GO Enrichment Analysis of Co-expressed Genes with
AT5G28640
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
2 | GO:0009606: tropism | 0.00E+00 |
3 | GO:0035884: arabinan biosynthetic process | 0.00E+00 |
4 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
5 | GO:1903224: regulation of endodermal cell differentiation | 0.00E+00 |
6 | GO:0045184: establishment of protein localization | 0.00E+00 |
7 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
8 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
9 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
10 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
11 | GO:0042793: transcription from plastid promoter | 2.33E-10 |
12 | GO:0009451: RNA modification | 2.96E-06 |
13 | GO:0009658: chloroplast organization | 1.33E-05 |
14 | GO:0010583: response to cyclopentenone | 1.13E-04 |
15 | GO:0009734: auxin-activated signaling pathway | 2.50E-04 |
16 | GO:0016998: cell wall macromolecule catabolic process | 3.67E-04 |
17 | GO:1901259: chloroplast rRNA processing | 3.68E-04 |
18 | GO:0009416: response to light stimulus | 4.55E-04 |
19 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 4.73E-04 |
20 | GO:0080112: seed growth | 4.73E-04 |
21 | GO:1905039: carboxylic acid transmembrane transport | 4.73E-04 |
22 | GO:1905200: gibberellic acid transmembrane transport | 4.73E-04 |
23 | GO:0090558: plant epidermis development | 4.73E-04 |
24 | GO:0043247: telomere maintenance in response to DNA damage | 4.73E-04 |
25 | GO:0033044: regulation of chromosome organization | 4.73E-04 |
26 | GO:1903866: palisade mesophyll development | 4.73E-04 |
27 | GO:0010063: positive regulation of trichoblast fate specification | 4.73E-04 |
28 | GO:0010480: microsporocyte differentiation | 4.73E-04 |
29 | GO:0090063: positive regulation of microtubule nucleation | 4.73E-04 |
30 | GO:0035987: endodermal cell differentiation | 4.73E-04 |
31 | GO:0006436: tryptophanyl-tRNA aminoacylation | 4.73E-04 |
32 | GO:0034757: negative regulation of iron ion transport | 4.73E-04 |
33 | GO:0032204: regulation of telomere maintenance | 4.73E-04 |
34 | GO:0042659: regulation of cell fate specification | 4.73E-04 |
35 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 4.73E-04 |
36 | GO:0048437: floral organ development | 4.74E-04 |
37 | GO:0000082: G1/S transition of mitotic cell cycle | 4.74E-04 |
38 | GO:0006955: immune response | 4.74E-04 |
39 | GO:0007389: pattern specification process | 7.21E-04 |
40 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 7.91E-04 |
41 | GO:1900865: chloroplast RNA modification | 1.01E-03 |
42 | GO:0048255: mRNA stabilization | 1.02E-03 |
43 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 1.02E-03 |
44 | GO:0010569: regulation of double-strand break repair via homologous recombination | 1.02E-03 |
45 | GO:0010434: bract formation | 1.02E-03 |
46 | GO:0010271: regulation of chlorophyll catabolic process | 1.02E-03 |
47 | GO:0018026: peptidyl-lysine monomethylation | 1.02E-03 |
48 | GO:0071497: cellular response to freezing | 1.02E-03 |
49 | GO:0048439: flower morphogenesis | 1.02E-03 |
50 | GO:0009662: etioplast organization | 1.02E-03 |
51 | GO:1904143: positive regulation of carotenoid biosynthetic process | 1.02E-03 |
52 | GO:0080009: mRNA methylation | 1.02E-03 |
53 | GO:2000123: positive regulation of stomatal complex development | 1.02E-03 |
54 | GO:0000086: G2/M transition of mitotic cell cycle | 1.02E-03 |
55 | GO:0010254: nectary development | 1.02E-03 |
56 | GO:0033566: gamma-tubulin complex localization | 1.02E-03 |
57 | GO:0006535: cysteine biosynthetic process from serine | 1.18E-03 |
58 | GO:0048229: gametophyte development | 1.36E-03 |
59 | GO:0080117: secondary growth | 1.66E-03 |
60 | GO:0090391: granum assembly | 1.66E-03 |
61 | GO:0006518: peptide metabolic process | 1.66E-03 |
