Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G16000

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015843: methylammonium transport0.00E+00
2GO:0031222: arabinan catabolic process0.00E+00
3GO:0070979: protein K11-linked ubiquitination0.00E+00
4GO:1905421: regulation of plant organ morphogenesis0.00E+00
5GO:0043488: regulation of mRNA stability0.00E+00
6GO:0061157: mRNA destabilization0.00E+00
7GO:0030155: regulation of cell adhesion0.00E+00
8GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
9GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
10GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
11GO:0031116: positive regulation of microtubule polymerization0.00E+00
12GO:0010068: protoderm histogenesis0.00E+00
13GO:0007638: mechanosensory behavior0.00E+00
14GO:0097164: ammonium ion metabolic process0.00E+00
15GO:0046620: regulation of organ growth4.15E-07
16GO:0005992: trehalose biosynthetic process1.74E-05
17GO:0040008: regulation of growth2.50E-05
18GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.36E-05
19GO:0000373: Group II intron splicing4.88E-05
20GO:0051513: regulation of monopolar cell growth7.46E-05
21GO:0009734: auxin-activated signaling pathway2.68E-04
22GO:0000066: mitochondrial ornithine transport4.81E-04
23GO:0005991: trehalose metabolic process4.81E-04
24GO:0070509: calcium ion import4.81E-04
25GO:0010480: microsporocyte differentiation4.81E-04
26GO:0006436: tryptophanyl-tRNA aminoacylation4.81E-04
27GO:0048528: post-embryonic root development4.86E-04
28GO:0070413: trehalose metabolism in response to stress6.06E-04
29GO:0009926: auxin polar transport6.88E-04
30GO:0009646: response to absence of light7.94E-04
31GO:0006468: protein phosphorylation9.57E-04
32GO:0032502: developmental process1.03E-03
33GO:2000123: positive regulation of stomatal complex development1.04E-03
34GO:0009638: phototropism1.04E-03
35GO:0070981: L-asparagine biosynthetic process1.04E-03
36GO:0009786: regulation of asymmetric cell division1.04E-03
37GO:0006529: asparagine biosynthetic process1.04E-03
38GO:0009733: response to auxin1.23E-03
39GO:0009089: lysine biosynthetic process via diaminopimelate1.40E-03
40GO:0048281: inflorescence morphogenesis1.69E-03
41GO:0051127: positive regulation of actin nucleation1.69E-03
42GO:0031145: anaphase-promoting complex-dependent catabolic process1.69E-03
43GO:0051604: protein maturation1.69E-03
44GO:0001578: microtubule bundle formation1.69E-03
45GO:0016050: vesicle organization1.69E-03
46GO:0009767: photosynthetic electron transport chain1.82E-03
47GO:0009742: brassinosteroid mediated signaling pathway2.03E-03
48GO:0000160: phosphorelay signal transduction system2.25E-03
49GO:0090351: seedling development2.30E-03
50GO:0070588: calcium ion transmembrane transport2.30E-03
51GO:0009067: aspartate family amino acid biosynthetic process2.45E-03
52GO:0007231: osmosensory signaling pathway2.45E-03
53GO:0030071: regulation of mitotic metaphase/anaphase transition2.45E-03
54GO:0051639: actin filament network formation2.45E-03
55GO:0044211: CTP salvage2.45E-03
56GO:0019048: modulation by virus of host morphology or physiology2.45E-03
57GO:0009226: nucleotide-sugar biosynthetic process2.45E-03
58GO:0048645: animal organ formation2.45E-03
59GO:0015696: ammonium transport2.45E-03
60GO:0046739: transport of virus in multicellular host2.45E-03
61GO:0032981: mitochondrial respiratory chain complex I assembly2.45E-03
