Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G28030

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045184: establishment of protein localization0.00E+00
2GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
3GO:0006399: tRNA metabolic process0.00E+00
4GO:0031222: arabinan catabolic process0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
7GO:0090071: negative regulation of ribosome biogenesis0.00E+00
8GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process0.00E+00
9GO:0009606: tropism0.00E+00
10GO:1903224: regulation of endodermal cell differentiation0.00E+00
11GO:0035884: arabinan biosynthetic process0.00E+00
12GO:0042793: transcription from plastid promoter1.04E-09
13GO:0009451: RNA modification2.15E-07
14GO:0046620: regulation of organ growth1.30E-06
15GO:0009657: plastid organization2.16E-06
16GO:0009734: auxin-activated signaling pathway2.33E-06
17GO:0009658: chloroplast organization1.21E-05
18GO:0042026: protein refolding2.53E-05
19GO:0006518: peptide metabolic process6.35E-05
20GO:0016556: mRNA modification1.32E-04
21GO:0010306: rhamnogalacturonan II biosynthetic process1.32E-04
22GO:0051322: anaphase2.25E-04
23GO:0009733: response to auxin2.36E-04
24GO:0009926: auxin polar transport2.73E-04
25GO:1901259: chloroplast rRNA processing6.24E-04
26GO:0006458: 'de novo' protein folding6.24E-04
27GO:0010063: positive regulation of trichoblast fate specification6.72E-04
28GO:0043247: telomere maintenance in response to DNA damage6.72E-04
29GO:0033044: regulation of chromosome organization6.72E-04
30GO:0010480: microsporocyte differentiation6.72E-04
31GO:0042371: vitamin K biosynthetic process6.72E-04
32GO:0035987: endodermal cell differentiation6.72E-04
33GO:0006436: tryptophanyl-tRNA aminoacylation6.72E-04
34GO:0010729: positive regulation of hydrogen peroxide biosynthetic process6.72E-04
35GO:0006419: alanyl-tRNA aminoacylation6.72E-04
36GO:0032204: regulation of telomere maintenance6.72E-04
37GO:0042659: regulation of cell fate specification6.72E-04
38GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process6.72E-04
39GO:0070509: calcium ion import6.72E-04
40GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.72E-04
41GO:0030198: extracellular matrix organization6.72E-04
42GO:0090558: plant epidermis development6.72E-04
43GO:0048528: post-embryonic root development7.97E-04
44GO:0048437: floral organ development7.97E-04
45GO:0009793: embryo development ending in seed dormancy1.02E-03
46GO:0007389: pattern specification process1.20E-03
47GO:0048868: pollen tube development1.36E-03
48GO:0000373: Group II intron splicing1.44E-03
49GO:0071497: cellular response to freezing1.45E-03
50GO:0009662: etioplast organization1.45E-03
51GO:0042325: regulation of phosphorylation1.45E-03
52GO:0009220: pyrimidine ribonucleotide biosynthetic process1.45E-03
53GO:1904143: positive regulation of carotenoid biosynthetic process1.45E-03
54GO:0080009: mRNA methylation1.45E-03
55GO:0001682: tRNA 5'-leader removal1.45E-03
56GO:2000123: positive regulation of stomatal complex development1.45E-03
57GO:0006420: arginyl-tRNA aminoacylation1.45E-03
58GO:0060359: response to ammonium ion1.45E-03
59GO:0048255: mRNA stabilization1.45E-03
60GO:1902326: positive regulation of chlorophyll biosynthetic process1.45E-03
61GO:0018026: peptidyl-lysine monomethylation1.45E-03
62GO:1900865: chloroplast RNA modification1.71E-03
63GO:0009790: embryo development1.76E-03
64GO:0009630: gravitropism1.95E-03
65GO:0010583: response to cyclopentenone1.95E-03