62 | GO:0042780: tRNA 3'-end processing | 1.66E-03 |
63 | GO:0001578: microtubule bundle formation | 1.66E-03 |
64 | GO:0009954: proximal/distal pattern formation | 1.66E-03 |
65 | GO:0032504: multicellular organism reproduction | 1.66E-03 |
66 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 1.66E-03 |
67 | GO:0090708: specification of plant organ axis polarity | 1.66E-03 |
68 | GO:0010411: xyloglucan metabolic process | 1.79E-03 |
69 | GO:0009934: regulation of meristem structural organization | 2.00E-03 |
70 | GO:0048481: plant ovule development | 2.04E-03 |
71 | GO:0009800: cinnamic acid biosynthetic process | 2.41E-03 |
72 | GO:0010306: rhamnogalacturonan II biosynthetic process | 2.41E-03 |
73 | GO:0016572: histone phosphorylation | 2.41E-03 |
74 | GO:0046739: transport of virus in multicellular host | 2.41E-03 |
75 | GO:0007004: telomere maintenance via telomerase | 2.41E-03 |
76 | GO:0010371: regulation of gibberellin biosynthetic process | 2.41E-03 |
77 | GO:1902476: chloride transmembrane transport | 2.41E-03 |
78 | GO:0010071: root meristem specification | 2.41E-03 |
79 | GO:0010239: chloroplast mRNA processing | 2.41E-03 |
80 | GO:0019344: cysteine biosynthetic process | 2.78E-03 |
81 | GO:0030104: water homeostasis | 3.24E-03 |
82 | GO:0006221: pyrimidine nucleotide biosynthetic process | 3.24E-03 |
83 | GO:2000038: regulation of stomatal complex development | 3.24E-03 |
84 | GO:0006021: inositol biosynthetic process | 3.24E-03 |
85 | GO:0006346: methylation-dependent chromatin silencing | 3.24E-03 |
86 | GO:0009755: hormone-mediated signaling pathway | 3.24E-03 |
87 | GO:1901141: regulation of lignin biosynthetic process | 3.24E-03 |
88 | GO:0006479: protein methylation | 3.24E-03 |
89 | GO:1900864: mitochondrial RNA modification | 3.24E-03 |
90 | GO:0051322: anaphase | 3.24E-03 |
91 | GO:0042546: cell wall biogenesis | 4.02E-03 |
92 | GO:0006544: glycine metabolic process | 4.15E-03 |
93 | GO:0048497: maintenance of floral organ identity | 4.15E-03 |
94 | GO:0006282: regulation of DNA repair | 4.15E-03 |
95 | GO:0010375: stomatal complex patterning | 4.15E-03 |
96 | GO:0042127: regulation of cell proliferation | 4.38E-03 |
97 | GO:0016554: cytidine to uridine editing | 5.14E-03 |
98 | GO:0009913: epidermal cell differentiation | 5.14E-03 |
99 | GO:1902456: regulation of stomatal opening | 5.14E-03 |
100 | GO:0048831: regulation of shoot system development | 5.14E-03 |
101 | GO:0010315: auxin efflux | 5.14E-03 |
102 | GO:0006559: L-phenylalanine catabolic process | 5.14E-03 |
103 | GO:0009643: photosynthetic acclimation | 5.14E-03 |
104 | GO:0006563: L-serine metabolic process | 5.14E-03 |
105 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 5.14E-03 |
106 | GO:0010389: regulation of G2/M transition of mitotic cell cycle | 5.14E-03 |
107 | GO:0048868: pollen tube development | 5.54E-03 |
108 | GO:0009741: response to brassinosteroid | 5.54E-03 |
109 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.21E-03 |
110 | GO:0009942: longitudinal axis specification | 6.21E-03 |
111 | GO:0048509: regulation of meristem development | 6.21E-03 |
112 | GO:0010310: regulation of hydrogen peroxide metabolic process | 6.21E-03 |
113 | GO:2000067: regulation of root morphogenesis | 6.21E-03 |
114 | GO:0009851: auxin biosynthetic process | 6.40E-03 |
115 | GO:0080156: mitochondrial mRNA modification | 6.85E-03 |
116 | GO:0032502: developmental process | 7.32E-03 |
117 | GO:0006821: chloride transport | 7.34E-03 |
118 | GO:0010444: guard mother cell differentiation | 7.34E-03 |
119 | GO:0010103: stomatal complex morphogenesis | 7.34E-03 |
120 | GO:0010044: response to aluminum ion | 7.34E-03 |
121 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 7.34E-03 |
122 | GO:0010252: auxin homeostasis | 8.32E-03 |
123 | GO:0009828: plant-type cell wall loosening | 8.32E-03 |
