co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G35790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043488: regulation of mRNA stability	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0018131: oxazole or thiazole biosynthetic process	0.00E+00
4	GO:0009157: deoxyribonucleoside monophosphate biosynthetic process	0.00E+00
5	GO:1901698: response to nitrogen compound	0.00E+00
6	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
7	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
8	GO:0007638: mechanosensory behavior	0.00E+00
9	GO:0010068: protoderm histogenesis	0.00E+00
10	GO:0097164: ammonium ion metabolic process	0.00E+00
11	GO:0010480: microsporocyte differentiation	0.00E+00
12	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
13	GO:0015843: methylammonium transport	0.00E+00
14	GO:0031222: arabinan catabolic process	0.00E+00
15	GO:0070979: protein K11-linked ubiquitination	0.00E+00
16	GO:0046620: regulation of organ growth	1.29E-10
17	GO:0009733: response to auxin	3.59E-10
18	GO:0009734: auxin-activated signaling pathway	4.23E-09
19	GO:0040008: regulation of growth	1.44E-07
20	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.90E-05
21	GO:0009926: auxin polar transport	3.39E-05
22	GO:0000373: Group II intron splicing	1.03E-04
23	GO:0051513: regulation of monopolar cell growth	1.30E-04
24	GO:0032502: developmental process	2.77E-04
25	GO:0009658: chloroplast organization	3.54E-04
26	GO:0006468: protein phosphorylation	3.58E-04
27	GO:0005992: trehalose biosynthetic process	5.57E-04
28	GO:0006264: mitochondrial DNA replication	6.66E-04
29	GO:0033259: plastid DNA replication	6.66E-04
30	GO:0006436: tryptophanyl-tRNA aminoacylation	6.66E-04
31	GO:0000066: mitochondrial ornithine transport	6.66E-04
32	GO:0048437: floral organ development	7.87E-04
33	GO:0042255: ribosome assembly	9.77E-04
34	GO:0071555: cell wall organization	1.25E-03
35	GO:0007275: multicellular organism development	1.40E-03
36	GO:2000123: positive regulation of stomatal complex development	1.44E-03
37	GO:0070981: L-asparagine biosynthetic process	1.44E-03
38	GO:0006423: cysteinyl-tRNA aminoacylation	1.44E-03
39	GO:0071497: cellular response to freezing	1.44E-03
40	GO:1900033: negative regulation of trichome patterning	1.44E-03
41	GO:0009786: regulation of asymmetric cell division	1.44E-03
42	GO:0006529: asparagine biosynthetic process	1.44E-03
43	GO:0009638: phototropism	1.68E-03
44	GO:0031425: chloroplast RNA processing	1.68E-03
45	GO:0009089: lysine biosynthetic process via diaminopimelate	2.28E-03
46	GO:0048229: gametophyte development	2.28E-03
47	GO:0051127: positive regulation of actin nucleation	2.37E-03
48	GO:0031145: anaphase-promoting complex-dependent catabolic process	2.37E-03
49	GO:0051604: protein maturation	2.37E-03
50	GO:0071705: nitrogen compound transport	2.37E-03
51	GO:0016050: vesicle organization	2.37E-03
52	GO:0007166: cell surface receptor signaling pathway	2.94E-03
53	GO:2000012: regulation of auxin polar transport	2.98E-03
54	GO:0010075: regulation of meristem growth	2.98E-03
55	GO:0009767: photosynthetic electron transport chain	2.98E-03
56	GO:0010020: chloroplast fission	3.36E-03
57	GO:0009934: regulation of meristem structural organization	3.36E-03
58	GO:0030071: regulation of mitotic metaphase/anaphase transition	3.44E-03
59	GO:0051639: actin filament network formation	3.44E-03
60	GO:0044211: CTP salvage	3.44E-03
61	GO:0019048: modulation by virus of host morphology or physiology	3.44E-03
