Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G25540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006983: ER overload response0.00E+00
2GO:0032491: detection of molecule of fungal origin0.00E+00
3GO:0006497: protein lipidation0.00E+00
4GO:0032499: detection of peptidoglycan0.00E+00
5GO:0045900: negative regulation of translational elongation0.00E+00
6GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
7GO:0010647: positive regulation of cell communication0.00E+00
8GO:1902001: fatty acid transmembrane transport0.00E+00
9GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
10GO:0010273: detoxification of copper ion0.00E+00
11GO:0002764: immune response-regulating signaling pathway0.00E+00
12GO:0016559: peroxisome fission1.58E-05
13GO:0006979: response to oxidative stress1.18E-04
14GO:0015031: protein transport2.51E-04
15GO:0010045: response to nickel cation3.97E-04
16GO:0042350: GDP-L-fucose biosynthetic process3.97E-04
17GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.97E-04
18GO:0009609: response to symbiotic bacterium3.97E-04
19GO:0033306: phytol metabolic process3.97E-04
20GO:1901430: positive regulation of syringal lignin biosynthetic process3.97E-04
21GO:0006643: membrane lipid metabolic process3.97E-04
22GO:1900150: regulation of defense response to fungus4.58E-04
23GO:0010204: defense response signaling pathway, resistance gene-independent5.59E-04
24GO:0010497: plasmodesmata-mediated intercellular transport5.59E-04
25GO:0010150: leaf senescence5.79E-04
26GO:0010112: regulation of systemic acquired resistance6.69E-04
27GO:0060919: auxin influx8.60E-04
28GO:0010271: regulation of chlorophyll catabolic process8.60E-04
29GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine8.60E-04
30GO:0010541: acropetal auxin transport8.60E-04
31GO:0015012: heparan sulfate proteoglycan biosynthetic process8.60E-04
32GO:0071668: plant-type cell wall assembly8.60E-04
33GO:0006024: glycosaminoglycan biosynthetic process8.60E-04
34GO:0055088: lipid homeostasis8.60E-04
35GO:0019374: galactolipid metabolic process8.60E-04
36GO:0015908: fatty acid transport8.60E-04
37GO:0002240: response to molecule of oomycetes origin8.60E-04
38GO:0044419: interspecies interaction between organisms8.60E-04
39GO:0010115: regulation of abscisic acid biosynthetic process8.60E-04
40GO:0031349: positive regulation of defense response8.60E-04
41GO:0043066: negative regulation of apoptotic process8.60E-04
42GO:0010042: response to manganese ion8.60E-04
43GO:0050832: defense response to fungus1.08E-03
44GO:0000266: mitochondrial fission1.21E-03
45GO:0016045: detection of bacterium1.40E-03
46GO:0010359: regulation of anion channel activity1.40E-03
47GO:0042351: 'de novo' GDP-L-fucose biosynthetic process1.40E-03
48GO:0044375: regulation of peroxisome size1.40E-03
49GO:1900055: regulation of leaf senescence1.40E-03
50GO:0002230: positive regulation of defense response to virus by host1.40E-03
51GO:0034605: cellular response to heat1.54E-03
52GO:0070588: calcium ion transmembrane transport1.73E-03
53GO:0046688: response to copper ion1.73E-03
54GO:0007568: aging1.76E-03
55GO:0016192: vesicle-mediated transport1.99E-03
56GO:0071323: cellular response to chitin2.02E-03
57GO:1902290: positive regulation of defense response to oomycetes2.02E-03
58GO:0043207: response to external biotic stimulus2.02E-03
59GO:0030100: regulation of endocytosis2.02E-03
60GO:0009226: nucleotide-sugar biosynthetic process2.02E-03
61GO:0006825: copper ion transport2.36E-03
62GO:0045227: capsule polysaccharide biosynthetic process2.71E-03
63GO:0033358: UDP-L-arabinose biosynthetic process2.71E-03
64GO:0033356: UDP-L-arabinose metabolic process2.71E-03