124 | GO:0001522: pseudouridine synthesis | 8.55E-03 |
125 | GO:0009642: response to light intensity | 8.55E-03 |
126 | GO:0030162: regulation of proteolysis | 8.55E-03 |
127 | GO:0042255: ribosome assembly | 8.55E-03 |
128 | GO:0006353: DNA-templated transcription, termination | 8.55E-03 |
129 | GO:0048766: root hair initiation | 8.55E-03 |
130 | GO:0055075: potassium ion homeostasis | 8.55E-03 |
131 | GO:0000105: histidine biosynthetic process | 8.55E-03 |
132 | GO:0052543: callose deposition in cell wall | 8.55E-03 |
133 | GO:0019430: removal of superoxide radicals | 9.82E-03 |
134 | GO:0010497: plasmodesmata-mediated intercellular transport | 9.82E-03 |
135 | GO:0009657: plastid organization | 9.82E-03 |
136 | GO:0032544: plastid translation | 9.82E-03 |
137 | GO:0006303: double-strand break repair via nonhomologous end joining | 9.82E-03 |
138 | GO:0010027: thylakoid membrane organization | 9.94E-03 |
139 | GO:0010332: response to gamma radiation | 1.12E-02 |
140 | GO:0000373: Group II intron splicing | 1.12E-02 |
141 | GO:0048589: developmental growth | 1.12E-02 |
142 | GO:0000902: cell morphogenesis | 1.12E-02 |
143 | GO:0042761: very long-chain fatty acid biosynthetic process | 1.25E-02 |
144 | GO:2000280: regulation of root development | 1.25E-02 |
145 | GO:0006349: regulation of gene expression by genetic imprinting | 1.25E-02 |
146 | GO:0035999: tetrahydrofolate interconversion | 1.25E-02 |
147 | GO:0000160: phosphorelay signal transduction system | 1.37E-02 |
148 | GO:0009688: abscisic acid biosynthetic process | 1.40E-02 |
149 | GO:0048829: root cap development | 1.40E-02 |
150 | GO:0006949: syncytium formation | 1.40E-02 |
151 | GO:0010048: vernalization response | 1.40E-02 |
152 | GO:0009790: embryo development | 1.43E-02 |
153 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.55E-02 |
154 | GO:0015770: sucrose transport | 1.55E-02 |
155 | GO:0009750: response to fructose | 1.55E-02 |
156 | GO:0006865: amino acid transport | 1.58E-02 |
157 | GO:0040008: regulation of growth | 1.67E-02 |
158 | GO:0010152: pollen maturation | 1.71E-02 |
159 | GO:0045037: protein import into chloroplast stroma | 1.71E-02 |
160 | GO:0010582: floral meristem determinacy | 1.71E-02 |
161 | GO:0006790: sulfur compound metabolic process | 1.71E-02 |
162 | GO:0012501: programmed cell death | 1.71E-02 |
163 | GO:0009793: embryo development ending in seed dormancy | 1.77E-02 |
164 | GO:0010102: lateral root morphogenesis | 1.87E-02 |
165 | GO:0009691: cytokinin biosynthetic process | 1.87E-02 |
166 | GO:0010075: regulation of meristem growth | 1.87E-02 |
167 | GO:0010588: cotyledon vascular tissue pattern formation | 1.87E-02 |
168 | GO:0010020: chloroplast fission | 2.04E-02 |
169 | GO:0009739: response to gibberellin | 2.04E-02 |
170 | GO:0009926: auxin polar transport | 2.14E-02 |
171 | GO:0009744: response to sucrose | 2.14E-02 |
172 | GO:0080188: RNA-directed DNA methylation | 2.21E-02 |
173 | GO:0009901: anther dehiscence | 2.21E-02 |
174 | GO:0046854: phosphatidylinositol phosphorylation | 2.21E-02 |
175 | GO:0006071: glycerol metabolic process | 2.39E-02 |
176 | GO:0006833: water transport | 2.39E-02 |
177 | GO:0009733: response to auxin | 2.44E-02 |
178 | GO:0009944: polarity specification of adaxial/abaxial axis | 2.57E-02 |
179 | GO:0000027: ribosomal large subunit assembly | 2.57E-02 |
180 | GO:0009664: plant-type cell wall organization | 2.68E-02 |
181 | GO:0006418: tRNA aminoacylation for protein translation | 2.76E-02 |
182 | GO:0010073: meristem maintenance | 2.76E-02 |
183 | GO:0051302: regulation of cell division | 2.76E-02 |
184 | GO:0006364: rRNA processing | 2.88E-02 |
185 | GO:0009736: cytokinin-activated signaling pathway | 2.88E-02 |
186 | GO:0006306: DNA methylation | 2.95E-02 |
187 | GO:0003333: amino acid transmembrane transport | 2.95E-02 |
