Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G16590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0097164: ammonium ion metabolic process0.00E+00
2GO:0070455: positive regulation of heme biosynthetic process0.00E+00
3GO:0045184: establishment of protein localization0.00E+00
4GO:0007172: signal complex assembly0.00E+00
5GO:0015843: methylammonium transport0.00E+00
6GO:0031222: arabinan catabolic process0.00E+00
7GO:0070979: protein K11-linked ubiquitination0.00E+00
8GO:0061157: mRNA destabilization0.00E+00
9GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
10GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
11GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
12GO:0010068: protoderm histogenesis0.00E+00
13GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
14GO:1903224: regulation of endodermal cell differentiation0.00E+00
15GO:1901698: response to nitrogen compound0.00E+00
16GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
17GO:0007638: mechanosensory behavior0.00E+00
18GO:0010480: microsporocyte differentiation0.00E+00
19GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.55E-08
20GO:0046620: regulation of organ growth9.47E-07
21GO:0009734: auxin-activated signaling pathway7.66E-06
22GO:0009733: response to auxin8.29E-06
23GO:0006468: protein phosphorylation2.61E-05
24GO:0030154: cell differentiation3.22E-05
25GO:0040008: regulation of growth7.28E-05
26GO:0000373: Group II intron splicing8.55E-05
27GO:0009926: auxin polar transport2.07E-04
28GO:0009767: photosynthetic electron transport chain2.57E-04
29GO:0009934: regulation of meristem structural organization3.05E-04
30GO:0000160: phosphorelay signal transduction system6.11E-04
31GO:0046520: sphingoid biosynthetic process6.13E-04
32GO:0006264: mitochondrial DNA replication6.13E-04
33GO:0035987: endodermal cell differentiation6.13E-04
34GO:0043609: regulation of carbon utilization6.13E-04
35GO:0033259: plastid DNA replication6.13E-04
36GO:0006436: tryptophanyl-tRNA aminoacylation6.13E-04
37GO:0000066: mitochondrial ornithine transport6.13E-04
38GO:0051013: microtubule severing6.13E-04
39GO:0042659: regulation of cell fate specification6.13E-04
40GO:0090558: plant epidermis development6.13E-04
41GO:0048437: floral organ development6.95E-04
42GO:0016310: phosphorylation7.69E-04
43GO:0006002: fructose 6-phosphate metabolic process1.05E-03
44GO:0006783: heme biosynthetic process1.26E-03
45GO:0001736: establishment of planar polarity1.32E-03
46GO:0009786: regulation of asymmetric cell division1.32E-03
47GO:0080175: phragmoplast microtubule organization1.32E-03
48GO:0031648: protein destabilization1.32E-03
49GO:0048439: flower morphogenesis1.32E-03
50GO:0071258: cellular response to gravity1.32E-03
51GO:0006529: asparagine biosynthetic process1.32E-03
52GO:2000123: positive regulation of stomatal complex development1.32E-03
53GO:0010254: nectary development1.32E-03
54GO:0070981: L-asparagine biosynthetic process1.32E-03
55GO:0031537: regulation of anthocyanin metabolic process1.32E-03
56GO:0010569: regulation of double-strand break repair via homologous recombination1.32E-03
57GO:0071497: cellular response to freezing1.32E-03
58GO:0010434: bract formation1.32E-03
59GO:0031425: chloroplast RNA processing1.48E-03
60GO:0009638: phototropism1.48E-03
61GO:0032502: developmental process1.63E-03
62GO:0048829: root cap development1.73E-03
63GO:0009736: cytokinin-activated signaling pathway1.89E-03
64GO:0048229: gametophyte development2.01E-03
65GO:0016050: vesicle organization2.17E-03
66GO:0071705: nitrogen compound transport2.17E-03
67GO:0009954: proximal/distal pattern formation2.17E-03
68GO:0031022: nuclear migration along microfilament2.17E-03
69GO:0051127: positive regulation of actin nucleation2.17E-03
70GO:0090708: specification of plant organ axis polarity2.17E-03
71GO:0019419: sulfate reduction2.17E-03
72GO:0031145: anaphase-promoting complex-dependent catabolic process2.17E-03
73GO:0006000: fructose metabolic process2.17E-03
74GO:0051604: protein maturation2.17E-03
75GO:0010582: floral meristem determinacy2.30E-03
