GO Enrichment Analysis of Co-expressed Genes with
AT5G25630
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010068: protoderm histogenesis | 0.00E+00 |
| 2 | GO:0010412: mannan metabolic process | 0.00E+00 |
| 3 | GO:0071311: cellular response to acetate | 0.00E+00 |
| 4 | GO:0015843: methylammonium transport | 0.00E+00 |
| 5 | GO:0071260: cellular response to mechanical stimulus | 0.00E+00 |
| 6 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 7 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 8 | GO:0009157: deoxyribonucleoside monophosphate biosynthetic process | 0.00E+00 |
| 9 | GO:0009583: detection of light stimulus | 0.00E+00 |
| 10 | GO:0071000: response to magnetism | 0.00E+00 |
| 11 | GO:0031129: inductive cell-cell signaling | 0.00E+00 |
| 12 | GO:0009638: phototropism | 4.00E-06 |
| 13 | GO:0009082: branched-chain amino acid biosynthetic process | 6.14E-05 |
| 14 | GO:0009099: valine biosynthetic process | 6.14E-05 |
| 15 | GO:0010182: sugar mediated signaling pathway | 7.22E-05 |
| 16 | GO:0009097: isoleucine biosynthetic process | 1.33E-04 |
| 17 | GO:0072387: flavin adenine dinucleotide metabolic process | 1.50E-04 |
| 18 | GO:0006264: mitochondrial DNA replication | 1.50E-04 |
| 19 | GO:0033259: plastid DNA replication | 1.50E-04 |
| 20 | GO:0006177: GMP biosynthetic process | 1.50E-04 |
| 21 | GO:0010450: inflorescence meristem growth | 1.50E-04 |
| 22 | GO:1902265: abscisic acid homeostasis | 1.50E-04 |
| 23 | GO:0010482: regulation of epidermal cell division | 1.50E-04 |
| 24 | GO:1900871: chloroplast mRNA modification | 3.42E-04 |
| 25 | GO:0080175: phragmoplast microtubule organization | 3.42E-04 |
| 26 | GO:0010617: circadian regulation of calcium ion oscillation | 3.42E-04 |
| 27 | GO:0099402: plant organ development | 3.42E-04 |
| 28 | GO:0042814: monopolar cell growth | 3.42E-04 |
| 29 | GO:0031648: protein destabilization | 3.42E-04 |
| 30 | GO:0010343: singlet oxygen-mediated programmed cell death | 3.42E-04 |
| 31 | GO:1901529: positive regulation of anion channel activity | 3.42E-04 |
| 32 | GO:2000039: regulation of trichome morphogenesis | 3.42E-04 |
| 33 | GO:0010115: regulation of abscisic acid biosynthetic process | 3.42E-04 |
| 34 | GO:1901672: positive regulation of systemic acquired resistance | 5.61E-04 |
| 35 | GO:0071230: cellular response to amino acid stimulus | 5.61E-04 |
| 36 | GO:0045165: cell fate commitment | 5.61E-04 |
| 37 | GO:0031022: nuclear migration along microfilament | 5.61E-04 |
| 38 | GO:0051127: positive regulation of actin nucleation | 5.61E-04 |
| 39 | GO:1902448: positive regulation of shade avoidance | 5.61E-04 |
| 40 | GO:0045604: regulation of epidermal cell differentiation | 5.61E-04 |
| 41 | GO:0015696: ammonium transport | 8.03E-04 |
| 42 | GO:0048530: fruit morphogenesis | 8.03E-04 |
| 43 | GO:1901332: negative regulation of lateral root development | 8.03E-04 |
| 44 | GO:0046836: glycolipid transport | 8.03E-04 |
| 45 | GO:0051639: actin filament network formation | 8.03E-04 |
| 46 | GO:0006164: purine nucleotide biosynthetic process | 8.03E-04 |
| 47 | GO:0048645: animal organ formation | 8.03E-04 |
| 48 | GO:0009416: response to light stimulus | 8.29E-04 |
| 49 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 9.17E-04 |
| 50 | GO:1902347: response to strigolactone | 1.06E-03 |
| 51 | GO:0009902: chloroplast relocation | 1.06E-03 |
| 52 | GO:0009165: nucleotide biosynthetic process | 1.06E-03 |
