Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G28640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
2GO:0009606: tropism0.00E+00
3GO:0035884: arabinan biosynthetic process0.00E+00
4GO:0090322: regulation of superoxide metabolic process0.00E+00
5GO:1903224: regulation of endodermal cell differentiation0.00E+00
6GO:0045184: establishment of protein localization0.00E+00
7GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
8GO:0090615: mitochondrial mRNA processing0.00E+00
9GO:0042794: rRNA transcription from plastid promoter0.00E+00
10GO:0045014: negative regulation of transcription by glucose0.00E+00
11GO:0042793: transcription from plastid promoter2.33E-10
12GO:0009451: RNA modification2.96E-06
13GO:0009658: chloroplast organization1.33E-05
14GO:0010583: response to cyclopentenone1.13E-04
15GO:0009734: auxin-activated signaling pathway2.50E-04
16GO:0016998: cell wall macromolecule catabolic process3.67E-04
17GO:1901259: chloroplast rRNA processing3.68E-04
18GO:0009416: response to light stimulus4.55E-04
19GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic4.73E-04
20GO:0080112: seed growth4.73E-04
21GO:1905039: carboxylic acid transmembrane transport4.73E-04
22GO:1905200: gibberellic acid transmembrane transport4.73E-04
23GO:0090558: plant epidermis development4.73E-04
24GO:0043247: telomere maintenance in response to DNA damage4.73E-04
25GO:0033044: regulation of chromosome organization4.73E-04
26GO:1903866: palisade mesophyll development4.73E-04
27GO:0010063: positive regulation of trichoblast fate specification4.73E-04
28GO:0010480: microsporocyte differentiation4.73E-04
29GO:0090063: positive regulation of microtubule nucleation4.73E-04
30GO:0035987: endodermal cell differentiation4.73E-04
31GO:0006436: tryptophanyl-tRNA aminoacylation4.73E-04
32GO:0034757: negative regulation of iron ion transport4.73E-04
33GO:0032204: regulation of telomere maintenance4.73E-04
34GO:0042659: regulation of cell fate specification4.73E-04
35GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.73E-04
36GO:0048437: floral organ development4.74E-04
37GO:0000082: G1/S transition of mitotic cell cycle4.74E-04
38GO:0006955: immune response4.74E-04
39GO:0007389: pattern specification process7.21E-04
40GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway7.91E-04
41GO:1900865: chloroplast RNA modification1.01E-03
42GO:0048255: mRNA stabilization1.02E-03
43GO:1902326: positive regulation of chlorophyll biosynthetic process1.02E-03
44GO:0010569: regulation of double-strand break repair via homologous recombination1.02E-03
45GO:0010434: bract formation1.02E-03
46GO:0010271: regulation of chlorophyll catabolic process1.02E-03
47GO:0018026: peptidyl-lysine monomethylation1.02E-03
48GO:0071497: cellular response to freezing1.02E-03
49GO:0048439: flower morphogenesis1.02E-03
50GO:0009662: etioplast organization1.02E-03
51GO:1904143: positive regulation of carotenoid biosynthetic process1.02E-03
52GO:0080009: mRNA methylation1.02E-03
53GO:2000123: positive regulation of stomatal complex development1.02E-03
54GO:0000086: G2/M transition of mitotic cell cycle1.02E-03
55GO:0010254: nectary development1.02E-03
56GO:0033566: gamma-tubulin complex localization1.02E-03
57GO:0006535: cysteine biosynthetic process from serine1.18E-03
58GO:0048229: gametophyte development1.36E-03
59GO:0080117: secondary growth1.66E-03
60GO:0090391: granum assembly1.66E-03
61GO:0006518: peptide metabolic process1.66E-03
62GO:0042780: tRNA 3'-end processing1.66E-03
63GO:0001578: microtubule bundle formation1.66E-03
64GO:0009954: proximal/distal pattern formation1.66E-03
65GO:0032504: multicellular organism reproduction1.66E-03
66GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.66E-03
67GO:0090708: specification of plant organ axis polarity1.66E-03
68GO:0010411: xyloglucan metabolic process1.79E-03
69GO:0009934: regulation of meristem structural organization2.00E-03
70GO:0048481: plant ovule development2.04E-03
71GO:0009800: cinnamic acid biosynthetic process2.41E-03
72GO:0010306: rhamnogalacturonan II biosynthetic process2.41E-03
73GO:0016572: histone phosphorylation2.41E-03
74GO:0046739: transport of virus in multicellular host2.41E-03
75GO:0007004: telomere maintenance via telomerase2.41E-03