62	GO:0009800: cinnamic acid biosynthetic process	3.44E-03
63	GO:0048645: animal organ formation	3.44E-03
64	GO:0015696: ammonium transport	3.44E-03
65	GO:0046739: transport of virus in multicellular host	3.44E-03
66	GO:0031048: chromatin silencing by small RNA	3.44E-03
67	GO:2000904: regulation of starch metabolic process	3.44E-03
68	GO:0043572: plastid fission	3.44E-03
69	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.44E-03
70	GO:0009067: aspartate family amino acid biosynthetic process	3.44E-03
71	GO:0007231: osmosensory signaling pathway	3.44E-03
72	GO:0010411: xyloglucan metabolic process	3.49E-03
73	GO:0090351: seedling development	3.78E-03
74	GO:0030154: cell differentiation	4.16E-03
75	GO:0000160: phosphorelay signal transduction system	4.24E-03
76	GO:0009742: brassinosteroid mediated signaling pathway	4.34E-03
77	GO:0051764: actin crosslink formation	4.65E-03
78	GO:0071249: cellular response to nitrate	4.65E-03
79	GO:0072488: ammonium transmembrane transport	4.65E-03
80	GO:0022622: root system development	4.65E-03
81	GO:0033500: carbohydrate homeostasis	4.65E-03
82	GO:2000038: regulation of stomatal complex development	4.65E-03
83	GO:0051567: histone H3-K9 methylation	4.65E-03
84	GO:0044206: UMP salvage	4.65E-03
85	GO:0044205: 'de novo' UMP biosynthetic process	4.65E-03
86	GO:0009165: nucleotide biosynthetic process	4.65E-03
87	GO:1901141: regulation of lignin biosynthetic process	4.65E-03
88	GO:0048629: trichome patterning	4.65E-03
89	GO:0006418: tRNA aminoacylation for protein translation	5.17E-03
90	GO:0010438: cellular response to sulfur starvation	5.98E-03
91	GO:0010158: abaxial cell fate specification	5.98E-03
92	GO:0032876: negative regulation of DNA endoreduplication	5.98E-03
93	GO:0010375: stomatal complex patterning	5.98E-03
94	GO:0006544: glycine metabolic process	5.98E-03
95	GO:1902183: regulation of shoot apical meristem development	5.98E-03
96	GO:0016123: xanthophyll biosynthetic process	5.98E-03
97	GO:0006839: mitochondrial transport	6.38E-03
98	GO:0009959: negative gravitropism	7.42E-03
99	GO:0006655: phosphatidylglycerol biosynthetic process	7.42E-03
100	GO:0006139: nucleobase-containing compound metabolic process	7.42E-03
101	GO:0006559: L-phenylalanine catabolic process	7.42E-03
102	GO:0006206: pyrimidine nucleobase metabolic process	7.42E-03
103	GO:0018258: protein O-linked glycosylation via hydroxyproline	7.42E-03
104	GO:0009228: thiamine biosynthetic process	7.42E-03
105	GO:0016458: gene silencing	7.42E-03
106	GO:0006563: L-serine metabolic process	7.42E-03
107	GO:0010405: arabinogalactan protein metabolic process	7.42E-03
108	GO:0042546: cell wall biogenesis	7.87E-03
109	GO:0048653: anther development	8.71E-03
110	GO:0042372: phylloquinone biosynthetic process	8.97E-03
111	GO:2000033: regulation of seed dormancy process	8.97E-03
112	GO:0030488: tRNA methylation	8.97E-03
113	GO:0009088: threonine biosynthetic process	8.97E-03
114	GO:0080086: stamen filament development	8.97E-03
115	GO:0010050: vegetative phase change	1.06E-02
116	GO:0010444: guard mother cell differentiation	1.06E-02
117	GO:0030307: positive regulation of cell growth	1.06E-02
118	GO:0032880: regulation of protein localization	1.06E-02
119	GO:0010161: red light signaling pathway	1.06E-02
120	GO:0009610: response to symbiotic fungus	1.06E-02
121	GO:0009736: cytokinin-activated signaling pathway	1.10E-02
122	GO:0006402: mRNA catabolic process	1.24E-02
123	GO:0010439: regulation of glucosinolate biosynthetic process	1.24E-02