76GO:0007166: cell surface receptor signaling pathway2.34E-03
77GO:0010075: regulation of meristem growth2.62E-03
78GO:0043572: plastid fission3.15E-03
79GO:0031048: chromatin silencing by small RNA3.15E-03
80GO:0009067: aspartate family amino acid biosynthetic process3.15E-03
81GO:1902476: chloride transmembrane transport3.15E-03
82GO:0051513: regulation of monopolar cell growth3.15E-03
83GO:0007231: osmosensory signaling pathway3.15E-03
84GO:0030071: regulation of mitotic metaphase/anaphase transition3.15E-03
85GO:0051639: actin filament network formation3.15E-03
86GO:0009800: cinnamic acid biosynthetic process3.15E-03
87GO:0033014: tetrapyrrole biosynthetic process3.15E-03
88GO:0044211: CTP salvage3.15E-03
89GO:0048645: animal organ formation3.15E-03
90GO:0019048: modulation by virus of host morphology or physiology3.15E-03
91GO:0015696: ammonium transport3.15E-03
92GO:0046739: transport of virus in multicellular host3.15E-03
93GO:2000904: regulation of starch metabolic process3.15E-03
94GO:0090351: seedling development3.32E-03
95GO:0009742: brassinosteroid mediated signaling pathway3.57E-03
96GO:0005992: trehalose biosynthetic process4.12E-03
97GO:0019344: cysteine biosynthetic process4.12E-03
98GO:0009944: polarity specification of adaxial/abaxial axis4.12E-03
99GO:0051567: histone H3-K9 methylation4.25E-03
100GO:0009165: nucleotide biosynthetic process4.25E-03
101GO:0044206: UMP salvage4.25E-03
102GO:1901141: regulation of lignin biosynthetic process4.25E-03
103GO:0051764: actin crosslink formation4.25E-03
104GO:0071249: cellular response to nitrate4.25E-03
105GO:0030104: water homeostasis4.25E-03
106GO:0033500: carbohydrate homeostasis4.25E-03
107GO:0072488: ammonium transmembrane transport4.25E-03
108GO:2000038: regulation of stomatal complex development4.25E-03
109GO:0046656: folic acid biosynthetic process4.25E-03
110GO:0022622: root system development4.25E-03
111GO:0044205: 'de novo' UMP biosynthetic process4.25E-03
112GO:0016998: cell wall macromolecule catabolic process5.00E-03
113GO:0006306: DNA methylation5.00E-03
114GO:0009723: response to ethylene5.18E-03
115GO:0006544: glycine metabolic process5.46E-03
116GO:0071368: cellular response to cytokinin stimulus5.46E-03
117GO:1902183: regulation of shoot apical meristem development5.46E-03
118GO:0016123: xanthophyll biosynthetic process5.46E-03
119GO:0051225: spindle assembly5.46E-03
120GO:0010438: cellular response to sulfur starvation5.46E-03
121GO:0010158: abaxial cell fate specification5.46E-03
122GO:0048578: positive regulation of long-day photoperiodism, flowering5.46E-03
123GO:0032876: negative regulation of DNA endoreduplication5.46E-03
124GO:0010375: stomatal complex patterning5.46E-03
125GO:0009904: chloroplast accumulation movement5.46E-03
126GO:0080167: response to karrikin5.85E-03
127GO:0010082: regulation of root meristem growth5.99E-03
128GO:0006206: pyrimidine nucleobase metabolic process6.78E-03
129GO:0006563: L-serine metabolic process6.78E-03
130GO:0018258: protein O-linked glycosylation via hydroxyproline6.78E-03
131GO:0009228: thiamine biosynthetic process6.78E-03
132GO:0010405: arabinogalactan protein metabolic process6.78E-03
133GO:0009959: negative gravitropism6.78E-03
134GO:0006655: phosphatidylglycerol biosynthetic process6.78E-03
135GO:0006139: nucleobase-containing compound metabolic process6.78E-03
136GO:0042793: transcription from plastid promoter6.78E-03
137GO:0045962: positive regulation of development, heterochronic6.78E-03
138GO:0016458: gene silencing6.78E-03
139GO:0006559: L-phenylalanine catabolic process6.78E-03
140GO:0048653: anther development7.65E-03
141GO:0009903: chloroplast avoidance movement8.20E-03
142GO:0030488: tRNA methylation8.20E-03
143GO:0080113: regulation of seed growth8.20E-03
144GO:0009088: threonine biosynthetic process8.20E-03
145GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity8.20E-03
146GO:2000067: regulation of root morphogenesis8.20E-03
147GO:0080036: regulation of cytokinin-activated signaling pathway8.20E-03
