Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G23350

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015843: methylammonium transport0.00E+00
2GO:0042794: rRNA transcription from plastid promoter0.00E+00
3GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
4GO:1901698: response to nitrogen compound0.00E+00
5GO:0009606: tropism0.00E+00
6GO:0090322: regulation of superoxide metabolic process0.00E+00
7GO:0097164: ammonium ion metabolic process0.00E+00
8GO:1903224: regulation of endodermal cell differentiation0.00E+00
9GO:0045184: establishment of protein localization0.00E+00
10GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
11GO:0010480: microsporocyte differentiation0.00E+00
12GO:0042793: transcription from plastid promoter1.46E-08
13GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.15E-07
14GO:2000038: regulation of stomatal complex development6.89E-05
15GO:0006955: immune response2.76E-04
16GO:0048437: floral organ development2.76E-04
17GO:0006436: tryptophanyl-tRNA aminoacylation3.29E-04
18GO:0010342: endosperm cellularization3.29E-04
19GO:0034757: negative regulation of iron ion transport3.29E-04
20GO:0006427: histidyl-tRNA aminoacylation3.29E-04
21GO:0042659: regulation of cell fate specification3.29E-04
22GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic3.29E-04
23GO:0090558: plant epidermis development3.29E-04
24GO:1903866: palisade mesophyll development3.29E-04
25GO:0033206: meiotic cytokinesis3.29E-04
26GO:0035987: endodermal cell differentiation3.29E-04
27GO:0043609: regulation of carbon utilization3.29E-04
28GO:0000105: histidine biosynthetic process3.48E-04
29GO:0009451: RNA modification3.65E-04
30GO:0007389: pattern specification process4.26E-04
31GO:0006468: protein phosphorylation6.08E-04
32GO:0006529: asparagine biosynthetic process7.18E-04
33GO:2000123: positive regulation of stomatal complex development7.18E-04
34GO:0010254: nectary development7.18E-04
35GO:0010434: bract formation7.18E-04
36GO:0070981: L-asparagine biosynthetic process7.18E-04
37GO:0010271: regulation of chlorophyll catabolic process7.18E-04
38GO:0048439: flower morphogenesis7.18E-04
39GO:0009662: etioplast organization7.18E-04
40GO:0080009: mRNA methylation7.18E-04
41GO:0009658: chloroplast organization7.68E-04
42GO:0048229: gametophyte development8.13E-04
43GO:0010075: regulation of meristem growth1.05E-03
44GO:0009767: photosynthetic electron transport chain1.05E-03
45GO:0009734: auxin-activated signaling pathway1.07E-03
46GO:0000160: phosphorelay signal transduction system1.10E-03
47GO:0009954: proximal/distal pattern formation1.16E-03
48GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.16E-03
49GO:0090708: specification of plant organ axis polarity1.16E-03
50GO:0006000: fructose metabolic process1.16E-03
51GO:0080117: secondary growth1.16E-03
52GO:0090391: granum assembly1.16E-03
53GO:0071705: nitrogen compound transport1.16E-03
54GO:0042780: tRNA 3'-end processing1.16E-03
55GO:0001578: microtubule bundle formation1.16E-03
56GO:0009934: regulation of meristem structural organization1.18E-03
57GO:0009944: polarity specification of adaxial/abaxial axis1.63E-03
58GO:1902476: chloride transmembrane transport1.67E-03
59GO:0010239: chloroplast mRNA processing1.67E-03
60GO:0044211: CTP salvage1.67E-03
61GO:0019048: modulation by virus of host morphology or physiology1.67E-03
62GO:0009800: cinnamic acid biosynthetic process1.67E-03
63GO:0031048: chromatin silencing by small RNA1.67E-03
64GO:0015696: ammonium transport1.67E-03
65GO:0046739: transport of virus in multicellular host1.67E-03
66GO:2000904: regulation of starch metabolic process1.67E-03
67GO:0051289: protein homotetramerization1.67E-03
68GO:0043572: plastid fission1.67E-03
69GO:0009926: auxin polar transport1.92E-03
70GO:0006306: DNA methylation1.97E-03
71GO:0016998: cell wall macromolecule catabolic process1.97E-03
72GO:0006479: protein methylation2.24E-03
73GO:0051322: anaphase2.24E-03
74GO:0071249: cellular response to nitrate2.24E-03
75GO:0072488: ammonium transmembrane transport2.24E-03
76GO:0000914: phragmoplast assembly2.24E-03
