Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G12900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
2GO:0045014: negative regulation of transcription by glucose0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0090627: plant epidermal cell differentiation0.00E+00
5GO:0009606: tropism0.00E+00
6GO:0090322: regulation of superoxide metabolic process0.00E+00
7GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
8GO:1903224: regulation of endodermal cell differentiation0.00E+00
9GO:0080127: fruit septum development0.00E+00
10GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
11GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
12GO:0045184: establishment of protein localization0.00E+00
13GO:0090615: mitochondrial mRNA processing0.00E+00
14GO:0009451: RNA modification3.16E-09
15GO:0009793: embryo development ending in seed dormancy7.94E-06
16GO:0006518: peptide metabolic process4.33E-05
17GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.05E-05
18GO:2000038: regulation of stomatal complex development1.59E-04
19GO:0009658: chloroplast organization1.63E-04
20GO:0048497: maintenance of floral organ identity2.42E-04
21GO:0009913: epidermal cell differentiation3.41E-04
22GO:0042793: transcription from plastid promoter3.41E-04
23GO:0009942: longitudinal axis specification4.54E-04
24GO:1901259: chloroplast rRNA processing4.54E-04
25GO:0042659: regulation of cell fate specification5.43E-04
26GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process5.43E-04
27GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic5.43E-04
28GO:0090558: plant epidermis development5.43E-04
29GO:0010063: positive regulation of trichoblast fate specification5.43E-04
30GO:0010480: microsporocyte differentiation5.43E-04
31GO:1903866: palisade mesophyll development5.43E-04
32GO:0035987: endodermal cell differentiation5.43E-04
33GO:0006436: tryptophanyl-tRNA aminoacylation5.43E-04
34GO:0034757: negative regulation of iron ion transport5.43E-04
35GO:0048437: floral organ development5.81E-04
36GO:0006955: immune response5.81E-04
37GO:0009657: plastid organization8.82E-04
38GO:0007389: pattern specification process8.82E-04
39GO:0000373: Group II intron splicing1.05E-03
40GO:1901529: positive regulation of anion channel activity1.17E-03
41GO:0009967: positive regulation of signal transduction1.17E-03
42GO:0048255: mRNA stabilization1.17E-03
43GO:0019374: galactolipid metabolic process1.17E-03
44GO:1902326: positive regulation of chlorophyll biosynthetic process1.17E-03
45GO:0010271: regulation of chlorophyll catabolic process1.17E-03
46GO:0010541: acropetal auxin transport1.17E-03
47GO:0018026: peptidyl-lysine monomethylation1.17E-03
48GO:0009662: etioplast organization1.17E-03
49GO:1900033: negative regulation of trichome patterning1.17E-03
50GO:1904143: positive regulation of carotenoid biosynthetic process1.17E-03
51GO:0080009: mRNA methylation1.17E-03
52GO:2000123: positive regulation of stomatal complex development1.17E-03
53GO:1900865: chloroplast RNA modification1.24E-03
54GO:0010583: response to cyclopentenone1.29E-03
55GO:0006535: cysteine biosynthetic process from serine1.45E-03
56GO:0009734: auxin-activated signaling pathway1.46E-03
57GO:0090708: specification of plant organ axis polarity1.92E-03
58GO:0080117: secondary growth1.92E-03
59GO:0044210: 'de novo' CTP biosynthetic process1.92E-03
60GO:0090391: granum assembly1.92E-03
61GO:0045037: protein import into chloroplast stroma1.92E-03
62GO:0042780: tRNA 3'-end processing1.92E-03
63GO:0001578: microtubule bundle formation1.92E-03
64GO:0009432: SOS response1.92E-03
65GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.92E-03