124	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.24E-02
125	GO:0009850: auxin metabolic process	1.24E-02
126	GO:0006353: DNA-templated transcription, termination	1.24E-02
127	GO:0009704: de-etiolation	1.24E-02
128	GO:0032875: regulation of DNA endoreduplication	1.24E-02
129	GO:0070413: trehalose metabolism in response to stress	1.24E-02
130	GO:0010252: auxin homeostasis	1.42E-02
131	GO:0010099: regulation of photomorphogenesis	1.43E-02
132	GO:0006002: fructose 6-phosphate metabolic process	1.43E-02
133	GO:0009827: plant-type cell wall modification	1.43E-02
134	GO:0016310: phosphorylation	1.43E-02
135	GO:0010052: guard cell differentiation	1.43E-02
136	GO:0010497: plasmodesmata-mediated intercellular transport	1.43E-02
137	GO:0010100: negative regulation of photomorphogenesis	1.43E-02
138	GO:0006526: arginine biosynthetic process	1.43E-02
139	GO:0032544: plastid translation	1.43E-02
140	GO:0007389: pattern specification process	1.43E-02
141	GO:0009740: gibberellic acid mediated signaling pathway	1.59E-02
142	GO:0051607: defense response to virus	1.60E-02
143	GO:2000024: regulation of leaf development	1.62E-02
144	GO:0006783: heme biosynthetic process	1.62E-02
145	GO:0000902: cell morphogenesis	1.62E-02
146	GO:0035999: tetrahydrofolate interconversion	1.83E-02
147	GO:0042761: very long-chain fatty acid biosynthetic process	1.83E-02
148	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	1.83E-02
149	GO:0071577: zinc II ion transmembrane transport	1.83E-02
150	GO:0010162: seed dormancy process	2.04E-02
151	GO:0009299: mRNA transcription	2.04E-02
152	GO:0006535: cysteine biosynthetic process from serine	2.04E-02
153	GO:0030422: production of siRNA involved in RNA interference	2.04E-02
154	GO:0048829: root cap development	2.04E-02
155	GO:0009641: shade avoidance	2.04E-02
156	GO:0010015: root morphogenesis	2.26E-02
157	GO:0006816: calcium ion transport	2.26E-02
158	GO:0009773: photosynthetic electron transport in photosystem I	2.26E-02
159	GO:0009682: induced systemic resistance	2.26E-02
160	GO:0006415: translational termination	2.26E-02
161	GO:0006357: regulation of transcription from RNA polymerase II promoter	2.34E-02
162	GO:0080167: response to karrikin	2.45E-02
163	GO:0015706: nitrate transport	2.49E-02
164	GO:0016024: CDP-diacylglycerol biosynthetic process	2.49E-02
165	GO:0010582: floral meristem determinacy	2.49E-02
166	GO:0009785: blue light signaling pathway	2.73E-02
167	GO:0010628: positive regulation of gene expression	2.73E-02
168	GO:0030036: actin cytoskeleton organization	2.73E-02
169	GO:0050826: response to freezing	2.73E-02
170	GO:0009725: response to hormone	2.73E-02
171	GO:0010207: photosystem II assembly	2.98E-02
172	GO:0006541: glutamine metabolic process	2.98E-02
173	GO:0010167: response to nitrate	3.23E-02
174	GO:0010030: positive regulation of seed germination	3.23E-02
175	GO:0070588: calcium ion transmembrane transport	3.23E-02
176	GO:0006631: fatty acid metabolic process	3.34E-02
177	GO:0006897: endocytosis	3.34E-02
178	GO:0007623: circadian rhythm	3.42E-02
179	GO:0009833: plant-type primary cell wall biogenesis	3.49E-02
180	GO:0006071: glycerol metabolic process	3.49E-02
181	GO:0019344: cysteine biosynthetic process	3.76E-02
182	GO:0009944: polarity specification of adaxial/abaxial axis	3.76E-02
183	GO:0007010: cytoskeleton organization	3.76E-02
184	GO:0051017: actin filament bundle assembly	3.76E-02
185	GO:0010187: negative regulation of seed germination	3.76E-02
186	GO:0009739: response to gibberellin	3.93E-02
