Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G13770

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046471: phosphatidylglycerol metabolic process0.00E+00
2GO:0034337: RNA folding0.00E+00
3GO:0006982: response to lipid hydroperoxide0.00E+00
4GO:0010335: response to non-ionic osmotic stress0.00E+00
5GO:1902171: regulation of tocopherol cyclase activity0.00E+00
6GO:1901918: negative regulation of exoribonuclease activity0.00E+00
7GO:0016553: base conversion or substitution editing0.00E+00
8GO:0033494: ferulate metabolic process0.00E+00
9GO:0015670: carbon dioxide transport0.00E+00
10GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
11GO:0005996: monosaccharide metabolic process0.00E+00
12GO:0010207: photosystem II assembly1.39E-12
13GO:0015995: chlorophyll biosynthetic process1.71E-10
14GO:0009658: chloroplast organization4.05E-06
15GO:0055114: oxidation-reduction process5.59E-06
16GO:0006094: gluconeogenesis1.04E-05
17GO:0006810: transport1.63E-05
18GO:0015979: photosynthesis9.47E-05
19GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly9.71E-05
20GO:0009773: photosynthetic electron transport in photosystem I1.45E-04
21GO:0015994: chlorophyll metabolic process1.67E-04
22GO:0010600: regulation of auxin biosynthetic process1.67E-04
23GO:0010143: cutin biosynthetic process2.53E-04
24GO:0006636: unsaturated fatty acid biosynthetic process3.45E-04
25GO:0042549: photosystem II stabilization3.57E-04
26GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.76E-04
27GO:0071277: cellular response to calcium ion5.60E-04
28GO:0046167: glycerol-3-phosphate biosynthetic process5.60E-04
29GO:0043007: maintenance of rDNA5.60E-04
30GO:1902458: positive regulation of stomatal opening5.60E-04
31GO:0019510: S-adenosylhomocysteine catabolic process5.60E-04
32GO:0051180: vitamin transport5.60E-04
33GO:0010362: negative regulation of anion channel activity by blue light5.60E-04
34GO:0015969: guanosine tetraphosphate metabolic process5.60E-04
35GO:0030974: thiamine pyrophosphate transport5.60E-04
36GO:0046467: membrane lipid biosynthetic process5.60E-04
37GO:0043489: RNA stabilization5.60E-04
38GO:1904966: positive regulation of vitamin E biosynthetic process5.60E-04
39GO:0000481: maturation of 5S rRNA5.60E-04
40GO:0015801: aromatic amino acid transport5.60E-04
41GO:1904964: positive regulation of phytol biosynthetic process5.60E-04
42GO:0043953: protein transport by the Tat complex5.60E-04
43GO:0010426: DNA methylation on cytosine within a CHH sequence5.60E-04
44GO:0065002: intracellular protein transmembrane transport5.60E-04
45GO:0043087: regulation of GTPase activity5.60E-04
46GO:0071461: cellular response to redox state5.60E-04
47GO:0019722: calcium-mediated signaling7.18E-04
48GO:0016559: peroxisome fission7.58E-04
49GO:0010928: regulation of auxin mediated signaling pathway7.58E-04
50GO:0009704: de-etiolation7.58E-04
51GO:0032544: plastid translation9.22E-04
52GO:0006520: cellular amino acid metabolic process9.65E-04
53GO:0009821: alkaloid biosynthetic process1.10E-03
54GO:0006098: pentose-phosphate shunt1.10E-03
55GO:0006783: heme biosynthetic process1.10E-03
56GO:0006754: ATP biosynthetic process1.10E-03
57GO:0008616: queuosine biosynthetic process1.20E-03
58GO:0010155: regulation of proton transport1.20E-03
59GO:0006729: tetrahydrobiopterin biosynthetic process1.20E-03
60GO:1903426: regulation of reactive oxygen species biosynthetic process1.20E-03
61GO:0015790: UDP-xylose transport1.20E-03
62GO:0030388: fructose 1,6-bisphosphate metabolic process1.20E-03
63GO:0035304: regulation of protein dephosphorylation1.20E-03
64GO:0080005: photosystem stoichiometry adjustment1.20E-03
65GO:0033353: S-adenosylmethionine cycle1.20E-03
66GO:0042819: vitamin B6 biosynthetic process1.20E-03
67GO:0010541: acropetal auxin transport1.20E-03
68GO:1902326: positive regulation of chlorophyll biosynthetic process1.20E-03
69GO:0015893: drug transport1.20E-03
70GO:0006650: glycerophospholipid metabolic process1.20E-03
