Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G39210

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071474: cellular hyperosmotic response0.00E+00
2GO:0009249: protein lipoylation0.00E+00
3GO:0002184: cytoplasmic translational termination0.00E+00
4GO:0090470: shoot organ boundary specification0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:0042821: pyridoxal biosynthetic process0.00E+00
7GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
8GO:0009106: lipoate metabolic process0.00E+00
9GO:0006223: uracil salvage0.00E+00
10GO:0090279: regulation of calcium ion import0.00E+00
11GO:0042820: vitamin B6 catabolic process0.00E+00
12GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.30E-08
13GO:0015995: chlorophyll biosynthetic process1.04E-06
14GO:0048564: photosystem I assembly3.03E-06
15GO:0015979: photosynthesis6.30E-05
16GO:0015671: oxygen transport2.04E-04
17GO:1904966: positive regulation of vitamin E biosynthetic process2.04E-04
18GO:0015801: aromatic amino acid transport2.04E-04
19GO:1904964: positive regulation of phytol biosynthetic process2.04E-04
20GO:0034337: RNA folding2.04E-04
21GO:0009443: pyridoxal 5'-phosphate salvage2.04E-04
22GO:0071482: cellular response to light stimulus2.11E-04
23GO:0009735: response to cytokinin3.49E-04
24GO:0009773: photosynthetic electron transport in photosystem I4.16E-04
25GO:0000256: allantoin catabolic process4.57E-04
26GO:0080183: response to photooxidative stress4.57E-04
27GO:0051262: protein tetramerization4.57E-04
28GO:1902326: positive regulation of chlorophyll biosynthetic process4.57E-04
29GO:0005977: glycogen metabolic process7.44E-04
30GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition7.44E-04
31GO:0010136: ureide catabolic process7.44E-04
32GO:0006986: response to unfolded protein1.06E-03
33GO:2001141: regulation of RNA biosynthetic process1.06E-03
34GO:0010371: regulation of gibberellin biosynthetic process1.06E-03
35GO:0051085: chaperone mediated protein folding requiring cofactor1.06E-03
36GO:0006145: purine nucleobase catabolic process1.06E-03
37GO:0009052: pentose-phosphate shunt, non-oxidative branch1.06E-03
38GO:0033014: tetrapyrrole biosynthetic process1.06E-03
39GO:1901332: negative regulation of lateral root development1.06E-03
40GO:0019748: secondary metabolic process1.10E-03
41GO:0009658: chloroplast organization1.21E-03
42GO:0055114: oxidation-reduction process1.23E-03
43GO:0010021: amylopectin biosynthetic process1.41E-03
44GO:0006536: glutamate metabolic process1.41E-03
45GO:0044206: UMP salvage1.41E-03
46GO:0045038: protein import into chloroplast thylakoid membrane1.80E-03
47GO:0009107: lipoate biosynthetic process1.80E-03
48GO:0016120: carotene biosynthetic process1.80E-03
49GO:0043097: pyrimidine nucleoside salvage1.80E-03
50GO:0000304: response to singlet oxygen1.80E-03
51GO:0080110: sporopollenin biosynthetic process1.80E-03
52GO:0046907: intracellular transport1.80E-03
53GO:0006206: pyrimidine nucleobase metabolic process2.21E-03
54GO:0006655: phosphatidylglycerol biosynthetic process2.21E-03
55GO:1901259: chloroplast rRNA processing2.66E-03
56GO:0010027: thylakoid membrane organization2.89E-03
57GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.13E-03
58GO:0009645: response to low light intensity stimulus3.13E-03
59GO:0006605: protein targeting3.63E-03
60GO:0006810: transport3.66E-03
61GO:0018298: protein-chromophore linkage3.76E-03
62GO:0009817: defense response to fungus, incompatible interaction3.76E-03
63GO:0032544: plastid translation4.15E-03
64GO:0017004: cytochrome complex assembly4.15E-03
65GO:0007568: aging4.35E-03
66GO:0006783: heme biosynthetic process4.70E-03
67GO:0019432: triglyceride biosynthetic process4.70E-03
68GO:0009821: alkaloid biosynthetic process4.70E-03
