO:0045038: protein import into chloroplast thylakoid membrane4.49E-03
104GO:0016123: xanthophyll biosynthetic process4.49E-03
105GO:0044209: AMP salvage4.49E-03
106GO:0010158: abaxial cell fate specification4.49E-03
107GO:0032876: negative regulation of DNA endoreduplication4.49E-03
108GO:0009789: positive regulation of abscisic acid-activated signaling pathway5.32E-03
109GO:0008284: positive regulation of cell proliferation5.32E-03
110GO:0016554: cytidine to uridine editing5.56E-03
111GO:0009920: cell plate formation involved in plant-type cell wall biogenesis5.56E-03
112GO:0032973: amino acid export5.56E-03
113GO:0000741: karyogamy5.56E-03
114GO:0010264: myo-inositol hexakisphosphate biosynthetic process5.56E-03
115GO:0006655: phosphatidylglycerol biosynthetic process5.56E-03
116GO:0010087: phloem or xylem histogenesis5.75E-03
117GO:0009416: response to light stimulus6.22E-03
118GO:0034389: lipid particle organization6.71E-03
119GO:0017148: negative regulation of translation6.71E-03
120GO:0046654: tetrahydrofolate biosynthetic process6.71E-03
121GO:0080086: stamen filament development6.71E-03
122GO:0009648: photoperiodism6.71E-03
123GO:0010050: vegetative phase change7.95E-03
124GO:0015937: coenzyme A biosynthetic process7.95E-03
125GO:0010196: nonphotochemical quenching7.95E-03
126GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.95E-03
127GO:0030307: positive regulation of cell growth7.95E-03
128GO:0048528: post-embryonic root development7.95E-03
129GO:0009772: photosynthetic electron transport in photosystem II7.95E-03
130GO:0043090: amino acid import7.95E-03
131GO:0005975: carbohydrate metabolic process8.72E-03
132GO:0071555: cell wall organization9.08E-03
133GO:0009850: auxin metabolic process9.25E-03
134GO:0042255: ribosome assembly9.25E-03
135GO:0010078: maintenance of root meristem identity9.25E-03
136GO:0006353: DNA-templated transcription, termination9.25E-03
137GO:0009704: de-etiolation9.25E-03
138GO:0032875: regulation of DNA endoreduplication9.25E-03
139GO:0070413: trehalose metabolism in response to stress9.25E-03
140GO:2000070: regulation of response to water deprivation9.25E-03
141GO:0009231: riboflavin biosynthetic process9.25E-03
142GO:0009657: plastid organization1.06E-02
143GO:0006526: arginine biosynthetic process1.06E-02
144GO:0043562: cellular response to nitrogen levels1.06E-02
145GO:0080144: amino acid homeostasis1.21E-02
146GO:0019432: triglyceride biosynthetic process1.21E-02
147GO:0009627: systemic acquired resistance1.25E-02
148GO:0010380: regulation of chlorophyll biosynthetic process1.36E-02
149GO:0009638: phototropism1.36E-02
150GO:0042761: very long-chain fatty acid biosynthetic process1.36E-02
151GO:0006535: cysteine biosynthetic process from serine1.52E-02
152GO:0045036: protein targeting to chloroplast1.52E-02
153GO:0006949: syncytium formation1.52E-02
154GO:0006816: calcium ion transport1.68E-02
155GO:1903507: negative regulation of nucleic acid-templated transcription1.68E-02
156GO:0009684: indoleacetic acid biosynthetic process1.68E-02
157GO:0016024: CDP-diacylglycerol biosynthetic process1.85E-02
158GO:0045037: protein import into chloroplast stroma1.85E-02
159GO:0010582: floral meristem determinacy1.85E-02
160GO:0010588: cotyledon vascular tissue pattern formation2.03E-02
161GO:0010628: positive regulation of gene expression2.03E-02
162GO:0009785: blue light signaling pathway2.03E-02
163GO:0030036: actin cytoskeleton organization2.03E-02
164GO:0010020: chloroplast fission2.21E-02
165GO:0048467: gynoecium development2.21E-02
166GO:0008283: cell proliferation2.39E-02
167GO:0019853: L-ascorbic acid biosynthetic process2.40E-02
168GO:0090351: seedling development2.40E-02
169GO:0010030: positive regulation of seed germination2.40E-02
170GO:0007166: cell surface receptor signaling pathway2.41E-02
171GO:0010025: wax biosynthetic process2.59E-02
172GO:0009833: plant-type primary cell wall biogenesis2.59E-02
173GO:0006071: glycerol metabolic process2.59E-02