76GO:0010371: regulation of gibberellin biosynthetic process2.41E-03
77GO:1902476: chloride transmembrane transport2.41E-03
78GO:0010071: root meristem specification2.41E-03
79GO:0010239: chloroplast mRNA processing2.41E-03
80GO:0019344: cysteine biosynthetic process2.78E-03
81GO:0030104: water homeostasis3.24E-03
82GO:0006221: pyrimidine nucleotide biosynthetic process3.24E-03
83GO:2000038: regulation of stomatal complex development3.24E-03
84GO:0006021: inositol biosynthetic process3.24E-03
85GO:0006346: methylation-dependent chromatin silencing3.24E-03
86GO:0009755: hormone-mediated signaling pathway3.24E-03
87GO:1901141: regulation of lignin biosynthetic process3.24E-03
88GO:0006479: protein methylation3.24E-03
89GO:1900864: mitochondrial RNA modification3.24E-03
90GO:0051322: anaphase3.24E-03
91GO:0042546: cell wall biogenesis4.02E-03
92GO:0006544: glycine metabolic process4.15E-03
93GO:0048497: maintenance of floral organ identity4.15E-03
94GO:0006282: regulation of DNA repair4.15E-03
95GO:0010375: stomatal complex patterning4.15E-03
96GO:0042127: regulation of cell proliferation4.38E-03
97GO:0016554: cytidine to uridine editing5.14E-03
98GO:0009913: epidermal cell differentiation5.14E-03
99GO:1902456: regulation of stomatal opening5.14E-03
100GO:0048831: regulation of shoot system development5.14E-03
101GO:0010315: auxin efflux5.14E-03
102GO:0006559: L-phenylalanine catabolic process5.14E-03
103GO:0009643: photosynthetic acclimation5.14E-03
104GO:0006563: L-serine metabolic process5.14E-03
105GO:0010304: PSII associated light-harvesting complex II catabolic process5.14E-03
106GO:0010389: regulation of G2/M transition of mitotic cell cycle5.14E-03
107GO:0048868: pollen tube development5.54E-03
108GO:0009741: response to brassinosteroid5.54E-03
109GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.21E-03
110GO:0009942: longitudinal axis specification6.21E-03
111GO:0048509: regulation of meristem development6.21E-03
112GO:0010310: regulation of hydrogen peroxide metabolic process6.21E-03
113GO:2000067: regulation of root morphogenesis6.21E-03
114GO:0009851: auxin biosynthetic process6.40E-03
115GO:0080156: mitochondrial mRNA modification6.85E-03
116GO:0032502: developmental process7.32E-03
117GO:0006821: chloride transport7.34E-03
118GO:0010444: guard mother cell differentiation7.34E-03
119GO:0010103: stomatal complex morphogenesis7.34E-03
120GO:0010044: response to aluminum ion7.34E-03
121GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway7.34E-03
122GO:0010252: auxin homeostasis8.32E-03
123GO:0009828: plant-type cell wall loosening8.32E-03
124GO:0001522: pseudouridine synthesis8.55E-03
125GO:0009642: response to light intensity8.55E-03
126GO:0030162: regulation of proteolysis8.55E-03
127GO:0042255: ribosome assembly8.55E-03
128GO:0006353: DNA-templated transcription, termination8.55E-03
129GO:0048766: root hair initiation8.55E-03
130GO:0055075: potassium ion homeostasis8.55E-03
131GO:0000105: histidine biosynthetic process8.55E-03
132GO:0052543: callose deposition in cell wall8.55E-03
133GO:0019430: removal of superoxide radicals9.82E-03
134GO:0010497: plasmodesmata-mediated intercellular transport9.82E-03
135GO:0009657: plastid organization9.82E-03
136GO:0032544: plastid translation9.82E-03
137GO:0006303: double-strand break repair via nonhomologous end joining9.82E-03
138GO:0010027: thylakoid membrane organization9.94E-03
139GO:0010332: response to gamma radiation1.12E-02
140GO:0000373: Group II intron splicing1.12E-02
141GO:0048589: developmental growth1.12E-02
142GO:0000902: cell morphogenesis1.12E-02
143GO:0042761: very long-chain fatty acid biosynthetic process1.25E-02
144GO:2000280: regulation of root development1.25E-02
145GO:0006349: regulation of gene expression by genetic imprinting1.25E-02
146GO:0035999: tetrahydrofolate interconversion1.25E-02
147GO:0000160: phosphorelay signal transduction system1.37E-02
148GO:0009688: abscisic acid biosynthetic process1.40E-02
149GO:0048829: root cap development1.40E-02
150GO:0006949: syncytium formation1.40E-02
151GO:0010048: vernalization response1.40E-02
152GO:0009790: embryo development1.43E-02
153GO:0009089: lysine biosynthetic process via diaminopimelate1.55E-02
154GO:0015770: sucrose transport1.55E-02