69GO:0006779: porphyrin-containing compound biosynthetic process5.27E-03
70GO:0006352: DNA-templated transcription, initiation6.48E-03
71GO:0008285: negative regulation of cell proliferation6.48E-03
72GO:0009089: lysine biosynthetic process via diaminopimelate6.48E-03
73GO:0005983: starch catabolic process7.12E-03
74GO:0016024: CDP-diacylglycerol biosynthetic process7.12E-03
75GO:0006094: gluconeogenesis7.78E-03
76GO:0009767: photosynthetic electron transport chain7.78E-03
77GO:0006807: nitrogen compound metabolic process7.78E-03
78GO:0009266: response to temperature stimulus8.47E-03
79GO:0010207: photosystem II assembly8.47E-03
80GO:0006636: unsaturated fatty acid biosynthetic process9.90E-03
81GO:0019762: glucosinolate catabolic process9.90E-03
82GO:0009116: nucleoside metabolic process1.06E-02
83GO:0009768: photosynthesis, light harvesting in photosystem I1.14E-02
84GO:0010073: meristem maintenance1.14E-02
85GO:0007017: microtubule-based process1.14E-02
86GO:0003333: amino acid transmembrane transport1.22E-02
87GO:0048511: rhythmic process1.22E-02
88GO:0061077: chaperone-mediated protein folding1.22E-02
89GO:0031408: oxylipin biosynthetic process1.22E-02
90GO:0080092: regulation of pollen tube growth1.30E-02
91GO:0016226: iron-sulfur cluster assembly1.30E-02
92GO:0009625: response to insect1.38E-02
93GO:0010227: floral organ abscission1.38E-02
94GO:0009306: protein secretion1.47E-02
95GO:0010584: pollen exine formation1.47E-02
96GO:0016117: carotenoid biosynthetic process1.55E-02
97GO:0051028: mRNA transport1.55E-02
98GO:0006412: translation1.66E-02
99GO:0006633: fatty acid biosynthetic process1.86E-02
100GO:0006413: translational initiation1.91E-02
101GO:0019252: starch biosynthetic process1.92E-02
102GO:0032502: developmental process2.11E-02
103GO:0010286: heat acclimation2.41E-02
104GO:0006950: response to stress2.94E-02
105GO:0015031: protein transport3.00E-02
106GO:0042254: ribosome biogenesis3.23E-02
107GO:0010311: lateral root formation3.27E-02
108GO:0006865: amino acid transport3.62E-02
109GO:0045087: innate immune response3.74E-02
110GO:0005975: carbohydrate metabolic process3.87E-02
111GO:0006457: protein folding3.89E-02
112GO:0030001: metal ion transport4.10E-02
113GO:0006631: fatty acid metabolic process4.22E-02
114GO:0009640: photomorphogenesis4.47E-02
115GO:0009644: response to high light intensity4.73E-02
RankGO TermAdjusted P value
1GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
2GO:0046408: chlorophyll synthetase activity0.00E+00
3GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
4GO:0005048: signal sequence binding0.00E+00
5GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
6GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
7GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
8GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
9GO:0019144: ADP-sugar diphosphatase activity0.00E+00
10GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
11GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.55E-07
12GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.97E-06
13GO:0070402: NADPH binding7.24E-06
14GO:0048038: quinone binding8.95E-06
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.13E-04
16GO:0005080: protein kinase C binding2.04E-04
17GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.04E-04
18GO:0005344: oxygen transporter activity2.04E-04
19GO:0005227: calcium activated cation channel activity2.04E-04
20GO:0016776: phosphotransferase activity, phosphate group as acceptor2.04E-04
21GO:0080042: ADP-glucose pyrophosphohydrolase activity2.04E-04
22GO:0050308: sugar-phosphatase activity2.04E-04
23GO:0004325: ferrochelatase activity2.04E-04
24GO:0004856: xylulokinase activity2.04E-04