71GO:0010205: photoinhibition1.30E-03
72GO:0006779: porphyrin-containing compound biosynthetic process1.30E-03
73GO:0044550: secondary metabolite biosynthetic process1.45E-03
74GO:0007267: cell-cell signaling1.74E-03
75GO:0019684: photosynthesis, light reaction1.75E-03
76GO:0018119: peptidyl-cysteine S-nitrosylation1.75E-03
77GO:0006081: cellular aldehyde metabolic process1.98E-03
78GO:0046621: negative regulation of organ growth1.98E-03
79GO:0006000: fructose metabolic process1.98E-03
80GO:0046168: glycerol-3-phosphate catabolic process1.98E-03
81GO:0044375: regulation of peroxisome size1.98E-03
82GO:0010160: formation of animal organ boundary1.98E-03
83GO:0016024: CDP-diacylglycerol biosynthetic process2.01E-03
84GO:0010027: thylakoid membrane organization2.02E-03
85GO:0032259: methylation2.46E-03
86GO:0019253: reductive pentose-phosphate cycle2.58E-03
87GO:0071484: cellular response to light intensity2.87E-03
88GO:0009152: purine ribonucleotide biosynthetic process2.87E-03
89GO:0046653: tetrahydrofolate metabolic process2.87E-03
90GO:0033014: tetrapyrrole biosynthetic process2.87E-03
91GO:0008615: pyridoxine biosynthetic process2.87E-03
92GO:0010731: protein glutathionylation2.87E-03
93GO:0043481: anthocyanin accumulation in tissues in response to UV light2.87E-03
94GO:0006072: glycerol-3-phosphate metabolic process2.87E-03
95GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.87E-03
96GO:2001141: regulation of RNA biosynthetic process2.87E-03
97GO:0042823: pyridoxal phosphate biosynthetic process2.87E-03
98GO:0006833: water transport3.23E-03
99GO:0015689: molybdate ion transport3.87E-03
100GO:0045727: positive regulation of translation3.87E-03
101GO:0006546: glycine catabolic process3.87E-03
102GO:0009058: biosynthetic process4.05E-03
103GO:0031408: oxylipin biosynthetic process4.36E-03
104GO:0006631: fatty acid metabolic process4.79E-03
105GO:0043097: pyrimidine nucleoside salvage4.97E-03
106GO:0009107: lipoate biosynthetic process4.97E-03
107GO:0016123: xanthophyll biosynthetic process4.97E-03
108GO:0000304: response to singlet oxygen4.97E-03
109GO:0006465: signal peptide processing4.97E-03
110GO:0006564: L-serine biosynthetic process4.97E-03
111GO:0009904: chloroplast accumulation movement4.97E-03
112GO:0045038: protein import into chloroplast thylakoid membrane4.97E-03
113GO:0007623: circadian rhythm6.11E-03
114GO:0006655: phosphatidylglycerol biosynthetic process6.16E-03
115GO:0060918: auxin transport6.16E-03
116GO:0009920: cell plate formation involved in plant-type cell wall biogenesis6.16E-03
117GO:0006206: pyrimidine nucleobase metabolic process6.16E-03
118GO:0034220: ion transmembrane transport6.66E-03
119GO:0009735: response to cytokinin6.97E-03
120GO:0010182: sugar mediated signaling pathway7.19E-03
121GO:0010019: chloroplast-nucleus signaling pathway7.44E-03
122GO:0045926: negative regulation of growth7.44E-03
123GO:0017148: negative regulation of translation7.44E-03
124GO:0009903: chloroplast avoidance movement7.44E-03
125GO:0010189: vitamin E biosynthetic process7.44E-03
126GO:1901259: chloroplast rRNA processing7.44E-03
127GO:0000054: ribosomal subunit export from nucleus7.44E-03
128GO:0009585: red, far-red light phototransduction7.80E-03
129GO:0019252: starch biosynthetic process8.30E-03
130GO:0010161: red light signaling pathway8.81E-03
131GO:0009772: photosynthetic electron transport in photosystem II8.81E-03
132GO:1900056: negative regulation of leaf senescence8.81E-03
133GO:1900057: positive regulation of leaf senescence8.81E-03
134GO:0048437: floral organ development8.81E-03
135GO:0006400: tRNA modification8.81E-03
136GO:0050829: defense response to Gram-negative bacterium8.81E-03
137GO:0032502: developmental process9.51E-03
138GO:0006096: glycolytic process9.67E-03
139GO:0009231: riboflavin biosynthetic process1.03E-02
140GO:0007155: cell adhesion1.03E-02
141GO:0009690: cytokinin metabolic process1.03E-02
142GO:0032508: DNA duplex unwinding1.03E-02
143GO:2000070: regulation of response to water deprivation1.03E-02