65GO:0071219: cellular response to molecule of bacterial origin2.71E-03
66GO:0097428: protein maturation by iron-sulfur cluster transfer3.47E-03
67GO:0009229: thiamine diphosphate biosynthetic process3.47E-03
68GO:0016094: polyprenol biosynthetic process3.47E-03
69GO:0006465: signal peptide processing3.47E-03
70GO:0030308: negative regulation of cell growth3.47E-03
71GO:0034052: positive regulation of plant-type hypersensitive response3.47E-03
72GO:0000304: response to singlet oxygen3.47E-03
73GO:0009617: response to bacterium3.60E-03
74GO:0006486: protein glycosylation4.00E-03
75GO:0006574: valine catabolic process4.29E-03
76GO:0002238: response to molecule of fungal origin4.29E-03
77GO:0006014: D-ribose metabolic process4.29E-03
78GO:0010315: auxin efflux4.29E-03
79GO:1900425: negative regulation of defense response to bacterium4.29E-03
80GO:0009228: thiamine biosynthetic process4.29E-03
81GO:0006096: glycolytic process4.95E-03
82GO:0031930: mitochondria-nucleus signaling pathway5.17E-03
83GO:0048509: regulation of meristem development5.17E-03
84GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response5.17E-03
85GO:0071554: cell wall organization or biogenesis5.26E-03
86GO:0009626: plant-type hypersensitive response5.37E-03
87GO:0009620: response to fungus5.59E-03
88GO:1900057: positive regulation of leaf senescence6.11E-03
89GO:0010038: response to metal ion6.11E-03
90GO:0010044: response to aluminum ion6.11E-03
91GO:0009610: response to symbiotic fungus6.11E-03
92GO:0046470: phosphatidylcholine metabolic process6.11E-03
93GO:0006614: SRP-dependent cotranslational protein targeting to membrane6.11E-03
94GO:0006952: defense response6.66E-03
95GO:0009850: auxin metabolic process7.10E-03
96GO:0006605: protein targeting7.10E-03
97GO:0006644: phospholipid metabolic process7.10E-03
98GO:0009787: regulation of abscisic acid-activated signaling pathway7.10E-03
99GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline7.10E-03
100GO:0010208: pollen wall assembly8.15E-03
101GO:0006367: transcription initiation from RNA polymerase II promoter8.15E-03
102GO:0006098: pentose-phosphate shunt9.25E-03
103GO:0019432: triglyceride biosynthetic process9.25E-03
104GO:0080144: amino acid homeostasis9.25E-03
105GO:0009817: defense response to fungus, incompatible interaction9.96E-03
106GO:0006886: intracellular protein transport1.02E-02
107GO:1900426: positive regulation of defense response to bacterium1.04E-02
108GO:0030042: actin filament depolymerization1.04E-02
109GO:0010380: regulation of chlorophyll biosynthetic process1.04E-02
110GO:2000280: regulation of root development1.04E-02
111GO:0009407: toxin catabolic process1.10E-02
112GO:0006032: chitin catabolic process1.16E-02
113GO:0043069: negative regulation of programmed cell death1.16E-02
114GO:0010215: cellulose microfibril organization1.16E-02
115GO:0043085: positive regulation of catalytic activity1.29E-02
116GO:0030148: sphingolipid biosynthetic process1.29E-02
117GO:0000038: very long-chain fatty acid metabolic process1.29E-02
118GO:0019684: photosynthesis, light reaction1.29E-02
119GO:0045037: protein import into chloroplast stroma1.42E-02
120GO:0006470: protein dephosphorylation1.50E-02
121GO:0006897: endocytosis1.51E-02
122GO:0006006: glucose metabolic process1.55E-02
123GO:0051707: response to other organism1.64E-02
124GO:0007034: vacuolar transport1.69E-02
125GO:0010540: basipetal auxin transport1.69E-02
126GO:0002237: response to molecule of bacterial origin1.69E-02
127GO:0010053: root epidermal cell differentiation1.83E-02
128GO:0009225: nucleotide-sugar metabolic process1.83E-02
129GO:0007031: peroxisome organization1.83E-02