| 53 | GO:0051764: actin crosslink formation | 1.06E-03 |
| 54 | GO:0046355: mannan catabolic process | 1.06E-03 |
| 55 | GO:0072488: ammonium transmembrane transport | 1.06E-03 |
| 56 | GO:0006544: glycine metabolic process | 1.35E-03 |
| 57 | GO:0010117: photoprotection | 1.35E-03 |
| 58 | GO:0046283: anthocyanin-containing compound metabolic process | 1.35E-03 |
| 59 | GO:1902183: regulation of shoot apical meristem development | 1.35E-03 |
| 60 | GO:0051225: spindle assembly | 1.35E-03 |
| 61 | GO:0010158: abaxial cell fate specification | 1.35E-03 |
| 62 | GO:0046785: microtubule polymerization | 1.35E-03 |
| 63 | GO:0009117: nucleotide metabolic process | 1.65E-03 |
| 64 | GO:0009635: response to herbicide | 1.65E-03 |
| 65 | GO:0006561: proline biosynthetic process | 1.65E-03 |
| 66 | GO:0006563: L-serine metabolic process | 1.65E-03 |
| 67 | GO:0009959: negative gravitropism | 1.65E-03 |
| 68 | GO:1901371: regulation of leaf morphogenesis | 1.65E-03 |
| 69 | GO:0060918: auxin transport | 1.65E-03 |
| 70 | GO:0006139: nucleobase-containing compound metabolic process | 1.65E-03 |
| 71 | GO:2000033: regulation of seed dormancy process | 1.98E-03 |
| 72 | GO:0009903: chloroplast avoidance movement | 1.98E-03 |
| 73 | GO:0048444: floral organ morphogenesis | 1.98E-03 |
| 74 | GO:0010310: regulation of hydrogen peroxide metabolic process | 1.98E-03 |
| 75 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 1.98E-03 |
| 76 | GO:0042372: phylloquinone biosynthetic process | 1.98E-03 |
| 77 | GO:0010029: regulation of seed germination | 1.99E-03 |
| 78 | GO:0010444: guard mother cell differentiation | 2.33E-03 |
| 79 | GO:0051510: regulation of unidimensional cell growth | 2.33E-03 |
| 80 | GO:0010161: red light signaling pathway | 2.33E-03 |
| 81 | GO:0009610: response to symbiotic fungus | 2.33E-03 |
| 82 | GO:0042255: ribosome assembly | 2.70E-03 |
| 83 | GO:0009704: de-etiolation | 2.70E-03 |
| 84 | GO:0007155: cell adhesion | 2.70E-03 |
| 85 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.70E-03 |
| 86 | GO:0010100: negative regulation of photomorphogenesis | 3.08E-03 |
| 87 | GO:0006997: nucleus organization | 3.08E-03 |
| 88 | GO:0010093: specification of floral organ identity | 3.08E-03 |
| 89 | GO:0010099: regulation of photomorphogenesis | 3.08E-03 |
| 90 | GO:0006002: fructose 6-phosphate metabolic process | 3.08E-03 |
| 91 | GO:0009637: response to blue light | 3.09E-03 |
| 92 | GO:2000024: regulation of leaf development | 3.49E-03 |
| 93 | GO:0006783: heme biosynthetic process | 3.49E-03 |
| 94 | GO:0000373: Group II intron splicing | 3.49E-03 |
| 95 | GO:0006189: 'de novo' IMP biosynthetic process | 3.49E-03 |
| 96 | GO:0009051: pentose-phosphate shunt, oxidative branch | 3.49E-03 |
| 97 | GO:0051865: protein autoubiquitination | 3.49E-03 |
| 98 | GO:0008202: steroid metabolic process | 3.91E-03 |
| 99 | GO:0008356: asymmetric cell division | 3.91E-03 |
| 100 | GO:1900426: positive regulation of defense response to bacterium | 3.91E-03 |
| 101 | GO:0009098: leucine biosynthetic process | 3.91E-03 |
| 102 | GO:1900865: chloroplast RNA modification | 3.91E-03 |
| 103 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 3.91E-03 |
| 104 | GO:0006535: cysteine biosynthetic process from serine | 4.35E-03 |
| 105 | GO:0009688: abscisic acid biosynthetic process | 4.35E-03 |
| 106 | GO:0010192: mucilage biosynthetic process | 4.35E-03 |
| 107 | GO:0010162: seed dormancy process | 4.35E-03 |