174GO:0030150: protein import into mitochondrial matrix2.79E-02
175GO:0007010: cytoskeleton organization2.79E-02
176GO:0051017: actin filament bundle assembly2.79E-02
177GO:0010187: negative regulation of seed germination2.79E-02
178GO:0019344: cysteine biosynthetic process2.79E-02
179GO:0009116: nucleoside metabolic process2.79E-02
180GO:0006874: cellular calcium ion homeostasis2.99E-02
181GO:0043622: cortical microtubule organization2.99E-02
182GO:0003333: amino acid transmembrane transport3.20E-02
183GO:2000022: regulation of jasmonic acid mediated signaling pathway3.42E-02
184GO:0006730: one-carbon metabolic process3.42E-02
185GO:0031348: negative regulation of defense response3.42E-02
186GO:0010082: regulation of root meristem growth3.64E-02
187GO:0009686: gibberellin biosynthetic process3.64E-02
188GO:0006012: galactose metabolic process3.64E-02
189GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.64E-02
190GO:0019722: calcium-mediated signaling3.86E-02
191GO:0009306: protein secretion3.86E-02
192GO:0010214: seed coat development3.86E-02
193GO:0048367: shoot system development3.93E-02
194GO:0016117: carotenoid biosynthetic process4.08E-02
195GO:0070417: cellular response to cold4.08E-02
196GO:0000226: microtubule cytoskeleton organization4.32E-02
197GO:0042335: cuticle development4.32E-02
198GO:0000271: polysaccharide biosynthetic process4.32E-02
199GO:0080022: primary root development4.32E-02
200GO:0008033: tRNA processing4.32E-02
201GO:0034220: ion transmembrane transport4.32E-02
202GO:0042631: cellular response to water deprivation4.32E-02
203GO:0045489: pectin biosynthetic process4.55E-02
204GO:0010197: polar nucleus fusion4.55E-02
205GO:0010268: brassinosteroid homeostasis4.55E-02
206GO:0006396: RNA processing4.71E-02
RankGO TermAdjusted P value
1GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
2GO:0008115: sarcosine oxidase activity0.00E+00
3GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
4GO:0019808: polyamine binding0.00E+00
5GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
6GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
7GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
8GO:0015276: ligand-gated ion channel activity0.00E+00
9GO:0004358: glutamate N-acetyltransferase activity0.00E+00
10GO:0010349: L-galactose dehydrogenase activity0.00E+00
11GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
12GO:0003747: translation release factor activity5.58E-05
13GO:0016149: translation release factor activity, codon specific8.23E-05
14GO:0008066: glutamate receptor activity5.09E-04
15GO:0004813: alanine-tRNA ligase activity5.09E-04
16GO:0005290: L-histidine transmembrane transporter activity5.09E-04
17GO:0003867: 4-aminobutyrate transaminase activity5.09E-04
18GO:0052856: NADHX epimerase activity5.09E-04
19GO:0052857: NADPHX epimerase activity5.09E-04
20GO:0050139: nicotinate-N-glucosyltransferase activity5.09E-04
21GO:0004733: pyridoxamine-phosphate oxidase activity5.09E-04
22GO:0010945: CoA pyrophosphatase activity5.09E-04
23GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.09E-04
24GO:0051777: ent-kaurenoate oxidase activity5.09E-04
25GO:0043022: ribosome binding6.59E-04
26GO:0003919: FMN adenylyltransferase activity1.10E-03
27GO:0004150: dihydroneopterin aldolase activity1.10E-03
28GO:0000064: L-ornithine transmembrane transporter activity1.10E-03
29GO:0004512: inositol-3-phosphate synthase activity1.10E-03
30GO:0015172: acidic amino acid transmembrane transporter activity1.10E-03
31GO:0050017: L-3-cyanoalanine synthase activity1.10E-03
32GO:0010291: carotene beta-ring hydroxylase activity1.10E-03
33GO:0017118: lipoyltransferase activity1.10E-03
34GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.10E-03
35GO:0009977: proton motive force dependent protein transmembrane transporter activity1.10E-03
36GO:0003938: IMP dehydrogenase activity1.10E-03
37GO:0102083: 7,8-dihydromonapterin aldolase activity1.10E-03
38GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.10E-03
39GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.10E-03
40GO:0004805: trehalose-phosphatase activity1.32E-03
41GO:0004557: alpha-galactosidase activity1.79E-03
42GO:0052692: raffinose alpha-galactosidase activity1.79E-03
43GO:0102483: scopolin beta-glucosidase activity2.06E-03
44GO:0008083: growth factor activity2.24E-03
45GO:0003999: adenine phosphoribosyltransferase activity2.60E-03
46GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity2.60E-03
47GO:0015181: arginine transmembrane transporter activity2.60E-03
48GO:0016851: magnesium chelatase activity2.60E-03
49GO:0043023: ribosomal large subunit binding2.60E-03
50GO:0015189: L-lysine transmembrane transporter activity2.60E-03
51GO:0000254: C-4 methylsterol oxidase activity2.60E-03
52GO:0015175: neutral amino acid transmembrane transporter activity2.60E-03
53GO:0016829: lyase activity3.36E-03
54GO:0009044: xylan 1,4-beta-xylosidase activity3.50E-03
55GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.50E-03
56GO:0046556: alpha-L-arabinofuranosidase activity3.50E-03
57GO:0004659: prenyltransferase activity3.50E-03
58GO:0080032: methyl jasmonate esterase activity3.50E-03
59GO:0043015: gamma-tubulin binding3.50E-03
60GO:0008422: beta-glucosidase activity3.57E-03
61GO:0004176: ATP-dependent peptidase activity3.77E-03
62GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.39E-03
63GO:0016846: carbon-sulfur lyase activity4.49E-03
64GO:0004040: amidase activity4.49E-03
65GO:0030570: pectate lyase activity4.51E-03
66GO:0000210: NAD+ diphosphatase activity5.56E-03
67GO:0016208: AMP binding5.56E-03
68GO:0042578: phosphoric ester hydrolase activity5.56E-03
69GO:0010181: FMN binding6.67E-03
70GO:0003730: mRNA 3'-UTR binding6.71E-03
71GO:0004144: diacylglycerol O-acyltransferase activity6.71E-03
72GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.71E-03
73GO:0004124: cysteine synthase activity6.71E-03
74GO:0019899: enzyme binding7.95E-03
75GO:0004033: aldo-keto reductase (NADP) activity9.25E-03
76GO:0016788: hydrolase activity, acting on ester bonds9.78E-03
77GO:0052689: carboxylic ester hydrolase activity1.53E-02
78GO:0008327: methyl-CpG binding1.68E-02
79GO:0047372: acylglycerol lipase activity1.68E-02
80GO:0000049: tRNA binding1.85E-02
81GO:0000175: 3'-5'-exoribonuclease activity2.03E-02
82GO:0004022: alcohol dehydrogenase (NAD) activity2.03E-02
83GO:0015266: protein channel activity2.03E-02
84GO:0004089: carbonate dehydratase activity2.03E-02
85GO:0031072: heat shock protein binding2.03E-02
86GO:0005262: calcium channel activity2.03E-02
87GO:0009982: pseudouridine synthase activity2.03E-02
88GO:0008017: microtubule binding2.16E-02
89GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.21E-02
90GO:0004970: ionotropic glutamate receptor activity2.40E-02
91GO:0005217: intracellular ligand-gated ion channel activity2.40E-02
92GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.59E-02
93GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.59E-02
94GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.59E-02
95GO:0043621: protein self-association2.59E-02
96GO:0003714: transcription corepressor activity2.79E-02
97GO:0005528: FK506 binding2.79E-02
98GO:0015079: potassium ion transmembrane transporter activity2.99E-02
99GO:0008408: 3'-5' exonuclease activity3.20E-02
100GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.42E-02
101GO:0015171: amino acid transmembrane transporter activity3.57E-02
102GO:0016760: cellulose synthase (UDP-forming) activity3.64E-02
103GO:0003727: single-stranded RNA binding3.86E-02
104GO:0016874: ligase activity4.31E-02
105GO:0016787: hydrolase activity4.38E-02
106GO:0008536: Ran GTPase binding4.55E-02
107GO:0001085: RNA polymerase II transcription factor binding4.55E-02
108GO:0016746: transferase activity, transferring acyl groups4.71E-02
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Gene type



Gene DE type