Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G13140

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0034337: RNA folding0.00E+00
2GO:1902171: regulation of tocopherol cyclase activity0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
5GO:0015670: carbon dioxide transport0.00E+00
6GO:0046471: phosphatidylglycerol metabolic process0.00E+00
7GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
8GO:0008298: intracellular mRNA localization0.00E+00
9GO:0015995: chlorophyll biosynthetic process3.56E-10
10GO:0010207: photosystem II assembly6.50E-08
11GO:0055114: oxidation-reduction process2.00E-06
12GO:0006094: gluconeogenesis8.34E-05
13GO:0042549: photosystem II stabilization1.82E-04
14GO:0019722: calcium-mediated signaling3.11E-04
15GO:0046167: glycerol-3-phosphate biosynthetic process3.63E-04
16GO:0043007: maintenance of rDNA3.63E-04
17GO:1902458: positive regulation of stomatal opening3.63E-04
18GO:0010362: negative regulation of anion channel activity by blue light3.63E-04
19GO:0015969: guanosine tetraphosphate metabolic process3.63E-04
20GO:0051180: vitamin transport3.63E-04
21GO:0030974: thiamine pyrophosphate transport3.63E-04
22GO:0046467: membrane lipid biosynthetic process3.63E-04
23GO:0010426: DNA methylation on cytosine within a CHH sequence3.63E-04
24GO:1904966: positive regulation of vitamin E biosynthetic process3.63E-04
25GO:0071277: cellular response to calcium ion3.63E-04
26GO:0000481: maturation of 5S rRNA3.63E-04
27GO:0015801: aromatic amino acid transport3.63E-04
28GO:1904964: positive regulation of phytol biosynthetic process3.63E-04
29GO:0043087: regulation of GTPase activity3.63E-04
30GO:0071461: cellular response to redox state3.63E-04
31GO:0016559: peroxisome fission4.01E-04
32GO:0009704: de-etiolation4.01E-04
33GO:0015979: photosynthesis4.30E-04
34GO:0006098: pentose-phosphate shunt5.89E-04
35GO:0007267: cell-cell signaling7.68E-04
36GO:0010155: regulation of proton transport7.89E-04
37GO:1903426: regulation of reactive oxygen species biosynthetic process7.89E-04
38GO:0030388: fructose 1,6-bisphosphate metabolic process7.89E-04
39GO:0035304: regulation of protein dephosphorylation7.89E-04
40GO:0080005: photosystem stoichiometry adjustment7.89E-04
41GO:1902326: positive regulation of chlorophyll biosynthetic process7.89E-04
42GO:0010541: acropetal auxin transport7.89E-04
43GO:0015893: drug transport7.89E-04
44GO:0006650: glycerophospholipid metabolic process7.89E-04
45GO:0016024: CDP-diacylglycerol biosynthetic process1.06E-03
46GO:0046621: negative regulation of organ growth1.28E-03
47GO:0006000: fructose metabolic process1.28E-03
48GO:0046168: glycerol-3-phosphate catabolic process1.28E-03
49GO:0010160: formation of animal organ boundary1.28E-03
50GO:0044375: regulation of peroxisome size1.28E-03
51GO:0010143: cutin biosynthetic process1.36E-03
52GO:0007568: aging1.48E-03
53GO:0044550: secondary metabolite biosynthetic process1.66E-03
54GO:0009637: response to blue light1.67E-03
55GO:0006833: water transport1.69E-03
56GO:0006636: unsaturated fatty acid biosynthetic process1.69E-03
57GO:0009152: purine ribonucleotide biosynthetic process1.84E-03
58GO:0046653: tetrahydrofolate metabolic process1.84E-03
59GO:0043481: anthocyanin accumulation in tissues in response to UV light1.84E-03
60GO:0033014: tetrapyrrole biosynthetic process1.84E-03
61GO:0006072: glycerol-3-phosphate metabolic process1.84E-03
62GO:2001141: regulation of RNA biosynthetic process1.84E-03
63GO:0006633: fatty acid biosynthetic process1.94E-03
64GO:0006631: fatty acid metabolic process2.08E-03
65GO:0015689: molybdate ion transport2.47E-03
66GO:0019464: glycine decarboxylation via glycine cleavage system2.47E-03
67GO:0010600: regulation of auxin biosynthetic process2.47E-03
68GO:0006546: glycine catabolic process2.47E-03
69GO:0009107: lipoate biosynthetic process3.16E-03
70GO:0006465: signal peptide processing3.16E-03
71GO:0000304: response to singlet oxygen3.16E-03
72GO:0006564: L-serine biosynthetic process3.16E-03