144GO:0050821: protein stabilization1.03E-02
145GO:0042255: ribosome assembly1.03E-02
146GO:0006353: DNA-templated transcription, termination1.03E-02
147GO:0009932: cell tip growth1.18E-02
148GO:0006002: fructose 6-phosphate metabolic process1.18E-02
149GO:0071482: cellular response to light stimulus1.18E-02
150GO:0015996: chlorophyll catabolic process1.18E-02
151GO:0006526: arginine biosynthetic process1.18E-02
152GO:0007186: G-protein coupled receptor signaling pathway1.18E-02
153GO:0009657: plastid organization1.18E-02
154GO:0006396: RNA processing1.27E-02
155GO:0051865: protein autoubiquitination1.34E-02
156GO:0090305: nucleic acid phosphodiester bond hydrolysis1.34E-02
157GO:0010206: photosystem II repair1.34E-02
158GO:0090333: regulation of stomatal closure1.34E-02
159GO:0009638: phototropism1.51E-02
160GO:0010380: regulation of chlorophyll biosynthetic process1.51E-02
161GO:0010411: xyloglucan metabolic process1.53E-02
162GO:0009641: shade avoidance1.69E-02
163GO:0006535: cysteine biosynthetic process from serine1.69E-02
164GO:0018298: protein-chromophore linkage1.69E-02
165GO:0006782: protoporphyrinogen IX biosynthetic process1.69E-02
166GO:0009688: abscisic acid biosynthetic process1.69E-02
167GO:0043069: negative regulation of programmed cell death1.69E-02
168GO:0043085: positive regulation of catalytic activity1.87E-02
169GO:0006352: DNA-templated transcription, initiation1.87E-02
170GO:0000272: polysaccharide catabolic process1.87E-02
171GO:0016485: protein processing1.87E-02
172GO:0006415: translational termination1.87E-02
173GO:0007568: aging1.96E-02
174GO:0008361: regulation of cell size2.06E-02
175GO:0045037: protein import into chloroplast stroma2.06E-02
176GO:0009637: response to blue light2.15E-02
177GO:0016051: carbohydrate biosynthetic process2.15E-02
178GO:0006633: fatty acid biosynthetic process2.18E-02
179GO:0018107: peptidyl-threonine phosphorylation2.25E-02
180GO:0009718: anthocyanin-containing compound biosynthetic process2.25E-02
181GO:0009725: response to hormone2.25E-02
182GO:0009767: photosynthetic electron transport chain2.25E-02
183GO:0005986: sucrose biosynthetic process2.25E-02
184GO:0009785: blue light signaling pathway2.25E-02
185GO:0010540: basipetal auxin transport2.46E-02
186GO:0009266: response to temperature stimulus2.46E-02
187GO:0034605: cellular response to heat2.46E-02
188GO:0010020: chloroplast fission2.46E-02
189GO:0010223: secondary shoot formation2.46E-02
190GO:0007031: peroxisome organization2.67E-02
191GO:0042343: indole glucosinolate metabolic process2.67E-02
192GO:0010114: response to red light2.77E-02
193GO:0009833: plant-type primary cell wall biogenesis2.88E-02
194GO:0019762: glucosinolate catabolic process2.88E-02
195GO:0010025: wax biosynthetic process2.88E-02
196GO:0042546: cell wall biogenesis2.89E-02
197GO:0019344: cysteine biosynthetic process3.10E-02
198GO:0009636: response to toxic substance3.12E-02
199GO:0071555: cell wall organization3.19E-02
200GO:0042538: hyperosmotic salinity response3.48E-02
201GO:0048511: rhythmic process3.56E-02
202GO:0098542: defense response to other organism3.56E-02
203GO:0061077: chaperone-mediated protein folding3.56E-02
204GO:0006306: DNA methylation3.56E-02
205GO:0003333: amino acid transmembrane transport3.56E-02
206GO:0055085: transmembrane transport3.63E-02
207GO:0006364: rRNA processing3.73E-02
208GO:0006730: one-carbon metabolic process3.80E-02
209GO:0019748: secondary metabolic process3.80E-02
210GO:0016226: iron-sulfur cluster assembly3.80E-02
211GO:0010017: red or far-red light signaling pathway3.80E-02
212GO:0030433: ubiquitin-dependent ERAD pathway3.80E-02
213GO:0080092: regulation of pollen tube growth3.80E-02
214GO:0006857: oligopeptide transport4.00E-02
215GO:0009693: ethylene biosynthetic process4.04E-02
216GO:0006817: phosphate ion transport4.29E-02
217GO:0048443: stamen development4.29E-02
218GO:0009306: protein secretion4.29E-02
219GO:0009561: megagametogenesis4.29E-02