77GO:0030104: water homeostasis2.24E-03
78GO:0046656: folic acid biosynthetic process2.24E-03
79GO:0051567: histone H3-K9 methylation2.24E-03
80GO:0006021: inositol biosynthetic process2.24E-03
81GO:0044206: UMP salvage2.24E-03
82GO:0006346: methylation-dependent chromatin silencing2.24E-03
83GO:0010082: regulation of root meristem growth2.36E-03
84GO:0009736: cytokinin-activated signaling pathway2.81E-03
85GO:1902183: regulation of shoot apical meristem development2.87E-03
86GO:0016123: xanthophyll biosynthetic process2.87E-03
87GO:0032876: negative regulation of DNA endoreduplication2.87E-03
88GO:0030308: negative regulation of cell growth2.87E-03
89GO:0010375: stomatal complex patterning2.87E-03
90GO:0006544: glycine metabolic process2.87E-03
91GO:0048497: maintenance of floral organ identity2.87E-03
92GO:0048653: anther development3.00E-03
93GO:0010405: arabinogalactan protein metabolic process3.54E-03
94GO:0016554: cytidine to uridine editing3.54E-03
95GO:0009913: epidermal cell differentiation3.54E-03
96GO:0042176: regulation of protein catabolic process3.54E-03
97GO:0010315: auxin efflux3.54E-03
98GO:0048831: regulation of shoot system development3.54E-03
99GO:0006559: L-phenylalanine catabolic process3.54E-03
100GO:0006206: pyrimidine nucleobase metabolic process3.54E-03
101GO:0018258: protein O-linked glycosylation via hydroxyproline3.54E-03
102GO:0016458: gene silencing3.54E-03
103GO:0009643: photosynthetic acclimation3.54E-03
104GO:0006563: L-serine metabolic process3.54E-03
105GO:2000037: regulation of stomatal complex patterning4.26E-03
106GO:0010310: regulation of hydrogen peroxide metabolic process4.26E-03
107GO:2000067: regulation of root morphogenesis4.26E-03
108GO:0071470: cellular response to osmotic stress4.26E-03
109GO:2000033: regulation of seed dormancy process4.26E-03
110GO:0048509: regulation of meristem development4.26E-03
111GO:0046654: tetrahydrofolate biosynthetic process4.26E-03
112GO:0030488: tRNA methylation4.26E-03
113GO:0010252: auxin homeostasis4.83E-03
114GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway5.03E-03
115GO:0009610: response to symbiotic fungus5.03E-03
116GO:0006821: chloride transport5.03E-03
117GO:0009396: folic acid-containing compound biosynthetic process5.03E-03
118GO:0000910: cytokinesis5.44E-03
119GO:0010027: thylakoid membrane organization5.76E-03
120GO:0009938: negative regulation of gibberellic acid mediated signaling pathway5.85E-03
121GO:0001522: pseudouridine synthesis5.85E-03
122GO:0030162: regulation of proteolysis5.85E-03
123GO:0042255: ribosome assembly5.85E-03
124GO:0046620: regulation of organ growth5.85E-03
125GO:0006353: DNA-templated transcription, termination5.85E-03
126GO:0048766: root hair initiation5.85E-03
127GO:0055075: potassium ion homeostasis5.85E-03
128GO:0009416: response to light stimulus6.07E-03
129GO:0010029: regulation of seed germination6.09E-03
130GO:0006002: fructose 6-phosphate metabolic process6.71E-03
131GO:0010497: plasmodesmata-mediated intercellular transport6.71E-03
132GO:2000024: regulation of leaf development7.60E-03
133GO:0000373: Group II intron splicing7.60E-03
134GO:0009638: phototropism8.55E-03
135GO:0035999: tetrahydrofolate interconversion8.55E-03
136GO:0042761: very long-chain fatty acid biosynthetic process8.55E-03
137GO:2000280: regulation of root development8.55E-03
138GO:1900865: chloroplast RNA modification8.55E-03
139GO:0006349: regulation of gene expression by genetic imprinting8.55E-03
140GO:0010048: vernalization response9.53E-03
141GO:0006535: cysteine biosynthetic process from serine9.53E-03
142GO:0030422: production of siRNA involved in RNA interference9.53E-03
143GO:0007166: cell surface receptor signaling pathway1.05E-02
144GO:0009089: lysine biosynthetic process via diaminopimelate1.06E-02
145GO:0008380: RNA splicing1.11E-02
146GO:0008361: regulation of cell size1.16E-02
147GO:0006790: sulfur compound metabolic process1.16E-02
148GO:0015706: nitrate transport1.16E-02
149GO:0010582: floral meristem determinacy1.16E-02
150GO:0009785: blue light signaling pathway1.27E-02
151GO:0010143: cutin biosynthetic process1.38E-02