| 108 | GO:0009299: mRNA transcription | 4.35E-03 |
| 109 | GO:0009750: response to fructose | 4.80E-03 |
| 110 | GO:0006816: calcium ion transport | 4.80E-03 |
| 111 | GO:0046777: protein autophosphorylation | 5.22E-03 |
| 112 | GO:0009585: red, far-red light phototransduction | 5.35E-03 |
| 113 | GO:0006006: glucose metabolic process | 5.75E-03 |
| 114 | GO:0030036: actin cytoskeleton organization | 5.75E-03 |
| 115 | GO:0010075: regulation of meristem growth | 5.75E-03 |
| 116 | GO:0009725: response to hormone | 5.75E-03 |
| 117 | GO:0030048: actin filament-based movement | 5.75E-03 |
| 118 | GO:0009785: blue light signaling pathway | 5.75E-03 |
| 119 | GO:0009909: regulation of flower development | 5.92E-03 |
| 120 | GO:0009933: meristem structural organization | 6.25E-03 |
| 121 | GO:0010030: positive regulation of seed germination | 6.77E-03 |
| 122 | GO:0009825: multidimensional cell growth | 6.77E-03 |
| 123 | GO:0009740: gibberellic acid mediated signaling pathway | 7.17E-03 |
| 124 | GO:0010187: negative regulation of seed germination | 7.84E-03 |
| 125 | GO:0051017: actin filament bundle assembly | 7.84E-03 |
| 126 | GO:2000377: regulation of reactive oxygen species metabolic process | 7.84E-03 |
| 127 | GO:0005992: trehalose biosynthetic process | 7.84E-03 |
| 128 | GO:0019344: cysteine biosynthetic process | 7.84E-03 |
| 129 | GO:0009944: polarity specification of adaxial/abaxial axis | 7.84E-03 |
| 130 | GO:0007010: cytoskeleton organization | 7.84E-03 |
| 131 | GO:0009742: brassinosteroid mediated signaling pathway | 8.07E-03 |
| 132 | GO:0006874: cellular calcium ion homeostasis | 8.40E-03 |
| 133 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 9.56E-03 |
| 134 | GO:0010017: red or far-red light signaling pathway | 9.56E-03 |
| 135 | GO:0035428: hexose transmembrane transport | 9.56E-03 |
| 136 | GO:0009686: gibberellin biosynthetic process | 1.02E-02 |
| 137 | GO:0042127: regulation of cell proliferation | 1.08E-02 |
| 138 | GO:0010091: trichome branching | 1.08E-02 |
| 139 | GO:0019722: calcium-mediated signaling | 1.08E-02 |
| 140 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.14E-02 |
| 141 | GO:0070417: cellular response to cold | 1.14E-02 |
| 142 | GO:0034220: ion transmembrane transport | 1.20E-02 |
| 143 | GO:0010118: stomatal movement | 1.20E-02 |
| 144 | GO:0042631: cellular response to water deprivation | 1.20E-02 |
| 145 | GO:0000226: microtubule cytoskeleton organization | 1.20E-02 |
| 146 | GO:0042335: cuticle development | 1.20E-02 |
| 147 | GO:0046323: glucose import | 1.27E-02 |
| 148 | GO:0008360: regulation of cell shape | 1.27E-02 |
| 149 | GO:0010154: fruit development | 1.27E-02 |
| 150 | GO:0007623: circadian rhythm | 1.32E-02 |
| 151 | GO:0042752: regulation of circadian rhythm | 1.34E-02 |
| 152 | GO:0009646: response to absence of light | 1.34E-02 |
| 153 | GO:0016310: phosphorylation | 1.36E-02 |
| 154 | GO:0009735: response to cytokinin | 1.46E-02 |
| 155 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.47E-02 |
| 156 | GO:0032502: developmental process | 1.55E-02 |
| 157 | GO:0010583: response to cyclopentenone | 1.55E-02 |
| 158 | GO:0009738: abscisic acid-activated signaling pathway | 1.56E-02 |
| 159 | GO:0010090: trichome morphogenesis | 1.62E-02 |
| 160 | GO:0071281: cellular response to iron ion | 1.62E-02 |
| 161 | GO:0006464: cellular protein modification process | 1.69E-02 |
| 162 | GO:0009826: unidimensional cell growth | 1.97E-02 |