188 | GO:0010431: seed maturation | 2.95E-02 |
189 | GO:0016567: protein ubiquitination | 3.24E-02 |
190 | GO:0071215: cellular response to abscisic acid stimulus | 3.35E-02 |
191 | GO:0010082: regulation of root meristem growth | 3.35E-02 |
192 | GO:0010227: floral organ abscission | 3.35E-02 |
193 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 3.35E-02 |
194 | GO:0048316: seed development | 3.52E-02 |
195 | GO:0048443: stamen development | 3.56E-02 |
196 | GO:0006284: base-excision repair | 3.56E-02 |
197 | GO:0008284: positive regulation of cell proliferation | 3.77E-02 |
198 | GO:0070417: cellular response to cold | 3.77E-02 |
199 | GO:0009553: embryo sac development | 3.97E-02 |
200 | GO:0000226: microtubule cytoskeleton organization | 3.98E-02 |
201 | GO:0008033: tRNA processing | 3.98E-02 |
202 | GO:0010087: phloem or xylem histogenesis | 3.98E-02 |
203 | GO:0010118: stomatal movement | 3.98E-02 |
204 | GO:0048653: anther development | 3.98E-02 |
205 | GO:0009958: positive gravitropism | 4.20E-02 |
206 | GO:0010305: leaf vascular tissue pattern formation | 4.20E-02 |
207 | GO:0009960: endosperm development | 4.20E-02 |
208 | GO:0006396: RNA processing | 4.21E-02 |
209 | GO:0048544: recognition of pollen | 4.42E-02 |
210 | GO:0007018: microtubule-based movement | 4.42E-02 |
211 | GO:0006814: sodium ion transport | 4.42E-02 |
212 | GO:0009646: response to absence of light | 4.42E-02 |
213 | GO:0048825: cotyledon development | 4.65E-02 |
214 | GO:0009749: response to glucose | 4.65E-02 |
Rank | GO Term | Adjusted P value |
---|---|---|
1 | GO:0071633: dihydroceramidase activity | 0.00E+00 |
2 | GO:0004401: histidinol-phosphatase activity | 0.00E+00 |
3 | GO:0052834: inositol monophosphate phosphatase activity | 0.00E+00 |
4 | GO:0042834: peptidoglycan binding | 0.00E+00 |
5 | GO:0004519: endonuclease activity | 2.93E-06 |
6 | GO:0003723: RNA binding | 5.40E-06 |
7 | GO:0004124: cysteine synthase activity | 3.68E-04 |
8 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 4.73E-04 |
9 | GO:0016274: protein-arginine N-methyltransferase activity | 4.73E-04 |
10 | GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity | 4.73E-04 |
11 | GO:0052381: tRNA dimethylallyltransferase activity | 4.73E-04 |
12 | GO:0004830: tryptophan-tRNA ligase activity | 4.73E-04 |
13 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 4.73E-04 |
14 | GO:0004016: adenylate cyclase activity | 4.73E-04 |
15 | GO:1905201: gibberellin transmembrane transporter activity | 4.73E-04 |
16 | GO:0008836: diaminopimelate decarboxylase activity | 4.73E-04 |
17 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 4.73E-04 |
18 | GO:0019843: rRNA binding | 5.20E-04 |
19 | GO:0008173: RNA methyltransferase activity | 7.21E-04 |
20 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 9.14E-04 |
21 | GO:0009672: auxin:proton symporter activity | 1.01E-03 |
22 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.02E-03 |
23 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.02E-03 |
24 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 1.02E-03 |
25 | GO:0009884: cytokinin receptor activity | 1.02E-03 |
26 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.02E-03 |
27 | GO:0017150: tRNA dihydrouridine synthase activity | 1.66E-03 |
28 | GO:0045548: phenylalanine ammonia-lyase activity | 1.66E-03 |
29 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 1.66E-03 |
30 | GO:0016805: dipeptidase activity | 1.66E-03 |
31 | GO:0005034: osmosensor activity | 1.66E-03 |
32 | GO:0046524: sucrose-phosphate synthase activity | 1.66E-03 |
33 | GO:0010329: auxin efflux transmembrane transporter activity | 1.77E-03 |
34 | GO:0009982: pseudouridine synthase activity | 1.77E-03 |
35 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.79E-03 |
36 | GO:0009041: uridylate kinase activity | 2.41E-03 |