25GO:0019203: carbohydrate phosphatase activity2.04E-04
26GO:0019843: rRNA binding3.83E-04
27GO:0017118: lipoyltransferase activity4.57E-04
28GO:0042389: omega-3 fatty acid desaturase activity4.57E-04
29GO:0080041: ADP-ribose pyrophosphohydrolase activity4.57E-04
30GO:0016415: octanoyltransferase activity4.57E-04
31GO:0015173: aromatic amino acid transmembrane transporter activity4.57E-04
32GO:0016630: protochlorophyllide reductase activity4.57E-04
33GO:0019156: isoamylase activity4.57E-04
34GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase4.57E-04
35GO:0008266: poly(U) RNA binding6.10E-04
36GO:0004751: ribose-5-phosphate isomerase activity7.44E-04
37GO:0003955: NAD(P)H dehydrogenase (quinone) activity7.44E-04
38GO:0005528: FK506 binding8.38E-04
39GO:0043023: ribosomal large subunit binding1.06E-03
40GO:0004351: glutamate decarboxylase activity1.06E-03
41GO:0016851: magnesium chelatase activity1.06E-03
42GO:0004792: thiosulfate sulfurtransferase activity1.06E-03
43GO:0001053: plastid sigma factor activity1.41E-03
44GO:0004845: uracil phosphoribosyltransferase activity1.41E-03
45GO:0016987: sigma factor activity1.41E-03
46GO:0043495: protein anchor1.41E-03
47GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.41E-03
48GO:0008374: O-acyltransferase activity1.80E-03
49GO:0016773: phosphotransferase activity, alcohol group as acceptor1.80E-03
50GO:0003959: NADPH dehydrogenase activity1.80E-03
51GO:0005275: amine transmembrane transporter activity1.80E-03
52GO:2001070: starch binding2.21E-03
53GO:0004332: fructose-bisphosphate aldolase activity2.21E-03
54GO:0004366: glycerol-3-phosphate O-acyltransferase activity2.21E-03
55GO:0004556: alpha-amylase activity2.21E-03
56GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.66E-03
57GO:0005261: cation channel activity2.66E-03
58GO:0004849: uridine kinase activity2.66E-03
59GO:0016491: oxidoreductase activity2.95E-03
60GO:0016168: chlorophyll binding3.05E-03
61GO:0019899: enzyme binding3.13E-03
62GO:0004721: phosphoprotein phosphatase activity3.40E-03
63GO:0008312: 7S RNA binding3.63E-03
64GO:0004033: aldo-keto reductase (NADP) activity3.63E-03
65GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.15E-03
66GO:0008138: protein tyrosine/serine/threonine phosphatase activity4.70E-03
67GO:0016844: strictosidine synthase activity5.27E-03
68GO:0004185: serine-type carboxypeptidase activity6.13E-03
69GO:0005089: Rho guanyl-nucleotide exchange factor activity6.48E-03
70GO:0003735: structural constituent of ribosome6.63E-03
71GO:0016787: hydrolase activity7.66E-03
72GO:0031072: heat shock protein binding7.78E-03
73GO:0031409: pigment binding9.90E-03
74GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.01E-02
75GO:0051536: iron-sulfur cluster binding1.06E-02
76GO:0051087: chaperone binding1.14E-02
77GO:0051082: unfolded protein binding1.18E-02
78GO:0022891: substrate-specific transmembrane transporter activity1.38E-02
79GO:0003756: protein disulfide isomerase activity1.47E-02
80GO:0008080: N-acetyltransferase activity1.73E-02
81GO:0050662: coenzyme binding1.82E-02
82GO:0005509: calcium ion binding1.86E-02
83GO:0003743: translation initiation factor activity2.39E-02
84GO:0005200: structural constituent of cytoskeleton2.41E-02
85GO:0003824: catalytic activity2.41E-02
86GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.16E-02
87GO:0004601: peroxidase activity3.17E-02
88GO:0016788: hydrolase activity, acting on ester bonds3.23E-02
89GO:0004222: metalloendopeptidase activity3.38E-02
90GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.50E-02
91GO:0003746: translation elongation factor activity3.74E-02
92GO:0003729: mRNA binding3.77E-02
93GO:0020037: heme binding4.10E-02
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Gene type



Gene DE type