| 163 | GO:0009658: chloroplast organization | 2.05E-02 |
| 164 | GO:0015995: chlorophyll biosynthetic process | 2.15E-02 |
| 165 | GO:0030244: cellulose biosynthetic process | 2.31E-02 |
| 166 | GO:0018298: protein-chromophore linkage | 2.31E-02 |
| 167 | GO:0000160: phosphorelay signal transduction system | 2.40E-02 |
| 168 | GO:0010218: response to far red light | 2.48E-02 |
| 169 | GO:0009853: photorespiration | 2.74E-02 |
| 170 | GO:0055114: oxidation-reduction process | 2.94E-02 |
| 171 | GO:0006839: mitochondrial transport | 3.00E-02 |
| 172 | GO:0006631: fatty acid metabolic process | 3.09E-02 |
| 173 | GO:0007165: signal transduction | 3.25E-02 |
| 174 | GO:0009640: photomorphogenesis | 3.28E-02 |
| 175 | GO:0010114: response to red light | 3.28E-02 |
| 176 | GO:0006355: regulation of transcription, DNA-templated | 3.37E-02 |
| 177 | GO:0009644: response to high light intensity | 3.47E-02 |
| 178 | GO:0009965: leaf morphogenesis | 3.56E-02 |
| 179 | GO:0006260: DNA replication | 3.76E-02 |
| 180 | GO:0006468: protein phosphorylation | 3.78E-02 |
| 181 | GO:0009664: plant-type cell wall organization | 3.85E-02 |
| 182 | GO:0006397: mRNA processing | 3.90E-02 |
| 183 | GO:0009736: cytokinin-activated signaling pathway | 4.05E-02 |
| 184 | GO:0006417: regulation of translation | 4.36E-02 |
| 185 | GO:0030154: cell differentiation | 4.37E-02 |
| 186 | GO:0006096: glycolytic process | 4.56E-02 |
| 187 | GO:0048367: shoot system development | 4.67E-02 |
| 188 | GO:0048316: seed development | 4.67E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 2 | GO:0015276: ligand-gated ion channel activity | 0.00E+00 |
| 3 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 4 | GO:0019136: deoxynucleoside kinase activity | 0.00E+00 |
| 5 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 6 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 7 | GO:0010313: phytochrome binding | 1.50E-04 |
| 8 | GO:0003984: acetolactate synthase activity | 1.50E-04 |
| 9 | GO:0050139: nicotinate-N-glucosyltransferase activity | 1.50E-04 |
| 10 | GO:0008066: glutamate receptor activity | 1.50E-04 |
| 11 | GO:0050017: L-3-cyanoalanine synthase activity | 3.42E-04 |
| 12 | GO:0017118: lipoyltransferase activity | 3.42E-04 |
| 13 | GO:0043425: bHLH transcription factor binding | 3.42E-04 |
| 14 | GO:0003938: IMP dehydrogenase activity | 3.42E-04 |
| 15 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 3.42E-04 |
| 16 | GO:0052656: L-isoleucine transaminase activity | 8.03E-04 |
| 17 | GO:0009882: blue light photoreceptor activity | 8.03E-04 |
| 18 | GO:0052654: L-leucine transaminase activity | 8.03E-04 |
| 19 | GO:0052655: L-valine transaminase activity | 8.03E-04 |
| 20 | GO:0017089: glycolipid transporter activity | 8.03E-04 |
| 21 | GO:0035529: NADH pyrophosphatase activity | 8.03E-04 |
| 22 | GO:0003727: single-stranded RNA binding | 8.59E-04 |
| 23 | GO:0004737: pyruvate decarboxylase activity | 1.06E-03 |
| 24 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 1.06E-03 |
| 25 | GO:0008409: 5'-3' exonuclease activity | 1.06E-03 |
| 26 | GO:0051861: glycolipid binding | 1.06E-03 |
| 27 | GO:0016985: mannan endo-1,4-beta-mannosidase activity | 1.06E-03 |
| 28 | GO:0080032: methyl jasmonate esterase activity | 1.06E-03 |
| 29 | GO:0004084: branched-chain-amino-acid transaminase activity | 1.06E-03 |
| 30 | GO:0004871: signal transducer activity | 1.22E-03 |
| 31 | GO:0004372: glycine hydroxymethyltransferase activity | 1.35E-03 |