62GO:2000904: regulation of starch metabolic process2.45E-03
63GO:0031048: chromatin silencing by small RNA2.45E-03
64GO:0010148: transpiration2.45E-03
65GO:0043572: plastid fission2.45E-03
66GO:0009944: polarity specification of adaxial/abaxial axis2.85E-03
67GO:0051764: actin crosslink formation3.30E-03
68GO:0051322: anaphase3.30E-03
69GO:0072488: ammonium transmembrane transport3.30E-03
70GO:0033500: carbohydrate homeostasis3.30E-03
71GO:2000038: regulation of stomatal complex development3.30E-03
72GO:0006552: leucine catabolic process3.30E-03
73GO:0051567: histone H3-K9 methylation3.30E-03
74GO:0007020: microtubule nucleation3.30E-03
75GO:0044205: 'de novo' UMP biosynthetic process3.30E-03
76GO:0044206: UMP salvage3.30E-03
77GO:0009165: nucleotide biosynthetic process3.30E-03
78GO:0006839: mitochondrial transport3.38E-03
79GO:0016310: phosphorylation3.71E-03
80GO:1902183: regulation of shoot apical meristem development4.23E-03
81GO:0016123: xanthophyll biosynthetic process4.23E-03
82GO:0010158: abaxial cell fate specification4.23E-03
83GO:0032876: negative regulation of DNA endoreduplication4.23E-03
84GO:0010375: stomatal complex patterning4.23E-03
85GO:0016131: brassinosteroid metabolic process4.23E-03
86GO:0046785: microtubule polymerization4.23E-03
87GO:0006544: glycine metabolic process4.23E-03
88GO:0006855: drug transmembrane transport4.82E-03
89GO:0009959: negative gravitropism5.24E-03
90GO:0006655: phosphatidylglycerol biosynthetic process5.24E-03
91GO:0006139: nucleobase-containing compound metabolic process5.24E-03
92GO:0045962: positive regulation of development, heterochronic5.24E-03
93GO:0006206: pyrimidine nucleobase metabolic process5.24E-03
94GO:0018258: protein O-linked glycosylation via hydroxyproline5.24E-03
95GO:0016458: gene silencing5.24E-03
96GO:0009228: thiamine biosynthetic process5.24E-03
97GO:0006563: L-serine metabolic process5.24E-03
98GO:0010405: arabinogalactan protein metabolic process5.24E-03
99GO:0007166: cell surface receptor signaling pathway5.25E-03
100GO:0009736: cytokinin-activated signaling pathway5.79E-03
101GO:0080086: stamen filament development6.32E-03
102GO:0030488: tRNA methylation6.32E-03
103GO:0009088: threonine biosynthetic process6.32E-03
104GO:0010161: red light signaling pathway7.48E-03
105GO:0009610: response to symbiotic fungus7.48E-03
106GO:0070370: cellular heat acclimation7.48E-03
107GO:0010050: vegetative phase change7.48E-03
108GO:0048437: floral organ development7.48E-03
109GO:0010444: guard mother cell differentiation7.48E-03
110GO:0022904: respiratory electron transport chain7.48E-03
111GO:0010103: stomatal complex morphogenesis7.48E-03
112GO:0009658: chloroplast organization8.33E-03
113GO:0009740: gibberellic acid mediated signaling pathway8.42E-03
114GO:0010252: auxin homeostasis8.54E-03
115GO:0006402: mRNA catabolic process8.71E-03
116GO:0009787: regulation of abscisic acid-activated signaling pathway8.71E-03
117GO:0009850: auxin metabolic process8.71E-03
118GO:0042255: ribosome assembly8.71E-03
119GO:0009704: de-etiolation8.71E-03
120GO:0032875: regulation of DNA endoreduplication8.71E-03
121GO:0006353: DNA-templated transcription, termination8.71E-03
122GO:0010099: regulation of photomorphogenesis1.00E-02
123GO:0006002: fructose 6-phosphate metabolic process1.00E-02
124GO:0001558: regulation of cell growth1.00E-02
125GO:0009827: plant-type cell wall modification1.00E-02