37 | GO:0008508: bile acid:sodium symporter activity | 2.41E-03 |
38 | GO:0001872: (1->3)-beta-D-glucan binding | 2.41E-03 |
39 | GO:0005215: transporter activity | 3.17E-03 |
40 | GO:0004031: aldehyde oxidase activity | 3.24E-03 |
41 | GO:0050302: indole-3-acetaldehyde oxidase activity | 3.24E-03 |
42 | GO:0005253: anion channel activity | 3.24E-03 |
43 | GO:0016279: protein-lysine N-methyltransferase activity | 3.24E-03 |
44 | GO:0010011: auxin binding | 3.24E-03 |
45 | GO:0030570: pectate lyase activity | 4.03E-03 |
46 | GO:0004372: glycine hydroxymethyltransferase activity | 4.15E-03 |
47 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 4.15E-03 |
48 | GO:0005275: amine transmembrane transporter activity | 4.15E-03 |
49 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 4.15E-03 |
50 | GO:0008725: DNA-3-methyladenine glycosylase activity | 4.15E-03 |
51 | GO:0003727: single-stranded RNA binding | 4.38E-03 |
52 | GO:0030332: cyclin binding | 5.14E-03 |
53 | GO:0004784: superoxide dismutase activity | 5.14E-03 |
54 | GO:0005247: voltage-gated chloride channel activity | 5.14E-03 |
55 | GO:0001085: RNA polymerase II transcription factor binding | 5.54E-03 |
56 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 6.21E-03 |
57 | GO:0019900: kinase binding | 6.21E-03 |
58 | GO:0008195: phosphatidate phosphatase activity | 6.21E-03 |
59 | GO:0003777: microtubule motor activity | 6.38E-03 |
60 | GO:0019901: protein kinase binding | 6.40E-03 |
61 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 8.58E-03 |
62 | GO:0008237: metallopeptidase activity | 8.84E-03 |
63 | GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity | 9.82E-03 |
64 | GO:0005515: protein binding | 1.09E-02 |
65 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 1.12E-02 |
66 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.38E-02 |
67 | GO:0004673: protein histidine kinase activity | 1.40E-02 |
68 | GO:0004222: metalloendopeptidase activity | 1.44E-02 |
69 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 1.51E-02 |
70 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 1.51E-02 |
71 | GO:0008515: sucrose transmembrane transporter activity | 1.55E-02 |
72 | GO:0008559: xenobiotic-transporting ATPase activity | 1.55E-02 |
73 | GO:0003697: single-stranded DNA binding | 1.65E-02 |
74 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.87E-02 |
75 | GO:0031072: heat shock protein binding | 1.87E-02 |
76 | GO:0000155: phosphorelay sensor kinase activity | 1.87E-02 |
77 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 2.04E-02 |
78 | GO:0051119: sugar transmembrane transporter activity | 2.21E-02 |
79 | GO:0004190: aspartic-type endopeptidase activity | 2.21E-02 |
80 | GO:0005345: purine nucleobase transmembrane transporter activity | 2.76E-02 |
81 | GO:0015079: potassium ion transmembrane transporter activity | 2.76E-02 |
82 | GO:0043424: protein histidine kinase binding | 2.76E-02 |
83 | GO:0008168: methyltransferase activity | 2.92E-02 |
84 | GO:0004176: ATP-dependent peptidase activity | 2.95E-02 |
85 | GO:0033612: receptor serine/threonine kinase binding | 2.95E-02 |
86 | GO:0008408: 3'-5' exonuclease activity | 2.95E-02 |
87 | GO:0016788: hydrolase activity, acting on ester bonds | 3.13E-02 |
88 | GO:0015171: amino acid transmembrane transporter activity | 3.19E-02 |
89 | GO:0003682: chromatin binding | 3.28E-02 |
90 | GO:0050660: flavin adenine dinucleotide binding | 3.67E-02 |
91 | GO:0018024: histone-lysine N-methyltransferase activity | 3.77E-02 |
92 | GO:0004812: aminoacyl-tRNA ligase activity | 3.77E-02 |
93 | GO:0004527: exonuclease activity | 4.20E-02 |
94 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 4.20E-02 |
95 | GO:0004674: protein serine/threonine kinase activity | 4.49E-02 |
96 | GO:0052689: carboxylic ester hydrolase activity | 4.51E-02 |