66GO:0045036: protein targeting to chloroplast2.00E-03
67GO:0040008: regulation of growth2.19E-03
68GO:0009828: plant-type cell wall loosening2.29E-03
69GO:0010252: auxin homeostasis2.29E-03
70GO:0010015: root morphogenesis2.31E-03
71GO:0042780: tRNA 3'-end processing2.39E-03
72GO:0001578: microtubule bundle formation2.39E-03
73GO:0043157: response to cation stress2.39E-03
74GO:0005977: glycogen metabolic process2.39E-03
75GO:0032504: multicellular organism reproduction2.39E-03
76GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.39E-03
77GO:0045910: negative regulation of DNA recombination2.39E-03
78GO:0090708: specification of plant organ axis polarity2.39E-03
79GO:0006954: inflammatory response2.39E-03
80GO:0006508: proteolysis2.58E-03
81GO:0045037: protein import into chloroplast stroma2.65E-03
82GO:2000012: regulation of auxin polar transport3.02E-03
83GO:0010207: photosystem II assembly3.41E-03
84GO:0051289: protein homotetramerization3.48E-03
85GO:2001141: regulation of RNA biosynthetic process3.48E-03
86GO:0007004: telomere maintenance via telomerase3.48E-03
87GO:1902476: chloride transmembrane transport3.48E-03
88GO:0010071: root meristem specification3.48E-03
89GO:0051513: regulation of monopolar cell growth3.48E-03
90GO:0051085: chaperone mediated protein folding requiring cofactor3.48E-03
91GO:0010239: chloroplast mRNA processing3.48E-03
92GO:0046739: transport of virus in multicellular host3.48E-03
93GO:0044205: 'de novo' UMP biosynthetic process4.69E-03
94GO:0010021: amylopectin biosynthetic process4.69E-03
95GO:1901141: regulation of lignin biosynthetic process4.69E-03
96GO:0006479: protein methylation4.69E-03
97GO:0042274: ribosomal small subunit biogenesis4.69E-03
98GO:0030104: water homeostasis4.69E-03
99GO:2000038: regulation of stomatal complex development4.69E-03
100GO:0006221: pyrimidine nucleotide biosynthetic process4.69E-03
101GO:0006021: inositol biosynthetic process4.69E-03
102GO:0016998: cell wall macromolecule catabolic process5.77E-03
103GO:0061077: chaperone-mediated protein folding5.77E-03
104GO:0010236: plastoquinone biosynthetic process6.03E-03
105GO:0048497: maintenance of floral organ identity6.03E-03
106GO:0006282: regulation of DNA repair6.03E-03
107GO:0009107: lipoate biosynthetic process6.03E-03
108GO:0010158: abaxial cell fate specification6.03E-03
109GO:0010375: stomatal complex patterning6.03E-03
110GO:0007005: mitochondrion organization6.33E-03
111GO:0009831: plant-type cell wall modification involved in multidimensional cell growth6.91E-03
112GO:0010082: regulation of root meristem growth6.91E-03
113GO:0018258: protein O-linked glycosylation via hydroxyproline7.49E-03
114GO:0050665: hydrogen peroxide biosynthetic process7.49E-03
115GO:0010405: arabinogalactan protein metabolic process7.49E-03
116GO:0009959: negative gravitropism7.49E-03
117GO:0009913: epidermal cell differentiation7.49E-03
118GO:0006655: phosphatidylglycerol biosynthetic process7.49E-03
119GO:1902456: regulation of stomatal opening7.49E-03
120GO:0016554: cytidine to uridine editing7.49E-03
121GO:0010315: auxin efflux7.49E-03
122GO:0010114: response to red light7.61E-03
123GO:0008033: tRNA processing8.83E-03
124GO:0000226: microtubule cytoskeleton organization8.83E-03
125GO:0030488: tRNA methylation9.06E-03
126GO:0009854: oxidative photosynthetic carbon pathway9.06E-03
127GO:2000067: regulation of root morphogenesis9.06E-03
128GO:0009955: adaxial/abaxial pattern specification9.06E-03
129GO:0042372: phylloquinone biosynthetic process9.06E-03