126GO:0010497: plasmodesmata-mediated intercellular transport1.00E-02
127GO:0010100: negative regulation of photomorphogenesis1.00E-02
128GO:0006526: arginine biosynthetic process1.00E-02
129GO:0007389: pattern specification process1.00E-02
130GO:0009051: pentose-phosphate shunt, oxidative branch1.14E-02
131GO:2000024: regulation of leaf development1.14E-02
132GO:0006783: heme biosynthetic process1.14E-02
133GO:0000902: cell morphogenesis1.14E-02
134GO:0080167: response to karrikin1.16E-02
135GO:0010411: xyloglucan metabolic process1.20E-02
136GO:0071577: zinc II ion transmembrane transport1.28E-02
137GO:0035999: tetrahydrofolate interconversion1.28E-02
138GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.28E-02
139GO:0031425: chloroplast RNA processing1.28E-02
140GO:0009058: biosynthetic process1.30E-02
141GO:0009641: shade avoidance1.43E-02
142GO:0009299: mRNA transcription1.43E-02
143GO:0006535: cysteine biosynthetic process from serine1.43E-02
144GO:0030422: production of siRNA involved in RNA interference1.43E-02
145GO:0048829: root cap development1.43E-02
146GO:0010015: root morphogenesis1.58E-02
147GO:0006816: calcium ion transport1.58E-02
148GO:0009773: photosynthetic electron transport in photosystem I1.58E-02
149GO:0006415: translational termination1.58E-02
150GO:0048229: gametophyte development1.58E-02
151GO:0016024: CDP-diacylglycerol biosynthetic process1.74E-02
152GO:0010582: floral meristem determinacy1.74E-02
153GO:0007623: circadian rhythm1.83E-02
154GO:0010075: regulation of meristem growth1.91E-02
155GO:0009725: response to hormone1.91E-02
156GO:0010628: positive regulation of gene expression1.91E-02
157GO:0009785: blue light signaling pathway1.91E-02
158GO:0006006: glucose metabolic process1.91E-02
159GO:0030036: actin cytoskeleton organization1.91E-02
160GO:0050826: response to freezing1.91E-02
161GO:0006897: endocytosis2.02E-02
162GO:0071555: cell wall organization2.06E-02
163GO:0009934: regulation of meristem structural organization2.08E-02
164GO:0010207: photosystem II assembly2.08E-02
165GO:0006541: glutamine metabolic process2.08E-02
166GO:0010020: chloroplast fission2.08E-02
167GO:0008283: cell proliferation2.19E-02
168GO:0042546: cell wall biogenesis2.28E-02
169GO:0030154: cell differentiation2.42E-02
170GO:0006071: glycerol metabolic process2.44E-02
171GO:0009965: leaf morphogenesis2.47E-02
172GO:0019344: cysteine biosynthetic process2.62E-02
173GO:0051017: actin filament bundle assembly2.62E-02
174GO:0010187: negative regulation of seed germination2.62E-02
175GO:0006825: copper ion transport2.82E-02
176GO:0051302: regulation of cell division2.82E-02
177GO:0006418: tRNA aminoacylation for protein translation2.82E-02
178GO:0043622: cortical microtubule organization2.82E-02
179GO:0006306: DNA methylation3.01E-02
180GO:0051603: proteolysis involved in cellular protein catabolic process3.06E-02
181GO:0007275: multicellular organism development3.11E-02
182GO:0006730: one-carbon metabolic process3.21E-02
183GO:0031348: negative regulation of defense response3.21E-02
184GO:0006417: regulation of translation3.28E-02
185GO:0010082: regulation of root meristem growth3.42E-02
186GO:0009686: gibberellin biosynthetic process3.42E-02
187GO:0001944: vasculature development3.42E-02
188GO:0048367: shoot system development3.61E-02
189GO:0048316: seed development3.61E-02
190GO:0006284: base-excision repair3.63E-02
191GO:0048653: anther development4.06E-02