| 32 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.35E-03 |
| 33 | GO:0016208: AMP binding | 1.65E-03 |
| 34 | GO:0016462: pyrophosphatase activity | 1.65E-03 |
| 35 | GO:0008519: ammonium transmembrane transporter activity | 1.65E-03 |
| 36 | GO:0030976: thiamine pyrophosphate binding | 1.65E-03 |
| 37 | GO:0004709: MAP kinase kinase kinase activity | 1.65E-03 |
| 38 | GO:0004124: cysteine synthase activity | 1.98E-03 |
| 39 | GO:0003872: 6-phosphofructokinase activity | 2.33E-03 |
| 40 | GO:0016301: kinase activity | 2.52E-03 |
| 41 | GO:0042802: identical protein binding | 2.84E-03 |
| 42 | GO:0008142: oxysterol binding | 3.08E-03 |
| 43 | GO:0071949: FAD binding | 3.49E-03 |
| 44 | GO:0005515: protein binding | 3.62E-03 |
| 45 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.30E-03 |
| 46 | GO:0004805: trehalose-phosphatase activity | 4.35E-03 |
| 47 | GO:0008794: arsenate reductase (glutaredoxin) activity | 4.80E-03 |
| 48 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 4.80E-03 |
| 49 | GO:0004022: alcohol dehydrogenase (NAD) activity | 5.75E-03 |
| 50 | GO:0005262: calcium channel activity | 5.75E-03 |
| 51 | GO:0008131: primary amine oxidase activity | 6.25E-03 |
| 52 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 6.25E-03 |
| 53 | GO:0005217: intracellular ligand-gated ion channel activity | 6.77E-03 |
| 54 | GO:0004970: ionotropic glutamate receptor activity | 6.77E-03 |
| 55 | GO:0003887: DNA-directed DNA polymerase activity | 7.30E-03 |
| 56 | GO:0004176: ATP-dependent peptidase activity | 8.97E-03 |
| 57 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 8.97E-03 |
| 58 | GO:0005524: ATP binding | 9.06E-03 |
| 59 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 1.23E-02 |
| 60 | GO:0001085: RNA polymerase II transcription factor binding | 1.27E-02 |
| 61 | GO:0005355: glucose transmembrane transporter activity | 1.34E-02 |
| 62 | GO:0010181: FMN binding | 1.34E-02 |
| 63 | GO:0008017: microtubule binding | 1.38E-02 |
| 64 | GO:0000156: phosphorelay response regulator activity | 1.62E-02 |
| 65 | GO:0051015: actin filament binding | 1.62E-02 |
| 66 | GO:0004674: protein serine/threonine kinase activity | 1.63E-02 |
| 67 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 1.73E-02 |
| 68 | GO:0008237: metallopeptidase activity | 1.76E-02 |
| 69 | GO:0004672: protein kinase activity | 1.94E-02 |
| 70 | GO:0016788: hydrolase activity, acting on ester bonds | 2.09E-02 |
| 71 | GO:0030247: polysaccharide binding | 2.15E-02 |
| 72 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 2.31E-02 |
| 73 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.48E-02 |
| 74 | GO:0004222: metalloendopeptidase activity | 2.48E-02 |
| 75 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 2.56E-02 |
| 76 | GO:0050897: cobalt ion binding | 2.56E-02 |
| 77 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.91E-02 |
| 78 | GO:0050661: NADP binding | 3.00E-02 |
| 79 | GO:0042803: protein homodimerization activity | 3.18E-02 |
| 80 | GO:0043621: protein self-association | 3.47E-02 |
| 81 | GO:0051287: NAD binding | 3.76E-02 |
| 82 | GO:0008270: zinc ion binding | 3.85E-02 |
| 83 | GO:0003690: double-stranded DNA binding | 4.15E-02 |
| 84 | GO:0046872: metal ion binding | 4.53E-02 |
| 85 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 4.88E-02 |
| 86 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 4.88E-02 |
| 87 | GO:0016874: ligase activity | 4.99E-02 |