66GO:0045910: negative regulation of DNA recombination1.92E-03
67GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.92E-03
68GO:0009416: response to light stimulus2.44E-03
69GO:0048481: plant ovule development2.67E-03
70GO:0010239: chloroplast mRNA processing2.78E-03
71GO:0010306: rhamnogalacturonan II biosynthetic process2.78E-03
72GO:0043481: anthocyanin accumulation in tissues in response to UV light2.78E-03
73GO:0019048: modulation by virus of host morphology or physiology2.78E-03
74GO:0051289: protein homotetramerization2.78E-03
75GO:0031048: chromatin silencing by small RNA2.78E-03
76GO:0000730: DNA recombinase assembly2.78E-03
77GO:0010371: regulation of gibberellin biosynthetic process2.78E-03
78GO:1902476: chloride transmembrane transport2.78E-03
79GO:0010071: root meristem specification2.78E-03
80GO:0051513: regulation of monopolar cell growth2.78E-03
81GO:0019344: cysteine biosynthetic process3.42E-03
82GO:0051322: anaphase3.75E-03
83GO:0030104: water homeostasis3.75E-03
84GO:0006221: pyrimidine nucleotide biosynthetic process3.75E-03
85GO:0006021: inositol biosynthetic process3.75E-03
86GO:0051567: histone H3-K9 methylation3.75E-03
87GO:0006479: protein methylation3.75E-03
88GO:0048629: trichome patterning3.75E-03
89GO:1900864: mitochondrial RNA modification3.75E-03
90GO:0006418: tRNA aminoacylation for protein translation3.78E-03
91GO:0016998: cell wall macromolecule catabolic process4.16E-03
92GO:0032876: negative regulation of DNA endoreduplication4.81E-03
93GO:0030308: negative regulation of cell growth4.81E-03
94GO:0010375: stomatal complex patterning4.81E-03
95GO:0009247: glycolipid biosynthetic process4.81E-03
96GO:0016120: carotene biosynthetic process4.81E-03
97GO:0016123: xanthophyll biosynthetic process4.81E-03
98GO:0071215: cellular response to abscisic acid stimulus4.97E-03
99GO:0040008: regulation of growth5.29E-03
100GO:0010091: trichome branching5.41E-03
101GO:0006655: phosphatidylglycerol biosynthetic process5.96E-03
102GO:0060918: auxin transport5.96E-03
103GO:1902456: regulation of stomatal opening5.96E-03
104GO:0048831: regulation of shoot system development5.96E-03
105GO:0016554: cytidine to uridine editing5.96E-03
106GO:0003006: developmental process involved in reproduction5.96E-03
107GO:0010315: auxin efflux5.96E-03
108GO:0016458: gene silencing5.96E-03
109GO:0009643: photosynthetic acclimation5.96E-03
110GO:0006014: D-ribose metabolic process5.96E-03
111GO:0008033: tRNA processing6.35E-03
112GO:0010501: RNA secondary structure unwinding6.35E-03
113GO:0010087: phloem or xylem histogenesis6.35E-03
114GO:0010305: leaf vascular tissue pattern formation6.85E-03
115GO:0048868: pollen tube development6.85E-03
116GO:0009082: branched-chain amino acid biosynthetic process7.20E-03
117GO:0006458: 'de novo' protein folding7.20E-03
118GO:0042026: protein refolding7.20E-03
119GO:0048509: regulation of meristem development7.20E-03
120GO:0009099: valine biosynthetic process7.20E-03
121GO:2000037: regulation of stomatal complex patterning7.20E-03
122GO:0010310: regulation of hydrogen peroxide metabolic process7.20E-03
123GO:2000067: regulation of root morphogenesis7.20E-03
124GO:0009955: adaxial/abaxial pattern specification7.20E-03
125GO:0009736: cytokinin-activated signaling pathway7.34E-03
126GO:0048825: cotyledon development7.91E-03
127GO:0080156: mitochondrial mRNA modification8.47E-03
128GO:0042148: strand invasion8.52E-03
129GO:0006821: chloride transport8.52E-03
130GO:0010103: stomatal complex morphogenesis8.52E-03
131GO:0006401: RNA catabolic process8.52E-03
132GO:0048364: root development9.00E-03
133GO:0048367: shoot system development9.47E-03
134GO:0006402: mRNA catabolic process9.92E-03