155GO:0009750: response to fructose1.55E-02
156GO:0006865: amino acid transport1.58E-02
157GO:0040008: regulation of growth1.67E-02
158GO:0010152: pollen maturation1.71E-02
159GO:0045037: protein import into chloroplast stroma1.71E-02
160GO:0010582: floral meristem determinacy1.71E-02
161GO:0006790: sulfur compound metabolic process1.71E-02
162GO:0012501: programmed cell death1.71E-02
163GO:0009793: embryo development ending in seed dormancy1.77E-02
164GO:0010102: lateral root morphogenesis1.87E-02
165GO:0009691: cytokinin biosynthetic process1.87E-02
166GO:0010075: regulation of meristem growth1.87E-02
167GO:0010588: cotyledon vascular tissue pattern formation1.87E-02
168GO:0010020: chloroplast fission2.04E-02
169GO:0009739: response to gibberellin2.04E-02
170GO:0009926: auxin polar transport2.14E-02
171GO:0009744: response to sucrose2.14E-02
172GO:0080188: RNA-directed DNA methylation2.21E-02
173GO:0009901: anther dehiscence2.21E-02
174GO:0046854: phosphatidylinositol phosphorylation2.21E-02
175GO:0006071: glycerol metabolic process2.39E-02
176GO:0006833: water transport2.39E-02
177GO:0009733: response to auxin2.44E-02
178GO:0009944: polarity specification of adaxial/abaxial axis2.57E-02
179GO:0000027: ribosomal large subunit assembly2.57E-02
180GO:0009664: plant-type cell wall organization2.68E-02
181GO:0006418: tRNA aminoacylation for protein translation2.76E-02
182GO:0010073: meristem maintenance2.76E-02
183GO:0051302: regulation of cell division2.76E-02
184GO:0006364: rRNA processing2.88E-02
185GO:0009736: cytokinin-activated signaling pathway2.88E-02
186GO:0006306: DNA methylation2.95E-02
187GO:0003333: amino acid transmembrane transport2.95E-02
188GO:0010431: seed maturation2.95E-02
189GO:0016567: protein ubiquitination3.24E-02
190GO:0071215: cellular response to abscisic acid stimulus3.35E-02
191GO:0010082: regulation of root meristem growth3.35E-02
192GO:0010227: floral organ abscission3.35E-02
193GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.35E-02
194GO:0048316: seed development3.52E-02
195GO:0048443: stamen development3.56E-02
196GO:0006284: base-excision repair3.56E-02
197GO:0008284: positive regulation of cell proliferation3.77E-02
198GO:0070417: cellular response to cold3.77E-02
199GO:0009553: embryo sac development3.97E-02
200GO:0000226: microtubule cytoskeleton organization3.98E-02
201GO:0008033: tRNA processing3.98E-02
202GO:0010087: phloem or xylem histogenesis3.98E-02
203GO:0010118: stomatal movement3.98E-02
204GO:0048653: anther development3.98E-02
205GO:0009958: positive gravitropism4.20E-02
206GO:0010305: leaf vascular tissue pattern formation4.20E-02
207GO:0009960: endosperm development4.20E-02
208GO:0006396: RNA processing4.21E-02
209GO:0048544: recognition of pollen4.42E-02
210GO:0007018: microtubule-based movement4.42E-02
211GO:0006814: sodium ion transport4.42E-02
212GO:0009646: response to absence of light4.42E-02
213GO:0048825: cotyledon development4.65E-02
214GO:0009749: response to glucose4.65E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0004401: histidinol-phosphatase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0042834: peptidoglycan binding0.00E+00
5GO:0004519: endonuclease activity2.93E-06
6GO:0003723: RNA binding5.40E-06
7GO:0004124: cysteine synthase activity3.68E-04
8GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.73E-04
9GO:0016274: protein-arginine N-methyltransferase activity4.73E-04
10GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.73E-04
11GO:0052381: tRNA dimethylallyltransferase activity4.73E-04
12GO:0004830: tryptophan-tRNA ligase activity4.73E-04
13GO:0010347: L-galactose-1-phosphate phosphatase activity4.73E-04
14GO:0004016: adenylate cyclase activity4.73E-04
15GO:1905201: gibberellin transmembrane transporter activity4.73E-04
16GO:0008836: diaminopimelate decarboxylase activity4.73E-04
17GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.73E-04
18GO:0019843: rRNA binding5.20E-04
19GO:0008173: RNA methyltransferase activity7.21E-04
20GO:0016762: xyloglucan:xyloglucosyl transferase activity9.14E-04
21GO:0009672: auxin:proton symporter activity1.01E-03
22GO:0008934: inositol monophosphate 1-phosphatase activity1.02E-03
23GO:0052833: inositol monophosphate 4-phosphatase activity1.02E-03
24GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.02E-03
25GO:0009884: cytokinin receptor activity1.02E-03
26GO:0052832: inositol monophosphate 3-phosphatase activity1.02E-03
27GO:0017150: tRNA dihydrouridine synthase activity1.66E-03
28GO:0045548: phenylalanine ammonia-lyase activity1.66E-03
29GO:0042781: 3'-tRNA processing endoribonuclease activity1.66E-03
30GO:0016805: dipeptidase activity1.66E-03
31GO:0005034: osmosensor activity1.66E-03
32GO:0046524: sucrose-phosphate synthase activity1.66E-03
33GO:0010329: auxin efflux transmembrane transporter activity1.77E-03
34GO:0009982: pseudouridine synthase activity1.77E-03
35GO:0016798: hydrolase activity, acting on glycosyl bonds1.79E-03
36GO:0009041: uridylate kinase activity2.41E-03
37GO:0008508: bile acid:sodium symporter activity2.41E-03
38GO:0001872: (1->3)-beta-D-glucan binding2.41E-03
39GO:0005215: transporter activity3.17E-03
40GO:0004031: aldehyde oxidase activity3.24E-03
41GO:0050302: indole-3-acetaldehyde oxidase activity3.24E-03
42GO:0005253: anion channel activity3.24E-03
43GO:0016279: protein-lysine N-methyltransferase activity3.24E-03
44GO:0010011: auxin binding3.24E-03
45GO:0030570: pectate lyase activity4.03E-03
46GO:0004372: glycine hydroxymethyltransferase activity4.15E-03
47GO:0016773: phosphotransferase activity, alcohol group as acceptor4.15E-03
48GO:0005275: amine transmembrane transporter activity4.15E-03
49GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.15E-03
50GO:0008725: DNA-3-methyladenine glycosylase activity4.15E-03
51GO:0003727: single-stranded RNA binding4.38E-03
52GO:0030332: cyclin binding5.14E-03
53GO:0004784: superoxide dismutase activity5.14E-03
54GO:0005247: voltage-gated chloride channel activity5.14E-03
55GO:0001085: RNA polymerase II transcription factor binding5.54E-03
56GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.21E-03
57GO:0019900: kinase binding6.21E-03
58GO:0008195: phosphatidate phosphatase activity6.21E-03
59GO:0003777: microtubule motor activity6.38E-03
60GO:0019901: protein kinase binding6.40E-03
61GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds8.58E-03
62GO:0008237: metallopeptidase activity8.84E-03
63GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity9.82E-03
64GO:0005515: protein binding1.09E-02
65GO:0008889: glycerophosphodiester phosphodiesterase activity1.12E-02
66GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.38E-02
67GO:0004673: protein histidine kinase activity1.40E-02
68GO:0004222: metalloendopeptidase activity1.44E-02
69GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.51E-02
70GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.51E-02
71GO:0008515: sucrose transmembrane transporter activity1.55E-02
72GO:0008559: xenobiotic-transporting ATPase activity1.55E-02
73GO:0003697: single-stranded DNA binding1.65E-02
74GO:0004022: alcohol dehydrogenase (NAD) activity1.87E-02
75GO:0031072: heat shock protein binding1.87E-02
76GO:0000155: phosphorelay sensor kinase activity1.87E-02
77GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.04E-02
78GO:0051119: sugar transmembrane transporter activity2.21E-02
79GO:0004190: aspartic-type endopeptidase activity2.21E-02
80GO:0005345: purine nucleobase transmembrane transporter activity2.76E-02
81GO:0015079: potassium ion transmembrane transporter activity2.76E-02
82GO:0043424: protein histidine kinase binding2.76E-02
83GO:0008168: methyltransferase activity2.92E-02
84GO:0004176: ATP-dependent peptidase activity2.95E-02
85GO:0033612: receptor serine/threonine kinase binding2.95E-02
86GO:0008408: 3'-5' exonuclease activity2.95E-02
87GO:0016788: hydrolase activity, acting on ester bonds3.13E-02
88GO:0015171: amino acid transmembrane transporter activity3.19E-02
89GO:0003682: chromatin binding3.28E-02
90GO:0050660: flavin adenine dinucleotide binding3.67E-02
91GO:0018024: histone-lysine N-methyltransferase activity3.77E-02
92GO:0004812: aminoacyl-tRNA ligase activity3.77E-02
93GO:0004527: exonuclease activity4.20E-02
94GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity4.20E-02
95GO:0004674: protein serine/threonine kinase activity4.49E-02
96GO:0052689: carboxylic ester hydrolase activity4.51E-02
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Gene type



Gene DE type