73GO:0009904: chloroplast accumulation movement3.16E-03
74GO:0045038: protein import into chloroplast thylakoid membrane3.16E-03
75GO:0034220: ion transmembrane transport3.46E-03
76GO:0006520: cellular amino acid metabolic process3.72E-03
77GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.91E-03
78GO:0006655: phosphatidylglycerol biosynthetic process3.91E-03
79GO:0060918: auxin transport3.91E-03
80GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.91E-03
81GO:0009228: thiamine biosynthetic process3.91E-03
82GO:0006014: D-ribose metabolic process3.91E-03
83GO:0006096: glycolytic process4.17E-03
84GO:0019252: starch biosynthetic process4.30E-03
85GO:0009658: chloroplast organization4.36E-03
86GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.71E-03
87GO:0045926: negative regulation of growth4.71E-03
88GO:1901259: chloroplast rRNA processing4.71E-03
89GO:0000054: ribosomal subunit export from nucleus4.71E-03
90GO:0009903: chloroplast avoidance movement4.71E-03
91GO:0010189: vitamin E biosynthetic process4.71E-03
92GO:0032502: developmental process4.91E-03
93GO:0010161: red light signaling pathway5.56E-03
94GO:0009395: phospholipid catabolic process5.56E-03
95GO:0048437: floral organ development5.56E-03
96GO:1900057: positive regulation of leaf senescence5.56E-03
97GO:0006400: tRNA modification5.56E-03
98GO:0007155: cell adhesion6.46E-03
99GO:0010928: regulation of auxin mediated signaling pathway6.46E-03
100GO:0009690: cytokinin metabolic process6.46E-03
101GO:0042255: ribosome assembly6.46E-03
102GO:0006353: DNA-templated transcription, termination6.46E-03
103GO:0032508: DNA duplex unwinding6.46E-03
104GO:2000070: regulation of response to water deprivation6.46E-03
105GO:0050821: protein stabilization6.46E-03
106GO:0009932: cell tip growth7.41E-03
107GO:0006002: fructose 6-phosphate metabolic process7.41E-03
108GO:0071482: cellular response to light stimulus7.41E-03
109GO:0015996: chlorophyll catabolic process7.41E-03
110GO:0007186: G-protein coupled receptor signaling pathway7.41E-03
111GO:0009657: plastid organization7.41E-03
112GO:0006526: arginine biosynthetic process7.41E-03
113GO:0010411: xyloglucan metabolic process7.84E-03
114GO:0009821: alkaloid biosynthetic process8.41E-03
115GO:0051865: protein autoubiquitination8.41E-03
116GO:0090305: nucleic acid phosphodiester bond hydrolysis8.41E-03
117GO:0090333: regulation of stomatal closure8.41E-03
118GO:0006783: heme biosynthetic process8.41E-03
119GO:0018298: protein-chromophore linkage8.69E-03
120GO:0010205: photoinhibition9.46E-03
121GO:0009638: phototropism9.46E-03
122GO:0006779: porphyrin-containing compound biosynthetic process9.46E-03
123GO:0006811: ion transport9.60E-03
124GO:0010218: response to far red light9.60E-03
125GO:0009641: shade avoidance1.05E-02
126GO:0009299: mRNA transcription1.05E-02
127GO:0043069: negative regulation of programmed cell death1.05E-02
128GO:0016051: carbohydrate biosynthetic process1.10E-02
129GO:0019684: photosynthesis, light reaction1.17E-02
130GO:0006352: DNA-templated transcription, initiation1.17E-02
131GO:0006415: translational termination1.17E-02
132GO:0055085: transmembrane transport1.18E-02
133GO:0008361: regulation of cell size1.29E-02
134GO:0045037: protein import into chloroplast stroma1.29E-02
135GO:0018107: peptidyl-threonine phosphorylation1.41E-02
136GO:0009718: anthocyanin-containing compound biosynthetic process1.41E-02
137GO:0009725: response to hormone1.41E-02
138GO:0009767: photosynthetic electron transport chain1.41E-02
139GO:0005986: sucrose biosynthetic process1.41E-02
140GO:0009785: blue light signaling pathway1.41E-02
141GO:0010114: response to red light1.43E-02
142GO:0042546: cell wall biogenesis1.49E-02
143GO:0010540: basipetal auxin transport1.53E-02
144GO:0009266: response to temperature stimulus1.53E-02
145GO:0034605: cellular response to heat1.53E-02
146GO:0010020: chloroplast fission1.53E-02
147GO:0019253: reductive pentose-phosphate cycle1.53E-02
148GO:0010223: secondary shoot formation1.53E-02
149GO:0007031: peroxisome organization1.66E-02