187	GO:0006825: copper ion transport	4.03E-02
188	GO:0006855: drug transmembrane transport	4.22E-02
189	GO:0009751: response to salicylic acid	4.24E-02
190	GO:0006306: DNA methylation	4.31E-02
191	GO:0016998: cell wall macromolecule catabolic process	4.31E-02
192	GO:0006730: one-carbon metabolic process	4.60E-02
193	GO:0031348: negative regulation of defense response	4.60E-02
194	GO:0010082: regulation of root meristem growth	4.89E-02
195	GO:0009686: gibberellin biosynthetic process	4.89E-02
196	GO:0009625: response to insect	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0019136: deoxynucleoside kinase activity	0.00E+00
2	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
3	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
4	GO:0004056: argininosuccinate lyase activity	0.00E+00
5	GO:0004805: trehalose-phosphatase activity	1.70E-04
6	GO:0043621: protein self-association	3.10E-04
7	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.93E-04
8	GO:0050139: nicotinate-N-glucosyltransferase activity	6.66E-04
9	GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	6.66E-04
10	GO:0005290: L-histidine transmembrane transporter activity	6.66E-04
11	GO:0004008: copper-exporting ATPase activity	6.66E-04
12	GO:0004071: aspartate-ammonia ligase activity	6.66E-04
13	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	6.66E-04
14	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	6.66E-04
15	GO:0010313: phytochrome binding	6.66E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	6.66E-04
17	GO:0004830: tryptophan-tRNA ligase activity	6.66E-04
18	GO:0010285: L,L-diaminopimelate aminotransferase activity	6.66E-04
19	GO:0003727: single-stranded RNA binding	9.99E-04
20	GO:0004674: protein serine/threonine kinase activity	1.18E-03
21	GO:0004817: cysteine-tRNA ligase activity	1.44E-03
22	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.44E-03
23	GO:0000064: L-ornithine transmembrane transporter activity	1.44E-03
24	GO:0015929: hexosaminidase activity	1.44E-03
25	GO:0004563: beta-N-acetylhexosaminidase activity	1.44E-03
26	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.44E-03
27	GO:0050017: L-3-cyanoalanine synthase activity	1.44E-03
28	GO:0043425: bHLH transcription factor binding	1.44E-03
29	GO:0016301: kinase activity	1.61E-03
30	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.76E-03
31	GO:0000156: phosphorelay response regulator activity	2.08E-03
32	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.28E-03
33	GO:0070330: aromatase activity	2.37E-03
34	GO:0017150: tRNA dihydrouridine synthase activity	2.37E-03
35	GO:0045548: phenylalanine ammonia-lyase activity	2.37E-03
36	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	2.37E-03
37	GO:0070180: large ribosomal subunit rRNA binding	2.37E-03
38	GO:0015189: L-lysine transmembrane transporter activity	3.44E-03
39	GO:0004072: aspartate kinase activity	3.44E-03
40	GO:0015181: arginine transmembrane transporter activity	3.44E-03
41	GO:0017172: cysteine dioxygenase activity	3.44E-03
42	GO:0035197: siRNA binding	3.44E-03
43	GO:0001872: (1->3)-beta-D-glucan binding	3.44E-03
44	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.49E-03
45	GO:0004672: protein kinase activity	3.61E-03
46	GO:0080032: methyl jasmonate esterase activity	4.65E-03
47	GO:0019199: transmembrane receptor protein kinase activity	4.65E-03
48	GO:0046556: alpha-L-arabinofuranosidase activity	4.65E-03
49	GO:0004845: uracil phosphoribosyltransferase activity	4.65E-03
50	GO:0008409: 5'-3' exonuclease activity	4.65E-03