130GO:0010167: response to nitrate1.83E-02
131GO:0009636: response to toxic substance1.84E-02
132GO:0034976: response to endoplasmic reticulum stress1.98E-02
133GO:2000377: regulation of reactive oxygen species metabolic process2.13E-02
134GO:0005992: trehalose biosynthetic process2.13E-02
135GO:0009863: salicylic acid mediated signaling pathway2.13E-02
136GO:0080147: root hair cell development2.13E-02
137GO:0009809: lignin biosynthetic process2.21E-02
138GO:0010073: meristem maintenance2.29E-02
139GO:0051302: regulation of cell division2.29E-02
140GO:0016998: cell wall macromolecule catabolic process2.44E-02
141GO:0007005: mitochondrion organization2.61E-02
142GO:0071456: cellular response to hypoxia2.61E-02
143GO:0030245: cellulose catabolic process2.61E-02
144GO:0006012: galactose metabolic process2.77E-02
145GO:0009306: protein secretion2.94E-02
146GO:0010089: xylem development2.94E-02
147GO:0010584: pollen exine formation2.94E-02
148GO:0006284: base-excision repair2.94E-02
149GO:0010200: response to chitin3.00E-02
150GO:0070417: cellular response to cold3.12E-02
151GO:0080022: primary root development3.29E-02
152GO:0000413: protein peptidyl-prolyl isomerization3.29E-02
153GO:0035556: intracellular signal transduction3.40E-02
154GO:0006468: protein phosphorylation3.45E-02
155GO:0006662: glycerol ether metabolic process3.48E-02
156GO:0071472: cellular response to salt stress3.48E-02
157GO:0045454: cell redox homeostasis3.59E-02
158GO:0009749: response to glucose3.85E-02
159GO:0019252: starch biosynthetic process3.85E-02
160GO:0009630: gravitropism4.23E-02
161GO:0030163: protein catabolic process4.43E-02
162GO:0042744: hydrogen peroxide catabolic process4.47E-02
163GO:0016042: lipid catabolic process4.49E-02
164GO:0006457: protein folding4.57E-02
165GO:0006914: autophagy4.63E-02
166GO:0010286: heat acclimation4.83E-02
167GO:0006904: vesicle docking involved in exocytosis4.83E-02
RankGO TermAdjusted P value
1GO:0050334: thiaminase activity0.00E+00
2GO:2001080: chitosan binding0.00E+00
3GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
4GO:0052821: DNA-7-methyladenine glycosylase activity0.00E+00
5GO:0003905: alkylbase DNA N-glycosylase activity0.00E+00
6GO:0043916: DNA-7-methylguanine glycosylase activity0.00E+00
7GO:0005212: structural constituent of eye lens0.00E+00
8GO:0052822: DNA-3-methylguanine glycosylase activity0.00E+00
9GO:0008320: protein transmembrane transporter activity1.06E-05
10GO:0019199: transmembrane receptor protein kinase activity9.42E-05
11GO:0005496: steroid binding1.46E-04
12GO:0019707: protein-cysteine S-acyltransferase activity3.97E-04
13GO:0015245: fatty acid transporter activity3.97E-04
14GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity3.97E-04
15GO:0004649: poly(ADP-ribose) glycohydrolase activity3.97E-04
16GO:0050577: GDP-L-fucose synthase activity3.97E-04
17GO:0015927: trehalase activity3.97E-04
18GO:0030955: potassium ion binding7.90E-04
19GO:0004743: pyruvate kinase activity7.90E-04
20GO:0015036: disulfide oxidoreductase activity8.60E-04
21GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity8.60E-04
22GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity8.60E-04
23GO:0019779: Atg8 activating enzyme activity8.60E-04
24GO:0045140: inositol phosphoceramide synthase activity8.60E-04
25GO:0005388: calcium-transporting ATPase activity1.37E-03
26GO:0000030: mannosyltransferase activity1.40E-03
27GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity1.40E-03
28GO:0005047: signal recognition particle binding1.40E-03
29GO:0016531: copper chaperone activity1.40E-03
30GO:0010178: IAA-amino acid conjugate hydrolase activity2.02E-03
31GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity2.02E-03
32GO:0019706: protein-cysteine S-palmitoyltransferase activity2.60E-03
33GO:0050373: UDP-arabinose 4-epimerase activity2.71E-03
34GO:0010328: auxin influx transmembrane transporter activity2.71E-03
35GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.47E-03
36GO:0008725: DNA-3-methyladenine glycosylase activity3.47E-03
37GO:0005546: phosphatidylinositol-4,5-bisphosphate binding3.47E-03
38GO:0002094: polyprenyltransferase activity3.47E-03
39GO:0003978: UDP-glucose 4-epimerase activity5.17E-03
40GO:0004602: glutathione peroxidase activity5.17E-03
41GO:0004144: diacylglycerol O-acyltransferase activity5.17E-03
42GO:0004656: procollagen-proline 4-dioxygenase activity5.17E-03
43GO:0051920: peroxiredoxin activity5.17E-03
44GO:0004747: ribokinase activity5.17E-03
45GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.17E-03
46GO:0004620: phospholipase activity6.11E-03
47GO:0008865: fructokinase activity7.10E-03
48GO:0004714: transmembrane receptor protein tyrosine kinase activity7.10E-03
49GO:0016209: antioxidant activity7.10E-03
50GO:0008312: 7S RNA binding7.10E-03
51GO:0016413: O-acetyltransferase activity7.19E-03
52GO:0004630: phospholipase D activity8.15E-03
53GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity8.15E-03
54GO:0047617: acyl-CoA hydrolase activity1.04E-02
55GO:0016301: kinase activity1.09E-02
56GO:0004805: trehalose-phosphatase activity1.16E-02
57GO:0004568: chitinase activity1.16E-02
58GO:0008171: O-methyltransferase activity1.16E-02
59GO:0008047: enzyme activator activity1.16E-02
60GO:0015020: glucuronosyltransferase activity1.16E-02
61GO:0004713: protein tyrosine kinase activity1.16E-02
62GO:0008559: xenobiotic-transporting ATPase activity1.29E-02
63GO:0004712: protein serine/threonine/tyrosine kinase activity1.38E-02
64GO:0003824: catalytic activity1.41E-02
65GO:0050661: NADP binding1.44E-02
66GO:0005262: calcium channel activity1.55E-02
67GO:0010329: auxin efflux transmembrane transporter activity1.55E-02
68GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.55E-02
69GO:0004364: glutathione transferase activity1.57E-02
70GO:0004175: endopeptidase activity1.69E-02
71GO:0004190: aspartic-type endopeptidase activity1.83E-02
72GO:0008061: chitin binding1.83E-02
73GO:0005198: structural molecule activity1.84E-02
74GO:0051287: NAD binding1.98E-02
75GO:0051536: iron-sulfur cluster binding2.13E-02
76GO:0031418: L-ascorbic acid binding2.13E-02
77GO:0003954: NADH dehydrogenase activity2.13E-02
78GO:0004601: peroxidase activity2.20E-02
79GO:0004672: protein kinase activity2.44E-02
80GO:0016887: ATPase activity2.58E-02
81GO:0045735: nutrient reservoir activity2.61E-02
82GO:0008810: cellulase activity2.77E-02
83GO:0080043: quercetin 3-O-glucosyltransferase activity2.87E-02
84GO:0080044: quercetin 7-O-glucosyltransferase activity2.87E-02
85GO:0005509: calcium ion binding2.87E-02
86GO:0003756: protein disulfide isomerase activity2.94E-02
87GO:0004499: N,N-dimethylaniline monooxygenase activity2.94E-02
88GO:0047134: protein-disulfide reductase activity3.12E-02
89GO:0050662: coenzyme binding3.66E-02
90GO:0004791: thioredoxin-disulfide reductase activity3.66E-02
91GO:0016853: isomerase activity3.66E-02
92GO:0004871: signal transducer activity3.81E-02
93GO:0004722: protein serine/threonine phosphatase activity4.03E-02
94GO:0005515: protein binding4.18E-02
95GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.43E-02
96GO:0016722: oxidoreductase activity, oxidizing metal ions4.83E-02
97GO:0008237: metallopeptidase activity4.83E-02
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Gene type



Gene DE type