148GO:0046654: tetrahydrofolate biosynthetic process8.20E-03
149GO:0006342: chromatin silencing8.25E-03
150GO:0009958: positive gravitropism8.25E-03
151GO:0007018: microtubule-based movement8.88E-03
152GO:0009396: folic acid-containing compound biosynthetic process9.71E-03
153GO:0032880: regulation of protein localization9.71E-03
154GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway9.71E-03
155GO:0010161: red light signaling pathway9.71E-03
156GO:0006955: immune response9.71E-03
157GO:0006821: chloride transport9.71E-03
158GO:0010050: vegetative phase change9.71E-03
159GO:0030162: regulation of proteolysis1.13E-02
160GO:0042255: ribosome assembly1.13E-02
161GO:0055075: potassium ion homeostasis1.13E-02
162GO:0009751: response to salicylic acid1.13E-02
163GO:0010439: regulation of glucosinolate biosynthetic process1.13E-02
164GO:0009850: auxin metabolic process1.13E-02
165GO:0009787: regulation of abscisic acid-activated signaling pathway1.13E-02
166GO:0009704: de-etiolation1.13E-02
167GO:0032875: regulation of DNA endoreduplication1.13E-02
168GO:0048367: shoot system development1.20E-02
169GO:0010252: auxin homeostasis1.24E-02
170GO:0010497: plasmodesmata-mediated intercellular transport1.30E-02
171GO:0007389: pattern specification process1.30E-02
172GO:0010099: regulation of photomorphogenesis1.30E-02
173GO:0009827: plant-type cell wall modification1.30E-02
174GO:0010100: negative regulation of photomorphogenesis1.30E-02
175GO:0006526: arginine biosynthetic process1.30E-02
176GO:0009740: gibberellic acid mediated signaling pathway1.35E-02
177GO:0051607: defense response to virus1.40E-02
178GO:0009658: chloroplast organization1.46E-02
179GO:0000902: cell morphogenesis1.48E-02
180GO:0051865: protein autoubiquitination1.48E-02
181GO:0009051: pentose-phosphate shunt, oxidative branch1.48E-02
182GO:2000024: regulation of leaf development1.48E-02
183GO:0042761: very long-chain fatty acid biosynthetic process1.67E-02
184GO:2000280: regulation of root development1.67E-02
185GO:0035999: tetrahydrofolate interconversion1.67E-02
186GO:0010380: regulation of chlorophyll biosynthetic process1.67E-02
187GO:0010411: xyloglucan metabolic process1.75E-02
188GO:0015995: chlorophyll biosynthetic process1.75E-02
189GO:0030422: production of siRNA involved in RNA interference1.86E-02
190GO:0009641: shade avoidance1.86E-02
191GO:0009299: mRNA transcription1.86E-02
192GO:0006535: cysteine biosynthetic process from serine1.86E-02
193GO:0000103: sulfate assimilation1.86E-02
194GO:0006357: regulation of transcription from RNA polymerase II promoter1.87E-02
195GO:0010311: lateral root formation2.04E-02
196GO:0048765: root hair cell differentiation2.06E-02
197GO:0010015: root morphogenesis2.06E-02
198GO:0009089: lysine biosynthetic process via diaminopimelate2.06E-02
199GO:0006816: calcium ion transport2.06E-02
200GO:0009773: photosynthetic electron transport in photosystem I2.06E-02
201GO:0009682: induced systemic resistance2.06E-02
202GO:0016024: CDP-diacylglycerol biosynthetic process2.27E-02
203GO:0045037: protein import into chloroplast stroma2.27E-02
204GO:0015706: nitrate transport2.27E-02
205GO:0006865: amino acid transport2.36E-02
206GO:0009785: blue light signaling pathway2.49E-02
207GO:0030036: actin cytoskeleton organization2.49E-02
208GO:0009725: response to hormone2.49E-02
209GO:2000012: regulation of auxin polar transport2.49E-02
210GO:0010628: positive regulation of gene expression2.49E-02
211GO:0006006: glucose metabolic process2.49E-02
212GO:0009735: response to cytokinin2.64E-02
213GO:0010207: photosystem II assembly2.71E-02
214GO:0010143: cutin biosynthetic process2.71E-02
215GO:0006541: glutamine metabolic process2.71E-02
216GO:0010020: chloroplast fission2.71E-02
217GO:0006839: mitochondrial transport2.81E-02
218GO:0006897: endocytosis2.93E-02
219GO:0010030: positive regulation of seed germination2.94E-02
220GO:0070588: calcium ion transmembrane transport2.94E-02
221GO:0009825: multidimensional cell growth2.94E-02
222GO:0010167: response to nitrate2.94E-02
223GO:0009640: photomorphogenesis3.18E-02