192GO:0042335: cuticle development4.06E-02
193GO:0000271: polysaccharide biosynthetic process4.06E-02
194GO:0008033: tRNA processing4.06E-02
195GO:0010087: phloem or xylem histogenesis4.06E-02
196GO:0009735: response to cytokinin4.22E-02
197GO:0006342: chromatin silencing4.28E-02
198GO:0009741: response to brassinosteroid4.28E-02
199GO:0045489: pectin biosynthetic process4.28E-02
200GO:0010182: sugar mediated signaling pathway4.28E-02
201GO:0046777: protein autophosphorylation4.48E-02
202GO:0048544: recognition of pollen4.51E-02
203GO:0007018: microtubule-based movement4.51E-02
204GO:0008654: phospholipid biosynthetic process4.74E-02
205GO:0016132: brassinosteroid biosynthetic process4.97E-02
206GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.97E-02
207GO:0071554: cell wall organization or biogenesis4.97E-02
208GO:0000302: response to reactive oxygen species4.97E-02
RankGO TermAdjusted P value
1GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
2GO:0019136: deoxynucleoside kinase activity0.00E+00
3GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
4GO:0048039: ubiquinone binding0.00E+00
5GO:0047661: amino-acid racemase activity0.00E+00
6GO:0004056: argininosuccinate lyase activity0.00E+00
7GO:0004805: trehalose-phosphatase activity8.25E-05
8GO:0019199: transmembrane receptor protein kinase activity1.30E-04
9GO:0004674: protein serine/threonine kinase activity4.02E-04
10GO:0050139: nicotinate-N-glucosyltransferase activity4.81E-04
11GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity4.81E-04
12GO:0005290: L-histidine transmembrane transporter activity4.81E-04
13GO:0004008: copper-exporting ATPase activity4.81E-04
14GO:0004071: aspartate-ammonia ligase activity4.81E-04
15GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.81E-04
16GO:0010313: phytochrome binding4.81E-04
17GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.81E-04
18GO:0004830: tryptophan-tRNA ligase activity4.81E-04
19GO:0010285: L,L-diaminopimelate aminotransferase activity4.81E-04
20GO:0004675: transmembrane receptor protein serine/threonine kinase activity8.55E-04
21GO:0043425: bHLH transcription factor binding1.04E-03
22GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.04E-03
23GO:0000064: L-ornithine transmembrane transporter activity1.04E-03
24GO:0015929: hexosaminidase activity1.04E-03
25GO:0004563: beta-N-acetylhexosaminidase activity1.04E-03
26GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.04E-03
27GO:0050017: L-3-cyanoalanine synthase activity1.04E-03
28GO:0000156: phosphorelay response regulator activity1.11E-03
29GO:0016301: kinase activity1.15E-03
30GO:0070180: large ribosomal subunit rRNA binding1.69E-03
31GO:0070330: aromatase activity1.69E-03
32GO:0017150: tRNA dihydrouridine synthase activity1.69E-03
33GO:0005262: calcium channel activity1.82E-03
34GO:0015238: drug transmembrane transporter activity2.25E-03
35GO:0001872: (1->3)-beta-D-glucan binding2.45E-03
36GO:0015189: L-lysine transmembrane transporter activity2.45E-03
37GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.45E-03
38GO:0004072: aspartate kinase activity2.45E-03
39GO:0015181: arginine transmembrane transporter activity2.45E-03
40GO:0017172: cysteine dioxygenase activity2.45E-03
41GO:0035197: siRNA binding2.45E-03
42GO:0004672: protein kinase activity2.46E-03
43GO:0004845: uracil phosphoribosyltransferase activity3.30E-03
44GO:0004345: glucose-6-phosphate dehydrogenase activity3.30E-03