150GO:0042343: indole glucosinolate metabolic process1.66E-02
151GO:0010025: wax biosynthetic process1.80E-02
152GO:0006810: transport1.89E-02
153GO:0006857: oligopeptide transport2.07E-02
154GO:0046686: response to cadmium ion2.12E-02
155GO:0048511: rhythmic process2.22E-02
156GO:0098542: defense response to other organism2.22E-02
157GO:0010431: seed maturation2.22E-02
158GO:0006306: DNA methylation2.22E-02
159GO:0031408: oxylipin biosynthetic process2.22E-02
160GO:0016114: terpenoid biosynthetic process2.22E-02
161GO:0003333: amino acid transmembrane transport2.22E-02
162GO:0009735: response to cytokinin2.26E-02
163GO:0019748: secondary metabolic process2.37E-02
164GO:0010017: red or far-red light signaling pathway2.37E-02
165GO:0016226: iron-sulfur cluster assembly2.37E-02
166GO:0030433: ubiquitin-dependent ERAD pathway2.37E-02
167GO:0080092: regulation of pollen tube growth2.37E-02
168GO:0009416: response to light stimulus2.58E-02
169GO:0006817: phosphate ion transport2.67E-02
170GO:0048443: stamen development2.67E-02
171GO:0009306: protein secretion2.67E-02
172GO:0009742: brassinosteroid mediated signaling pathway2.91E-02
173GO:0042335: cuticle development2.99E-02
174GO:0009741: response to brassinosteroid3.16E-02
175GO:0009958: positive gravitropism3.16E-02
176GO:0010182: sugar mediated signaling pathway3.16E-02
177GO:0008654: phospholipid biosynthetic process3.49E-02
178GO:0009058: biosynthetic process3.62E-02
179GO:0032259: methylation3.73E-02
180GO:0007264: small GTPase mediated signal transduction3.84E-02
181GO:0009639: response to red or far red light4.20E-02
182GO:0006413: translational initiation4.41E-02
183GO:0007623: circadian rhythm4.73E-02
184GO:0010027: thylakoid membrane organization4.76E-02
185GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.95E-02
RankGO TermAdjusted P value
1GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
2GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
3GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity0.00E+00
4GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
5GO:0019144: ADP-sugar diphosphatase activity0.00E+00
6GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
7GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
8GO:0045550: geranylgeranyl reductase activity0.00E+00
9GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
10GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
11GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
12GO:0016491: oxidoreductase activity1.44E-06
13GO:0016851: magnesium chelatase activity4.58E-05
14GO:0004332: fructose-bisphosphate aldolase activity1.82E-04
15GO:0000293: ferric-chelate reductase activity1.82E-04
16GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.82E-04
17GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.63E-04
18GO:0090422: thiamine pyrophosphate transporter activity3.63E-04
19GO:0080042: ADP-glucose pyrophosphohydrolase activity3.63E-04
20GO:0080132: fatty acid alpha-hydroxylase activity3.63E-04
21GO:0010242: oxygen evolving activity3.63E-04
22GO:0004325: ferrochelatase activity3.63E-04
23GO:0031957: very long-chain fatty acid-CoA ligase activity3.63E-04
24GO:0004328: formamidase activity3.63E-04
25GO:0042802: identical protein binding6.99E-04
26GO:0042389: omega-3 fatty acid desaturase activity7.89E-04
27GO:0080041: ADP-ribose pyrophosphohydrolase activity7.89E-04
28GO:0004617: phosphoglycerate dehydrogenase activity7.89E-04
29GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity7.89E-04
30GO:0015173: aromatic amino acid transmembrane transporter activity7.89E-04
31GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.89E-04
32GO:0018708: thiol S-methyltransferase activity7.89E-04
33GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity7.89E-04
34GO:0043024: ribosomal small subunit binding7.89E-04
35GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity7.89E-04
36GO:0008728: GTP diphosphokinase activity7.89E-04
37GO:0004565: beta-galactosidase activity1.20E-03