135GO:0001522: pseudouridine synthesis9.92E-03
136GO:0009642: response to light intensity9.92E-03
137GO:0019375: galactolipid biosynthetic process9.92E-03
138GO:0046620: regulation of organ growth9.92E-03
139GO:0048766: root hair initiation9.92E-03
140GO:0055075: potassium ion homeostasis9.92E-03
141GO:0000105: histidine biosynthetic process9.92E-03
142GO:0010252: auxin homeostasis1.03E-02
143GO:0009828: plant-type cell wall loosening1.03E-02
144GO:0009553: embryo sac development1.11E-02
145GO:0019430: removal of superoxide radicals1.14E-02
146GO:0009827: plant-type cell wall modification1.14E-02
147GO:0010212: response to ionizing radiation1.14E-02
148GO:0009097: isoleucine biosynthetic process1.14E-02
149GO:0010497: plasmodesmata-mediated intercellular transport1.14E-02
150GO:0032544: plastid translation1.14E-02
151GO:0006396: RNA processing1.20E-02
152GO:0010027: thylakoid membrane organization1.23E-02
153GO:0048507: meristem development1.30E-02
154GO:0048589: developmental growth1.30E-02
155GO:0000902: cell morphogenesis1.30E-02
156GO:0009733: response to auxin1.44E-02
157GO:0042761: very long-chain fatty acid biosynthetic process1.46E-02
158GO:2000280: regulation of root development1.46E-02
159GO:0006349: regulation of gene expression by genetic imprinting1.46E-02
160GO:0031425: chloroplast RNA processing1.46E-02
161GO:0030422: production of siRNA involved in RNA interference1.63E-02
162GO:0048829: root cap development1.63E-02
163GO:0045036: protein targeting to chloroplast1.63E-02
164GO:0006298: mismatch repair1.63E-02
165GO:0016441: posttranscriptional gene silencing1.63E-02
166GO:0006259: DNA metabolic process1.63E-02
167GO:0010048: vernalization response1.63E-02
168GO:0000160: phosphorelay signal transduction system1.69E-02
169GO:0009845: seed germination1.70E-02
170GO:0006265: DNA topological change1.81E-02
171GO:0009750: response to fructose1.81E-02
172GO:0048229: gametophyte development1.81E-02
173GO:0048765: root hair cell differentiation1.81E-02
174GO:0009790: embryo development1.87E-02
175GO:0006865: amino acid transport1.96E-02
176GO:0006312: mitotic recombination1.99E-02
177GO:0012501: programmed cell death1.99E-02
178GO:0010152: pollen maturation1.99E-02
179GO:0016024: CDP-diacylglycerol biosynthetic process1.99E-02
180GO:0010582: floral meristem determinacy1.99E-02
181GO:0008361: regulation of cell size1.99E-02
182GO:0006790: sulfur compound metabolic process1.99E-02
183GO:0010588: cotyledon vascular tissue pattern formation2.18E-02
184GO:0010102: lateral root morphogenesis2.18E-02
185GO:0009691: cytokinin biosynthetic process2.18E-02
186GO:0010075: regulation of meristem growth2.18E-02
187GO:0048467: gynoecium development2.37E-02
188GO:0010020: chloroplast fission2.37E-02
189GO:0010540: basipetal auxin transport2.37E-02
190GO:0009934: regulation of meristem structural organization2.37E-02
191GO:0080188: RNA-directed DNA methylation2.58E-02
192GO:0046854: phosphatidylinositol phosphorylation2.58E-02
193GO:0009926: auxin polar transport2.64E-02
194GO:0006833: water transport2.78E-02
195GO:0006351: transcription, DNA-templated2.88E-02
196GO:0006397: mRNA processing2.91E-02
197GO:0080147: root hair cell development3.00E-02
198GO:0006468: protein phosphorylation3.19E-02
199GO:0019953: sexual reproduction3.22E-02
200GO:0051302: regulation of cell division3.22E-02
201GO:0009664: plant-type cell wall organization3.32E-02
202GO:0061077: chaperone-mediated protein folding3.44E-02
203GO:0006306: DNA methylation3.44E-02
204GO:0003333: amino acid transmembrane transport3.44E-02
205GO:0015992: proton transport3.44E-02
206GO:0010431: seed maturation3.44E-02