130GO:0017148: negative regulation of translation9.06E-03
131GO:0009942: longitudinal axis specification9.06E-03
132GO:0009741: response to brassinosteroid9.53E-03
133GO:0009664: plant-type cell wall organization1.02E-02
134GO:0006400: tRNA modification1.07E-02
135GO:0030307: positive regulation of cell growth1.07E-02
136GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process1.07E-02
137GO:0010044: response to aluminum ion1.07E-02
138GO:0006955: immune response1.07E-02
139GO:0007050: cell cycle arrest1.07E-02
140GO:0009772: photosynthetic electron transport in photosystem II1.07E-02
141GO:0006821: chloride transport1.07E-02
142GO:0010050: vegetative phase change1.07E-02
143GO:0010444: guard mother cell differentiation1.07E-02
144GO:0006353: DNA-templated transcription, termination1.25E-02
145GO:0048766: root hair initiation1.25E-02
146GO:0070413: trehalose metabolism in response to stress1.25E-02
147GO:0055075: potassium ion homeostasis1.25E-02
148GO:0000105: histidine biosynthetic process1.25E-02
149GO:0048564: photosystem I assembly1.25E-02
150GO:0001522: pseudouridine synthesis1.25E-02
151GO:0009850: auxin metabolic process1.25E-02
152GO:0009416: response to light stimulus1.43E-02
153GO:0010497: plasmodesmata-mediated intercellular transport1.44E-02
154GO:0006526: arginine biosynthetic process1.44E-02
155GO:0010204: defense response signaling pathway, resistance gene-independent1.44E-02
156GO:0006303: double-strand break repair via nonhomologous end joining1.44E-02
157GO:0071482: cellular response to light stimulus1.44E-02
158GO:0019430: removal of superoxide radicals1.44E-02
159GO:0000910: cytokinesis1.62E-02
160GO:0000902: cell morphogenesis1.64E-02
161GO:0006098: pentose-phosphate shunt1.64E-02
162GO:0010332: response to gamma radiation1.64E-02
163GO:0009826: unidimensional cell growth1.71E-02
164GO:0010027: thylakoid membrane organization1.72E-02
165GO:0001666: response to hypoxia1.72E-02
166GO:0031425: chloroplast RNA processing1.85E-02
167GO:0009638: phototropism1.85E-02
168GO:0042761: very long-chain fatty acid biosynthetic process1.85E-02
169GO:2000280: regulation of root development1.85E-02
170GO:0009742: brassinosteroid mediated signaling pathway1.89E-02
171GO:0010411: xyloglucan metabolic process2.03E-02
172GO:0006298: mismatch repair2.06E-02
173GO:0006949: syncytium formation2.06E-02
174GO:0006259: DNA metabolic process2.06E-02
175GO:0048481: plant ovule development2.25E-02
176GO:0006352: DNA-templated transcription, initiation2.29E-02
177GO:0048229: gametophyte development2.29E-02
178GO:0006265: DNA topological change2.29E-02
179GO:0009073: aromatic amino acid family biosynthetic process2.29E-02
180GO:0006457: protein folding2.34E-02
181GO:0080167: response to karrikin2.50E-02
182GO:0016024: CDP-diacylglycerol biosynthetic process2.52E-02
183GO:0010582: floral meristem determinacy2.52E-02
184GO:0006790: sulfur compound metabolic process2.52E-02
185GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.63E-02
186GO:0010102: lateral root morphogenesis2.76E-02
187GO:0009785: blue light signaling pathway2.76E-02
188GO:0009691: cytokinin biosynthetic process2.76E-02
189GO:0050826: response to freezing2.76E-02
190GO:0010075: regulation of meristem growth2.76E-02
191GO:0006094: gluconeogenesis2.76E-02
192GO:0009934: regulation of meristem structural organization3.01E-02
193GO:0010020: chloroplast fission3.01E-02
194GO:0070588: calcium ion transmembrane transport3.26E-02
195GO:0046854: phosphatidylinositol phosphorylation3.26E-02
196GO:0006833: water transport3.53E-02