224GO:0006071: glycerol metabolic process3.18E-02
225GO:0006833: water transport3.18E-02
226GO:0042546: cell wall biogenesis3.31E-02
227GO:0009739: response to gibberellin3.35E-02
228GO:0010187: negative regulation of seed germination3.42E-02
229GO:0051017: actin filament bundle assembly3.42E-02
230GO:0043622: cortical microtubule organization3.67E-02
231GO:0006825: copper ion transport3.67E-02
232GO:0051302: regulation of cell division3.67E-02
233GO:0006418: tRNA aminoacylation for protein translation3.67E-02
234GO:0006855: drug transmembrane transport3.71E-02
235GO:0048364: root development3.82E-02
236GO:0003333: amino acid transmembrane transport3.93E-02
237GO:0009753: response to jasmonic acid3.97E-02
238GO:0031348: negative regulation of defense response4.19E-02
239GO:0006730: one-carbon metabolic process4.19E-02
240GO:2000022: regulation of jasmonic acid mediated signaling pathway4.19E-02
241GO:0009686: gibberellin biosynthetic process4.46E-02
242GO:0009625: response to insect4.46E-02
243GO:0010227: floral organ abscission4.46E-02
244GO:0010091: trichome branching4.73E-02
245GO:0006417: regulation of translation4.73E-02
246GO:0006284: base-excision repair4.73E-02
247GO:0009826: unidimensional cell growth4.77E-02
RankGO TermAdjusted P value
1GO:0004056: argininosuccinate lyase activity0.00E+00
2GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
3GO:0019136: deoxynucleoside kinase activity0.00E+00
4GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
5GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
6GO:0004674: protein serine/threonine kinase activity1.32E-05
7GO:0016301: kinase activity9.62E-05
8GO:0043621: protein self-association2.42E-04
9GO:0000156: phosphorelay response regulator activity2.50E-04
10GO:0016773: phosphotransferase activity, alcohol group as acceptor2.93E-04
11GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.78E-04
12GO:0005524: ATP binding4.80E-04
13GO:0033612: receptor serine/threonine kinase binding6.09E-04
14GO:0004830: tryptophan-tRNA ligase activity6.13E-04
15GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.13E-04
16GO:0010313: phytochrome binding6.13E-04
17GO:0000170: sphingosine hydroxylase activity6.13E-04
18GO:0050139: nicotinate-N-glucosyltransferase activity6.13E-04
19GO:0008568: microtubule-severing ATPase activity6.13E-04
20GO:0042834: peptidoglycan binding6.13E-04
21GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity6.13E-04
22GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.13E-04
23GO:0004156: dihydropteroate synthase activity6.13E-04
24GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity6.13E-04
25GO:0005290: L-histidine transmembrane transporter activity6.13E-04
26GO:0004008: copper-exporting ATPase activity6.13E-04
27GO:0004071: aspartate-ammonia ligase activity6.13E-04
28GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.13E-04
29GO:0003727: single-stranded RNA binding8.52E-04
30GO:0004563: beta-N-acetylhexosaminidase activity1.32E-03
31GO:0050017: L-3-cyanoalanine synthase activity1.32E-03
32GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.32E-03
33GO:0043425: bHLH transcription factor binding1.32E-03
34GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.32E-03
35GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.32E-03
36GO:0009973: adenylyl-sulfate reductase activity1.32E-03
37GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.32E-03
38GO:0042284: sphingolipid delta-4 desaturase activity1.32E-03
39GO:0000064: L-ornithine transmembrane transporter activity1.32E-03
40GO:0015929: hexosaminidase activity1.32E-03
41GO:0004805: trehalose-phosphatase activity1.73E-03
42GO:0005089: Rho guanyl-nucleotide exchange factor activity2.01E-03
43GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity2.17E-03
44GO:0070180: large ribosomal subunit rRNA binding2.17E-03
45GO:0070330: aromatase activity2.17E-03
46GO:0052722: fatty acid in-chain hydroxylase activity2.17E-03
47GO:0017150: tRNA dihydrouridine synthase activity2.17E-03
48GO:0045548: phenylalanine ammonia-lyase activity2.17E-03