45GO:0042277: peptide binding3.30E-03
46GO:0046556: alpha-L-arabinofuranosidase activity3.30E-03
47GO:0008725: DNA-3-methyladenine glycosylase activity4.23E-03
48GO:0004372: glycine hydroxymethyltransferase activity4.23E-03
49GO:0016773: phosphotransferase activity, alcohol group as acceptor4.23E-03
50GO:0018685: alkane 1-monooxygenase activity4.23E-03
51GO:0005524: ATP binding4.36E-03
52GO:0043621: protein self-association4.37E-03
53GO:0003727: single-stranded RNA binding4.50E-03
54GO:0004605: phosphatidate cytidylyltransferase activity5.24E-03
55GO:1990714: hydroxyproline O-galactosyltransferase activity5.24E-03
56GO:0008519: ammonium transmembrane transporter activity5.24E-03
57GO:0004124: cysteine synthase activity6.32E-03
58GO:0008195: phosphatidate phosphatase activity6.32E-03
59GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.32E-03
60GO:0004849: uridine kinase activity6.32E-03
61GO:0003730: mRNA 3'-UTR binding6.32E-03
62GO:0004656: procollagen-proline 4-dioxygenase activity6.32E-03
63GO:0016762: xyloglucan:xyloglucosyl transferase activity7.03E-03
64GO:0003872: 6-phosphofructokinase activity7.48E-03
65GO:0019899: enzyme binding7.48E-03
66GO:0016791: phosphatase activity8.54E-03
67GO:0016597: amino acid binding9.64E-03
68GO:0005375: copper ion transmembrane transporter activity1.00E-02
69GO:0003747: translation release factor activity1.14E-02
70GO:0008889: glycerophosphodiester phosphodiesterase activity1.14E-02
71GO:0016798: hydrolase activity, acting on glycosyl bonds1.20E-02
72GO:0009672: auxin:proton symporter activity1.28E-02
73GO:0004252: serine-type endopeptidase activity1.39E-02
74GO:0030170: pyridoxal phosphate binding1.39E-02
75GO:0046983: protein dimerization activity1.40E-02
76GO:0004713: protein tyrosine kinase activity1.43E-02
77GO:0005089: Rho guanyl-nucleotide exchange factor activity1.58E-02
78GO:0008327: methyl-CpG binding1.58E-02
79GO:0004871: signal transducer activity1.63E-02
80GO:0042803: protein homodimerization activity1.63E-02
81GO:0015297: antiporter activity1.72E-02
82GO:0004521: endoribonuclease activity1.74E-02
83GO:0031072: heat shock protein binding1.91E-02
84GO:0004022: alcohol dehydrogenase (NAD) activity1.91E-02
85GO:0010329: auxin efflux transmembrane transporter activity1.91E-02
86GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.91E-02
87GO:0004089: carbonate dehydratase activity1.91E-02
88GO:0004185: serine-type carboxypeptidase activity2.19E-02
89GO:0031418: L-ascorbic acid binding2.62E-02
90GO:0005385: zinc ion transmembrane transporter activity2.62E-02
91GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.62E-02
92GO:0030246: carbohydrate binding2.71E-02
93GO:0005345: purine nucleobase transmembrane transporter activity2.82E-02
94GO:0008324: cation transmembrane transporter activity2.82E-02
95GO:0035251: UDP-glucosyltransferase activity3.01E-02
96GO:0004176: ATP-dependent peptidase activity3.01E-02
97GO:0033612: receptor serine/threonine kinase binding3.01E-02
98GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.21E-02
99GO:0008514: organic anion transmembrane transporter activity3.63E-02
100GO:0004812: aminoacyl-tRNA ligase activity3.84E-02
101GO:0004650: polygalacturonase activity3.84E-02
102GO:0008536: Ran GTPase binding4.28E-02
103GO:0050662: coenzyme binding4.51E-02
104GO:0019901: protein kinase binding4.74E-02
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Gene type



Gene DE type