220GO:0043086: negative regulation of catalytic activity4.41E-02
221GO:0006606: protein import into nucleus4.79E-02
222GO:0042631: cellular response to water deprivation4.79E-02
RankGO TermAdjusted P value
1GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
2GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
3GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
4GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
5GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
6GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity0.00E+00
7GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
8GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
9GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
10GO:0045550: geranylgeranyl reductase activity0.00E+00
11GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
12GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
13GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
14GO:0008974: phosphoribulokinase activity0.00E+00
15GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
16GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
17GO:0004332: fructose-bisphosphate aldolase activity9.47E-06
18GO:0018708: thiol S-methyltransferase activity1.37E-05
19GO:0016851: magnesium chelatase activity9.71E-05
20GO:0016491: oxidoreductase activity1.50E-04
21GO:0048038: quinone binding1.58E-04
22GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.67E-04
23GO:0031072: heat shock protein binding2.14E-04
24GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.57E-04
25GO:0042802: identical protein binding5.41E-04
26GO:0031957: very long-chain fatty acid-CoA ligase activity5.60E-04
27GO:0035671: enone reductase activity5.60E-04
28GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity5.60E-04
29GO:0046906: tetrapyrrole binding5.60E-04
30GO:0090422: thiamine pyrophosphate transporter activity5.60E-04
31GO:0004013: adenosylhomocysteinase activity5.60E-04
32GO:0080132: fatty acid alpha-hydroxylase activity5.60E-04
33GO:0010242: oxygen evolving activity5.60E-04
34GO:0004325: ferrochelatase activity5.60E-04
35GO:0004328: formamidase activity5.60E-04
36GO:0010313: phytochrome binding5.60E-04
37GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity5.60E-04
38GO:0019899: enzyme binding6.09E-04
39GO:0019843: rRNA binding8.24E-04
40GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water9.22E-04
41GO:0071949: FAD binding1.10E-03
42GO:0047746: chlorophyllase activity1.20E-03
43GO:0042389: omega-3 fatty acid desaturase activity1.20E-03
44GO:0010297: heteropolysaccharide binding1.20E-03
45GO:0009977: proton motive force dependent protein transmembrane transporter activity1.20E-03
46GO:0004617: phosphoglycerate dehydrogenase activity1.20E-03
47GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity1.20E-03
48GO:0004047: aminomethyltransferase activity1.20E-03
49GO:0015173: aromatic amino acid transmembrane transporter activity1.20E-03
50GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.20E-03
51GO:0008479: queuine tRNA-ribosyltransferase activity1.20E-03
52GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity1.20E-03
53GO:0019172: glyoxalase III activity1.20E-03
54GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity1.20E-03
55GO:0043024: ribosomal small subunit binding1.20E-03
56GO:0008728: GTP diphosphokinase activity1.20E-03
57GO:0005464: UDP-xylose transmembrane transporter activity1.20E-03
58GO:0050017: L-3-cyanoalanine synthase activity1.20E-03
59GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity1.20E-03
60GO:0008883: glutamyl-tRNA reductase activity1.20E-03
61GO:0016844: strictosidine synthase activity1.30E-03
62GO:0051287: NAD binding1.30E-03
63GO:0030234: enzyme regulator activity1.52E-03
64GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity1.98E-03
65GO:0008864: formyltetrahydrofolate deformylase activity1.98E-03
66GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.98E-03
67GO:0010277: chlorophyllide a oxygenase [overall] activity1.98E-03