38GO:0008864: formyltetrahydrofolate deformylase activity1.28E-03
39GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.28E-03
40GO:0010277: chlorophyllide a oxygenase [overall] activity1.28E-03
41GO:0005504: fatty acid binding1.28E-03
42GO:0016992: lipoate synthase activity1.28E-03
43GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.28E-03
44GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.28E-03
45GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.28E-03
46GO:0004375: glycine dehydrogenase (decarboxylating) activity1.84E-03
47GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.84E-03
48GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.84E-03
49GO:0009882: blue light photoreceptor activity1.84E-03
50GO:0005528: FK506 binding1.87E-03
51GO:0001053: plastid sigma factor activity2.47E-03
52GO:0016987: sigma factor activity2.47E-03
53GO:0045430: chalcone isomerase activity2.47E-03
54GO:0015098: molybdate ion transmembrane transporter activity2.47E-03
55GO:0043495: protein anchor2.47E-03
56GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.80E-03
57GO:0005506: iron ion binding2.88E-03
58GO:0051287: NAD binding2.94E-03
59GO:0003727: single-stranded RNA binding2.95E-03
60GO:0005275: amine transmembrane transporter activity3.16E-03
61GO:0035673: oligopeptide transmembrane transporter activity3.91E-03
62GO:0042578: phosphoric ester hydrolase activity3.91E-03
63GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.91E-03
64GO:0016762: xyloglucan:xyloglucosyl transferase activity4.60E-03
65GO:0102391: decanoate--CoA ligase activity4.71E-03
66GO:0004747: ribokinase activity4.71E-03
67GO:0003886: DNA (cytosine-5-)-methyltransferase activity4.71E-03
68GO:0019899: enzyme binding5.56E-03
69GO:0004467: long-chain fatty acid-CoA ligase activity5.56E-03
70GO:0008865: fructokinase activity6.46E-03
71GO:0015250: water channel activity6.65E-03
72GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.41E-03
73GO:0016798: hydrolase activity, acting on glycosyl bonds7.84E-03
74GO:0071949: FAD binding8.41E-03
75GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen8.94E-03
76GO:0016844: strictosidine synthase activity9.46E-03
77GO:0004743: pyruvate kinase activity9.46E-03
78GO:0030955: potassium ion binding9.46E-03
79GO:0030234: enzyme regulator activity1.05E-02
80GO:0005215: transporter activity1.10E-02
81GO:0003993: acid phosphatase activity1.16E-02
82GO:0005089: Rho guanyl-nucleotide exchange factor activity1.17E-02
83GO:0015198: oligopeptide transporter activity1.29E-02
84GO:0031072: heat shock protein binding1.41E-02
85GO:0000155: phosphorelay sensor kinase activity1.41E-02
86GO:0010329: auxin efflux transmembrane transporter activity1.41E-02
87GO:0005315: inorganic phosphate transmembrane transporter activity1.41E-02
88GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.44E-02
89GO:0031624: ubiquitin conjugating enzyme binding1.53E-02
90GO:0008266: poly(U) RNA binding1.53E-02
91GO:0051537: 2 iron, 2 sulfur cluster binding1.55E-02
92GO:0035091: phosphatidylinositol binding1.55E-02
93GO:0051536: iron-sulfur cluster binding1.93E-02
94GO:0003729: mRNA binding1.94E-02
95GO:0003690: double-stranded DNA binding2.00E-02
96GO:0016887: ATPase activity2.11E-02
97GO:0022891: substrate-specific transmembrane transporter activity2.52E-02
98GO:0052689: carboxylic ester hydrolase activity2.75E-02
99GO:0008080: N-acetyltransferase activity3.16E-02
100GO:0004871: signal transducer activity3.22E-02
101GO:0010181: FMN binding3.32E-02
102GO:0019843: rRNA binding3.44E-02
103GO:0004872: receptor activity3.49E-02
104GO:0048038: quinone binding3.67E-02
105GO:0016787: hydrolase activity3.82E-02
106GO:0004518: nuclease activity3.84E-02
107GO:0016791: phosphatase activity4.20E-02
108GO:0019825: oxygen binding4.31E-02
109GO:0016722: oxidoreductase activity, oxidizing metal ions4.39E-02
110GO:0016597: amino acid binding4.57E-02
111GO:0004672: protein kinase activity4.93E-02
112GO:0016168: chlorophyll binding4.95E-02
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Gene type



Gene DE type