207GO:0006364: rRNA processing3.56E-02
208GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.90E-02
209GO:0010082: regulation of root meristem growth3.90E-02
210GO:0006357: regulation of transcription from RNA polymerase II promoter4.11E-02
211GO:0048443: stamen development4.14E-02
212GO:0042127: regulation of cell proliferation4.14E-02
213GO:0006284: base-excision repair4.14E-02
214GO:0009306: protein secretion4.14E-02
215GO:0048316: seed development4.34E-02
216GO:0070417: cellular response to cold4.39E-02
217GO:0006355: regulation of transcription, DNA-templated4.60E-02
218GO:0042631: cellular response to water deprivation4.63E-02
219GO:0000226: microtubule cytoskeleton organization4.63E-02
220GO:0080022: primary root development4.63E-02
221GO:0042335: cuticle development4.63E-02
222GO:0010118: stomatal movement4.63E-02
223GO:0048653: anther development4.63E-02
224GO:0009958: positive gravitropism4.89E-02
225GO:0009960: endosperm development4.89E-02
226GO:0006662: glycerol ether metabolic process4.89E-02
227GO:0006342: chromatin silencing4.89E-02
228GO:0009741: response to brassinosteroid4.89E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0042834: peptidoglycan binding0.00E+00
3GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
4GO:0004401: histidinol-phosphatase activity0.00E+00
5GO:0070009: serine-type aminopeptidase activity0.00E+00
6GO:0052834: inositol monophosphate phosphatase activity0.00E+00
7GO:0004519: endonuclease activity8.34E-11
8GO:0003723: RNA binding1.30E-07
9GO:0008173: RNA methyltransferase activity4.79E-05
10GO:0004124: cysteine synthase activity4.54E-04
11GO:0004222: metalloendopeptidase activity4.96E-04
12GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity5.43E-04
13GO:0016274: protein-arginine N-methyltransferase activity5.43E-04
14GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.43E-04
15GO:0004830: tryptophan-tRNA ligase activity5.43E-04
16GO:0052381: tRNA dimethylallyltransferase activity5.43E-04
17GO:0004160: dihydroxy-acid dehydratase activity5.43E-04
18GO:0004654: polyribonucleotide nucleotidyltransferase activity5.43E-04
19GO:0010347: L-galactose-1-phosphate phosphatase activity5.43E-04
20GO:0004016: adenylate cyclase activity5.43E-04
21GO:0008934: inositol monophosphate 1-phosphatase activity1.17E-03
22GO:0052833: inositol monophosphate 4-phosphatase activity1.17E-03
23GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.17E-03
24GO:0005078: MAP-kinase scaffold activity1.17E-03
25GO:0009884: cytokinin receptor activity1.17E-03
26GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.17E-03
27GO:0052832: inositol monophosphate 3-phosphatase activity1.17E-03
28GO:0009672: auxin:proton symporter activity1.24E-03
29GO:0017150: tRNA dihydrouridine synthase activity1.92E-03
30GO:0042781: 3'-tRNA processing endoribonuclease activity1.92E-03
31GO:0005034: osmosensor activity1.92E-03
32GO:0010329: auxin efflux transmembrane transporter activity2.18E-03
33GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.46E-03
34GO:0009678: hydrogen-translocating pyrophosphatase activity2.78E-03
35GO:0003883: CTP synthase activity2.78E-03
36GO:0009041: uridylate kinase activity2.78E-03
37GO:0035197: siRNA binding2.78E-03
38GO:0008508: bile acid:sodium symporter activity2.78E-03
39GO:0001872: (1->3)-beta-D-glucan binding2.78E-03
40GO:0019843: rRNA binding3.47E-03
41GO:0010328: auxin influx transmembrane transporter activity3.75E-03
42GO:0005253: anion channel activity3.75E-03
43GO:0004930: G-protein coupled receptor activity3.75E-03
44GO:0016279: protein-lysine N-methyltransferase activity3.75E-03
45GO:0010011: auxin binding3.75E-03
46GO:0016836: hydro-lyase activity3.75E-03