49GO:0004672: protein kinase activity2.53E-03
50GO:0035197: siRNA binding3.15E-03
51GO:0001872: (1->3)-beta-D-glucan binding3.15E-03
52GO:0015189: L-lysine transmembrane transporter activity3.15E-03
53GO:0004072: aspartate kinase activity3.15E-03
54GO:0017172: cysteine dioxygenase activity3.15E-03
55GO:0015181: arginine transmembrane transporter activity3.15E-03
56GO:0005515: protein binding3.23E-03
57GO:0046556: alpha-L-arabinofuranosidase activity4.25E-03
58GO:0043495: protein anchor4.25E-03
59GO:0004845: uracil phosphoribosyltransferase activity4.25E-03
60GO:0010011: auxin binding4.25E-03
61GO:0004345: glucose-6-phosphate dehydrogenase activity4.25E-03
62GO:0008409: 5'-3' exonuclease activity4.25E-03
63GO:0010328: auxin influx transmembrane transporter activity4.25E-03
64GO:0005253: anion channel activity4.25E-03
65GO:0019199: transmembrane receptor protein kinase activity4.25E-03
66GO:0008725: DNA-3-methyladenine glycosylase activity5.46E-03
67GO:0004372: glycine hydroxymethyltransferase activity5.46E-03
68GO:0018685: alkane 1-monooxygenase activity5.46E-03
69GO:0008519: ammonium transmembrane transporter activity6.78E-03
70GO:0005247: voltage-gated chloride channel activity6.78E-03
71GO:2001070: starch binding6.78E-03
72GO:0004605: phosphatidate cytidylyltransferase activity6.78E-03
73GO:1990714: hydroxyproline O-galactosyltransferase activity6.78E-03
74GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting8.02E-03
75GO:0004124: cysteine synthase activity8.20E-03
76GO:0008195: phosphatidate phosphatase activity8.20E-03
77GO:0004849: uridine kinase activity8.20E-03
78GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity8.20E-03
79GO:0010181: FMN binding8.88E-03
80GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding9.67E-03
81GO:0003872: 6-phosphofructokinase activity9.71E-03
82GO:0016762: xyloglucan:xyloglucosyl transferase activity1.02E-02
83GO:0051015: actin filament binding1.17E-02
84GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity1.30E-02
85GO:0005375: copper ion transmembrane transporter activity1.30E-02
86GO:0008173: RNA methyltransferase activity1.30E-02
87GO:0008889: glycerophosphodiester phosphodiesterase activity1.48E-02
88GO:0044212: transcription regulatory region DNA binding1.67E-02
89GO:0009672: auxin:proton symporter activity1.67E-02
90GO:0016798: hydrolase activity, acting on glycosyl bonds1.75E-02
91GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.85E-02
92GO:0004713: protein tyrosine kinase activity1.86E-02
93GO:0015238: drug transmembrane transporter activity2.04E-02
94GO:0008794: arsenate reductase (glutaredoxin) activity2.06E-02
95GO:0004252: serine-type endopeptidase activity2.22E-02
96GO:0004521: endoribonuclease activity2.27E-02
97GO:0010329: auxin efflux transmembrane transporter activity2.49E-02
98GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.49E-02
99GO:0004089: carbonate dehydratase activity2.49E-02
100GO:0031072: heat shock protein binding2.49E-02
101GO:0005262: calcium channel activity2.49E-02
102GO:0004022: alcohol dehydrogenase (NAD) activity2.49E-02
103GO:0008083: growth factor activity2.71E-02
104GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.71E-02
105GO:0042803: protein homodimerization activity2.83E-02
106GO:0004871: signal transducer activity2.83E-02
107GO:0016491: oxidoreductase activity2.94E-02
108GO:0008017: microtubule binding3.09E-02
109GO:0003887: DNA-directed DNA polymerase activity3.18E-02
110GO:0051537: 2 iron, 2 sulfur cluster binding3.44E-02
111GO:0005345: purine nucleobase transmembrane transporter activity3.67E-02
112GO:0019706: protein-cysteine S-palmitoyltransferase activity3.93E-02
113GO:0035251: UDP-glucosyltransferase activity3.93E-02
114GO:0004176: ATP-dependent peptidase activity3.93E-02
115GO:0008514: organic anion transmembrane transporter activity4.73E-02
116GO:0003777: microtubule motor activity4.73E-02
117GO:0015171: amino acid transmembrane transporter activity4.73E-02
118GO:0005215: transporter activity4.91E-02
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Gene type



Gene DE type