51	GO:0005524: ATP binding	4.88E-03
52	GO:0033612: receptor serine/threonine kinase binding	5.69E-03
53	GO:0004372: glycine hydroxymethyltransferase activity	5.98E-03
54	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.98E-03
55	GO:0018685: alkane 1-monooxygenase activity	5.98E-03
56	GO:0008725: DNA-3-methyladenine glycosylase activity	5.98E-03
57	GO:0016829: lyase activity	6.32E-03
58	GO:1990714: hydroxyproline O-galactosyltransferase activity	7.42E-03
59	GO:0016208: AMP binding	7.42E-03
60	GO:0008519: ammonium transmembrane transporter activity	7.42E-03
61	GO:0004605: phosphatidate cytidylyltransferase activity	7.42E-03
62	GO:0004812: aminoacyl-tRNA ligase activity	8.05E-03
63	GO:0008195: phosphatidate phosphatase activity	8.97E-03
64	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	8.97E-03
65	GO:0004849: uridine kinase activity	8.97E-03
66	GO:0003730: mRNA 3'-UTR binding	8.97E-03
67	GO:0004656: procollagen-proline 4-dioxygenase activity	8.97E-03
68	GO:0004124: cysteine synthase activity	8.97E-03
69	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.00E-02
70	GO:0003872: 6-phosphofructokinase activity	1.06E-02
71	GO:0019899: enzyme binding	1.06E-02
72	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.21E-02
73	GO:0016759: cellulose synthase activity	1.42E-02
74	GO:0005375: copper ion transmembrane transporter activity	1.43E-02
75	GO:0004650: polygalacturonase activity	1.53E-02
76	GO:0016597: amino acid binding	1.60E-02
77	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.62E-02
78	GO:0003747: translation release factor activity	1.62E-02
79	GO:0009672: auxin:proton symporter activity	1.83E-02
80	GO:0004713: protein tyrosine kinase activity	2.04E-02
81	GO:0044212: transcription regulatory region DNA binding	2.18E-02
82	GO:0008327: methyl-CpG binding	2.26E-02
83	GO:0015238: drug transmembrane transporter activity	2.33E-02
84	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.37E-02
85	GO:0004521: endoribonuclease activity	2.49E-02
86	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.49E-02
87	GO:0004252: serine-type endopeptidase activity	2.61E-02
88	GO:0030170: pyridoxal phosphate binding	2.61E-02
89	GO:0009982: pseudouridine synthase activity	2.73E-02
90	GO:0010329: auxin efflux transmembrane transporter activity	2.73E-02
91	GO:0004022: alcohol dehydrogenase (NAD) activity	2.73E-02
92	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.73E-02
93	GO:0004089: carbonate dehydratase activity	2.73E-02
94	GO:0031072: heat shock protein binding	2.73E-02
95	GO:0005262: calcium channel activity	2.73E-02
96	GO:0008083: growth factor activity	2.98E-02
97	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.98E-02
98	GO:0004871: signal transducer activity	3.42E-02
99	GO:0042803: protein homodimerization activity	3.42E-02
100	GO:0003887: DNA-directed DNA polymerase activity	3.49E-02
101	GO:0004185: serine-type carboxypeptidase activity	3.62E-02
102	GO:0005385: zinc ion transmembrane transporter activity	3.76E-02
103	GO:0031418: L-ascorbic acid binding	3.76E-02
104	GO:0005345: purine nucleobase transmembrane transporter activity	4.03E-02
105	GO:0008324: cation transmembrane transporter activity	4.03E-02
106	GO:0035251: UDP-glucosyltransferase activity	4.31E-02
107	GO:0004176: ATP-dependent peptidase activity	4.31E-02
108	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	4.60E-02
109	GO:0030570: pectate lyase activity	4.89E-02
110	GO:0016760: cellulose synthase (UDP-forming) activity	4.89E-02