47GO:0005524: ATP binding4.73E-03
48GO:0004888: transmembrane signaling receptor activity4.81E-03
49GO:0005275: amine transmembrane transporter activity4.81E-03
50GO:0016773: phosphotransferase activity, alcohol group as acceptor4.81E-03
51GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.81E-03
52GO:0008725: DNA-3-methyladenine glycosylase activity4.81E-03
53GO:0030570: pectate lyase activity4.97E-03
54GO:0004812: aminoacyl-tRNA ligase activity5.87E-03
55GO:0004784: superoxide dismutase activity5.96E-03
56GO:0005247: voltage-gated chloride channel activity5.96E-03
57GO:0030983: mismatched DNA binding5.96E-03
58GO:0004605: phosphatidate cytidylyltransferase activity5.96E-03
59GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity7.20E-03
60GO:0004747: ribokinase activity7.20E-03
61GO:0019900: kinase binding7.20E-03
62GO:0008195: phosphatidate phosphatase activity7.20E-03
63GO:0019901: protein kinase binding7.91E-03
64GO:0004427: inorganic diphosphatase activity8.52E-03
65GO:0000150: recombinase activity8.52E-03
66GO:0000400: four-way junction DNA binding9.92E-03
67GO:0008865: fructokinase activity9.92E-03
68GO:0004520: endodeoxyribonuclease activity9.92E-03
69GO:0008168: methyltransferase activity1.04E-02
70GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.14E-02
71GO:0003724: RNA helicase activity1.14E-02
72GO:0008026: ATP-dependent helicase activity1.24E-02
73GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.30E-02
74GO:0004004: ATP-dependent RNA helicase activity1.45E-02
75GO:0008289: lipid binding1.48E-02
76GO:0003700: transcription factor activity, sequence-specific DNA binding1.62E-02
77GO:0004673: protein histidine kinase activity1.63E-02
78GO:0016887: ATPase activity1.78E-02
79GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.81E-02
80GO:0008559: xenobiotic-transporting ATPase activity1.81E-02
81GO:0044183: protein binding involved in protein folding1.81E-02
82GO:0004521: endoribonuclease activity1.99E-02
83GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting2.00E-02
84GO:0003677: DNA binding2.04E-02
85GO:0043565: sequence-specific DNA binding2.04E-02
86GO:0004871: signal transducer activity2.15E-02
87GO:0003725: double-stranded RNA binding2.18E-02
88GO:0000175: 3'-5'-exoribonuclease activity2.18E-02
89GO:0031072: heat shock protein binding2.18E-02
90GO:0000155: phosphorelay sensor kinase activity2.18E-02
91GO:0009982: pseudouridine synthase activity2.18E-02
92GO:0051539: 4 iron, 4 sulfur cluster binding2.34E-02
93GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding2.35E-02
94GO:0004190: aspartic-type endopeptidase activity2.58E-02
95GO:0043424: protein histidine kinase binding3.22E-02
96GO:0015079: potassium ion transmembrane transporter activity3.22E-02
97GO:0046872: metal ion binding3.40E-02
98GO:0008094: DNA-dependent ATPase activity3.44E-02
99GO:0004176: ATP-dependent peptidase activity3.44E-02
100GO:0033612: receptor serine/threonine kinase binding3.44E-02
101GO:0008408: 3'-5' exonuclease activity3.44E-02
102GO:0003690: double-stranded DNA binding3.68E-02
103GO:0004674: protein serine/threonine kinase activity3.72E-02
104GO:0003777: microtubule motor activity3.94E-02
105GO:0015171: amino acid transmembrane transporter activity3.94E-02
106GO:0003727: single-stranded RNA binding4.14E-02
107GO:0018024: histone-lysine N-methyltransferase activity4.39E-02
108GO:0047134: protein-disulfide reductase activity4.39E-02
109GO:0001085: RNA polymerase II transcription factor binding4.89E-02
110GO:0004527: exonuclease activity4.89E-02
111GO:0003713: transcription coactivator activity4.89E-02
112GO:0003779: actin binding4.90E-02
<
Gene type



Gene DE type