68GO:0005504: fatty acid binding1.98E-03
69GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.98E-03
70GO:0004373: glycogen (starch) synthase activity1.98E-03
71GO:0050734: hydroxycinnamoyltransferase activity1.98E-03
72GO:0016992: lipoate synthase activity1.98E-03
73GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.98E-03
74GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.98E-03
75GO:0003935: GTP cyclohydrolase II activity1.98E-03
76GO:0004565: beta-galactosidase activity2.29E-03
77GO:0008266: poly(U) RNA binding2.58E-03
78GO:0048027: mRNA 5'-UTR binding2.87E-03
79GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.87E-03
80GO:0009882: blue light photoreceptor activity2.87E-03
81GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.87E-03
82GO:0008168: methyltransferase activity2.94E-03
83GO:0005528: FK506 binding3.59E-03
84GO:0001053: plastid sigma factor activity3.87E-03
85GO:0045430: chalcone isomerase activity3.87E-03
86GO:0009011: starch synthase activity3.87E-03
87GO:0016987: sigma factor activity3.87E-03
88GO:0015098: molybdate ion transmembrane transporter activity3.87E-03
89GO:0043495: protein anchor3.87E-03
90GO:0005275: amine transmembrane transporter activity4.97E-03
91GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen4.97E-03
92GO:0003727: single-stranded RNA binding5.68E-03
93GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity6.16E-03
94GO:0004029: aldehyde dehydrogenase (NAD) activity6.16E-03
95GO:0004462: lactoylglutathione lyase activity6.16E-03
96GO:0035673: oligopeptide transmembrane transporter activity6.16E-03
97GO:0042578: phosphoric ester hydrolase activity6.16E-03
98GO:0016887: ATPase activity6.37E-03
99GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.48E-03
100GO:0008080: N-acetyltransferase activity7.19E-03
101GO:0004124: cysteine synthase activity7.44E-03
102GO:0004849: uridine kinase activity7.44E-03
103GO:0102391: decanoate--CoA ligase activity7.44E-03
104GO:0003886: DNA (cytosine-5-)-methyltransferase activity7.44E-03
105GO:0004467: long-chain fatty acid-CoA ligase activity8.81E-03
106GO:0016762: xyloglucan:xyloglucosyl transferase activity8.89E-03
107GO:0004518: nuclease activity9.51E-03
108GO:0003729: mRNA binding1.17E-02
109GO:0008135: translation factor activity, RNA binding1.18E-02
110GO:0005506: iron ion binding1.20E-02
111GO:0051082: unfolded protein binding1.23E-02
112GO:0015250: water channel activity1.29E-02
113GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism1.34E-02
114GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.51E-02
115GO:0016798: hydrolase activity, acting on glycosyl bonds1.53E-02
116GO:0005215: transporter activity1.54E-02
117GO:0005089: Rho guanyl-nucleotide exchange factor activity1.87E-02
118GO:0015198: oligopeptide transporter activity2.06E-02
119GO:0003746: translation elongation factor activity2.15E-02
120GO:0005525: GTP binding2.16E-02
121GO:0000155: phosphorelay sensor kinase activity2.25E-02
122GO:0046910: pectinesterase inhibitor activity2.25E-02
123GO:0005315: inorganic phosphate transmembrane transporter activity2.25E-02
124GO:0010329: auxin efflux transmembrane transporter activity2.25E-02
125GO:0004871: signal transducer activity2.31E-02
126GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.41E-02
127GO:0031624: ubiquitin conjugating enzyme binding2.46E-02
128GO:0004364: glutathione transferase activity2.66E-02
129GO:0005515: protein binding2.85E-02
130GO:0051537: 2 iron, 2 sulfur cluster binding3.00E-02
131GO:0035091: phosphatidylinositol binding3.00E-02
132GO:0051536: iron-sulfur cluster binding3.10E-02
133GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.80E-02
134GO:0003690: double-stranded DNA binding3.86E-02
135GO:0016760: cellulose synthase (UDP-forming) activity4.04E-02
136GO:0022891: substrate-specific transmembrane transporter activity4.04E-02
137GO:0016788: hydrolase activity, acting on ester bonds4.32E-02
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Gene type



Gene DE type