197GO:0008283: cell proliferation3.67E-02
198GO:0005992: trehalose biosynthetic process3.79E-02
199GO:0009116: nucleoside metabolic process3.79E-02
200GO:0000027: ribosomal large subunit assembly3.79E-02
201GO:0042546: cell wall biogenesis3.82E-02
202GO:0010073: meristem maintenance4.07E-02
203GO:0051302: regulation of cell division4.07E-02
204GO:0019953: sexual reproduction4.07E-02
205GO:0006418: tRNA aminoacylation for protein translation4.07E-02
206GO:0007275: multicellular organism development4.10E-02
207GO:0006855: drug transmembrane transport4.28E-02
208GO:0015992: proton transport4.35E-02
209GO:0006730: one-carbon metabolic process4.64E-02
210GO:0031348: negative regulation of defense response4.64E-02
211GO:0019748: secondary metabolic process4.64E-02
212GO:0016226: iron-sulfur cluster assembly4.64E-02
RankGO TermAdjusted P value
1GO:0004401: histidinol-phosphatase activity0.00E+00
2GO:0004056: argininosuccinate lyase activity0.00E+00
3GO:0004358: glutamate N-acetyltransferase activity0.00E+00
4GO:0016018: cyclosporin A binding0.00E+00
5GO:0070009: serine-type aminopeptidase activity0.00E+00
6GO:0052834: inositol monophosphate phosphatase activity0.00E+00
7GO:0005201: extracellular matrix structural constituent0.00E+00
8GO:0071633: dihydroceramidase activity0.00E+00
9GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity0.00E+00
10GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
11GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
12GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
13GO:0004519: endonuclease activity7.93E-09
14GO:0003723: RNA binding1.90E-07
15GO:0008237: metallopeptidase activity4.18E-05
16GO:0004176: ATP-dependent peptidase activity7.00E-05
17GO:0004222: metalloendopeptidase activity1.23E-04
18GO:0001872: (1->3)-beta-D-glucan binding1.32E-04
19GO:0044183: protein binding involved in protein folding2.14E-04
20GO:0016773: phosphotransferase activity, alcohol group as acceptor3.38E-04
21GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.72E-04
22GO:0052381: tRNA dimethylallyltransferase activity6.72E-04
23GO:0004830: tryptophan-tRNA ligase activity6.72E-04
24GO:0010347: L-galactose-1-phosphate phosphatase activity6.72E-04
25GO:0005227: calcium activated cation channel activity6.72E-04
26GO:0042834: peptidoglycan binding6.72E-04
27GO:0016274: protein-arginine N-methyltransferase activity6.72E-04
28GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.72E-04
29GO:0004813: alanine-tRNA ligase activity6.72E-04
30GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.72E-04
31GO:0008173: RNA methyltransferase activity1.20E-03
32GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.45E-03
33GO:0017118: lipoyltransferase activity1.45E-03
34GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.45E-03
35GO:0004814: arginine-tRNA ligase activity1.45E-03
36GO:0016415: octanoyltransferase activity1.45E-03
37GO:0004047: aminomethyltransferase activity1.45E-03
38GO:0052832: inositol monophosphate 3-phosphatase activity1.45E-03
39GO:0000774: adenyl-nucleotide exchange factor activity1.45E-03
40GO:0019156: isoamylase activity1.45E-03
41GO:0008805: carbon-monoxide oxygenase activity1.45E-03
42GO:0008934: inositol monophosphate 1-phosphatase activity1.45E-03
43GO:0052833: inositol monophosphate 4-phosphatase activity1.45E-03
44GO:0009672: auxin:proton symporter activity1.71E-03
45GO:0016805: dipeptidase activity2.39E-03
46GO:0046524: sucrose-phosphate synthase activity2.39E-03
47GO:0017150: tRNA dihydrouridine synthase activity2.39E-03