152GO:0006541: glutamine metabolic process1.38E-02
153GO:0010020: chloroplast fission1.38E-02
154GO:0046854: phosphatidylinositol phosphorylation1.50E-02
155GO:0010167: response to nitrate1.50E-02
156GO:0090351: seedling development1.50E-02
157GO:0042538: hyperosmotic salinity response1.55E-02
158GO:0006071: glycerol metabolic process1.62E-02
159GO:0006833: water transport1.62E-02
160GO:0005992: trehalose biosynthetic process1.75E-02
161GO:0019344: cysteine biosynthetic process1.75E-02
162GO:0009863: salicylic acid mediated signaling pathway1.75E-02
163GO:0010187: negative regulation of seed germination1.75E-02
164GO:2000377: regulation of reactive oxygen species metabolic process1.75E-02
165GO:0006825: copper ion transport1.87E-02
166GO:0051302: regulation of cell division1.87E-02
167GO:0006418: tRNA aminoacylation for protein translation1.87E-02
168GO:0080167: response to karrikin2.02E-02
169GO:0010227: floral organ abscission2.27E-02
170GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.27E-02
171GO:0071215: cellular response to abscisic acid stimulus2.27E-02
172GO:0016567: protein ubiquitination2.35E-02
173GO:0006284: base-excision repair2.41E-02
174GO:0009733: response to auxin2.50E-02
175GO:0070417: cellular response to cold2.55E-02
176GO:0042631: cellular response to water deprivation2.70E-02
177GO:0000226: microtubule cytoskeleton organization2.70E-02
178GO:0010501: RNA secondary structure unwinding2.70E-02
179GO:0010087: phloem or xylem histogenesis2.70E-02
180GO:0006342: chromatin silencing2.85E-02
181GO:0009960: endosperm development2.85E-02
182GO:0009958: positive gravitropism2.85E-02
183GO:0009646: response to absence of light3.00E-02
184GO:0048544: recognition of pollen3.00E-02
185GO:0007018: microtubule-based movement3.00E-02
186GO:0009058: biosynthetic process3.14E-02
187GO:0009851: auxin biosynthetic process3.15E-02
188GO:0048825: cotyledon development3.15E-02
189GO:0080156: mitochondrial mRNA modification3.31E-02
190GO:0071554: cell wall organization or biogenesis3.31E-02
191GO:0009793: embryo development ending in seed dormancy3.37E-02
192GO:0032502: developmental process3.47E-02
193GO:0009630: gravitropism3.47E-02
194GO:0009790: embryo development3.47E-02
195GO:0010583: response to cyclopentenone3.47E-02
196GO:0031047: gene silencing by RNA3.47E-02
197GO:0010090: trichome morphogenesis3.63E-02
198GO:0009828: plant-type cell wall loosening3.79E-02
199GO:0071805: potassium ion transmembrane transport3.96E-02
200GO:0007267: cell-cell signaling3.96E-02
201GO:0051607: defense response to virus4.13E-02
202GO:0001666: response to hypoxia4.30E-02
203GO:0009816: defense response to bacterium, incompatible interaction4.47E-02
RankGO TermAdjusted P value
1GO:0070009: serine-type aminopeptidase activity0.00E+00
2GO:0052834: inositol monophosphate phosphatase activity0.00E+00
3GO:0042834: peptidoglycan binding0.00E+00
4GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
5GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
6GO:0004401: histidinol-phosphatase activity0.00E+00
7GO:0003727: single-stranded RNA binding2.57E-04
8GO:0004674: protein serine/threonine kinase activity3.15E-04
9GO:0010347: L-galactose-1-phosphate phosphatase activity3.29E-04
10GO:0004016: adenylate cyclase activity3.29E-04
11GO:0004400: histidinol-phosphate transaminase activity3.29E-04
12GO:0008836: diaminopimelate decarboxylase activity3.29E-04
13GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity3.29E-04
14GO:0004156: dihydropteroate synthase activity3.29E-04
15GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity3.29E-04
16GO:0004008: copper-exporting ATPase activity3.29E-04
17GO:0016274: protein-arginine N-methyltransferase activity3.29E-04
18GO:0004071: aspartate-ammonia ligase activity3.29E-04
19GO:0004821: histidine-tRNA ligase activity3.29E-04
20GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity3.29E-04
21GO:0004830: tryptophan-tRNA ligase activity3.29E-04
22GO:0009672: auxin:proton symporter activity6.05E-04
23GO:0004519: endonuclease activity6.43E-04
24GO:0052832: inositol monophosphate 3-phosphatase activity7.18E-04
25GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity7.18E-04
26GO:0008934: inositol monophosphate 1-phosphatase activity7.18E-04
27GO:0052833: inositol monophosphate 4-phosphatase activity7.18E-04
28GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity7.18E-04
29GO:0009884: cytokinin receptor activity7.18E-04
30GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity7.18E-04
31GO:0009982: pseudouridine synthase activity1.05E-03
32GO:0010329: auxin efflux transmembrane transporter activity1.05E-03
33GO:0052722: fatty acid in-chain hydroxylase activity1.16E-03
34GO:0017150: tRNA dihydrouridine synthase activity1.16E-03
35GO:0045548: phenylalanine ammonia-lyase activity1.16E-03
36GO:0042781: 3'-tRNA processing endoribonuclease activity1.16E-03
37GO:0005034: osmosensor activity1.16E-03
38GO:0001872: (1->3)-beta-D-glucan binding1.67E-03
39GO:0035197: siRNA binding1.67E-03
40GO:0016301: kinase activity1.95E-03
41GO:0033612: receptor serine/threonine kinase binding1.97E-03
42GO:0004845: uracil phosphoribosyltransferase activity2.24E-03
43GO:0005253: anion channel activity2.24E-03
44GO:0005524: ATP binding2.86E-03
45GO:0008725: DNA-3-methyladenine glycosylase activity2.87E-03
46GO:0004372: glycine hydroxymethyltransferase activity2.87E-03
47GO:0016773: phosphotransferase activity, alcohol group as acceptor2.87E-03
48GO:0003723: RNA binding3.46E-03
49GO:0008519: ammonium transmembrane transporter activity3.54E-03
50GO:0005247: voltage-gated chloride channel activity3.54E-03
51GO:2001070: starch binding3.54E-03
52GO:1990714: hydroxyproline O-galactosyltransferase activity3.54E-03
53GO:0019901: protein kinase binding3.72E-03
54GO:0004124: cysteine synthase activity4.26E-03
55GO:0008195: phosphatidate phosphatase activity4.26E-03
56GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.26E-03
57GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.26E-03
58GO:0004849: uridine kinase activity4.26E-03
59GO:0019900: kinase binding4.26E-03
60GO:0000156: phosphorelay response regulator activity4.54E-03
61GO:0004672: protein kinase activity5.01E-03
62GO:0005375: copper ion transmembrane transporter activity6.71E-03
63GO:0008173: RNA methyltransferase activity6.71E-03
64GO:0004871: signal transducer activity6.85E-03
65GO:0008889: glycerophosphodiester phosphodiesterase activity7.60E-03
66GO:0000989: transcription factor activity, transcription factor binding7.60E-03
67GO:0004675: transmembrane receptor protein serine/threonine kinase activity8.08E-03
68GO:0008017: microtubule binding9.37E-03
69GO:0004673: protein histidine kinase activity9.53E-03
70GO:0004805: trehalose-phosphatase activity9.53E-03
71GO:0005089: Rho guanyl-nucleotide exchange factor activity1.06E-02
72GO:0004521: endoribonuclease activity1.16E-02
73GO:0031072: heat shock protein binding1.27E-02
74GO:0000155: phosphorelay sensor kinase activity1.27E-02
75GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.27E-02
76GO:0004022: alcohol dehydrogenase (NAD) activity1.27E-02
77GO:0043621: protein self-association1.34E-02
78GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.38E-02
79GO:0003777: microtubule motor activity1.85E-02
80GO:0043424: protein histidine kinase binding1.87E-02
81GO:0005345: purine nucleobase transmembrane transporter activity1.87E-02
82GO:0015079: potassium ion transmembrane transporter activity1.87E-02
83GO:0008408: 3'-5' exonuclease activity2.00E-02
84GO:0008514: organic anion transmembrane transporter activity2.41E-02
85GO:0005215: transporter activity2.44E-02
86GO:0004812: aminoacyl-tRNA ligase activity2.55E-02
87GO:0018024: histone-lysine N-methyltransferase activity2.55E-02
88GO:0005199: structural constituent of cell wall2.85E-02
89GO:0004527: exonuclease activity2.85E-02
90GO:0019843: rRNA binding2.98E-02
91GO:0030170: pyridoxal phosphate binding3.30E-02
92GO:0016759: cellulose synthase activity3.79E-02
93GO:0016413: O-acetyltransferase activity4.13E-02
94GO:0004004: ATP-dependent RNA helicase activity4.82E-02
95GO:0030247: polysaccharide binding4.82E-02
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Gene type



Gene DE type