48GO:0042781: 3'-tRNA processing endoribonuclease activity2.39E-03
49GO:0010329: auxin efflux transmembrane transporter activity3.02E-03
50GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity3.48E-03
51GO:0043023: ribosomal large subunit binding3.48E-03
52GO:0008508: bile acid:sodium symporter activity3.48E-03
53GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity3.48E-03
54GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity3.48E-03
55GO:0009678: hydrogen-translocating pyrophosphatase activity3.48E-03
56GO:0009041: uridylate kinase activity3.48E-03
57GO:0051082: unfolded protein binding4.05E-03
58GO:0008891: glycolate oxidase activity4.69E-03
59GO:0004930: G-protein coupled receptor activity4.69E-03
60GO:0046556: alpha-L-arabinofuranosidase activity4.69E-03
61GO:0004659: prenyltransferase activity4.69E-03
62GO:0016279: protein-lysine N-methyltransferase activity4.69E-03
63GO:0001053: plastid sigma factor activity4.69E-03
64GO:0016987: sigma factor activity4.69E-03
65GO:0005253: anion channel activity4.69E-03
66GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors5.49E-03
67GO:0019843: rRNA binding5.73E-03
68GO:0070696: transmembrane receptor protein serine/threonine kinase binding6.03E-03
69GO:0004888: transmembrane signaling receptor activity6.03E-03
70GO:0005275: amine transmembrane transporter activity6.03E-03
71GO:0004784: superoxide dismutase activity7.49E-03
72GO:0005247: voltage-gated chloride channel activity7.49E-03
73GO:0030983: mismatched DNA binding7.49E-03
74GO:0004605: phosphatidate cytidylyltransferase activity7.49E-03
75GO:0080030: methyl indole-3-acetate esterase activity7.49E-03
76GO:1990714: hydroxyproline O-galactosyltransferase activity7.49E-03
77GO:0004332: fructose-bisphosphate aldolase activity7.49E-03
78GO:0004526: ribonuclease P activity7.49E-03
79GO:0004556: alpha-amylase activity7.49E-03
80GO:0004656: procollagen-proline 4-dioxygenase activity9.06E-03
81GO:0008195: phosphatidate phosphatase activity9.06E-03
82GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity9.06E-03
83GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds9.11E-03
84GO:0004427: inorganic diphosphatase activity1.07E-02
85GO:0016887: ATPase activity1.10E-02
86GO:0016762: xyloglucan:xyloglucosyl transferase activity1.18E-02
87GO:0043022: ribosome binding1.25E-02
88GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.44E-02
89GO:0016597: amino acid binding1.62E-02
90GO:0030247: polysaccharide binding2.03E-02
91GO:0016798: hydrolase activity, acting on glycosyl bonds2.03E-02
92GO:0004805: trehalose-phosphatase activity2.06E-02
93GO:0015238: drug transmembrane transporter activity2.36E-02
94GO:0000049: tRNA binding2.52E-02
95GO:0005262: calcium channel activity2.76E-02
96GO:0019888: protein phosphatase regulator activity2.76E-02
97GO:0009982: pseudouridine synthase activity2.76E-02
98GO:0004565: beta-galactosidase activity2.76E-02
99GO:0004022: alcohol dehydrogenase (NAD) activity2.76E-02
100GO:0003993: acid phosphatase activity2.98E-02
101GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.01E-02
102GO:0008017: microtubule binding3.69E-02
103GO:0031418: L-ascorbic acid binding3.79E-02
104GO:0051087: chaperone binding4.07E-02
105GO:0008408: 3'-5' exonuclease activity4.35E-02
106GO:0004707: MAP kinase activity4.35E-02
107GO:0033612: receptor serine/threonine kinase binding4.35E-02
108GO:0046872: metal ion binding4.90E-02
109GO:0030570: pectate lyase activity4.94E-02
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Gene type



Gene DE type