Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G12110

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031116: positive regulation of microtubule polymerization0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0042820: vitamin B6 catabolic process0.00E+00
4GO:0042821: pyridoxal biosynthetic process0.00E+00
5GO:0042407: cristae formation0.00E+00
6GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
7GO:0009106: lipoate metabolic process0.00E+00
8GO:0090042: tubulin deacetylation0.00E+00
9GO:0071474: cellular hyperosmotic response0.00E+00
10GO:0006114: glycerol biosynthetic process0.00E+00
11GO:0018023: peptidyl-lysine trimethylation0.00E+00
12GO:1902458: positive regulation of stomatal opening0.00E+00
13GO:0070125: mitochondrial translational elongation0.00E+00
14GO:0006429: leucyl-tRNA aminoacylation0.00E+00
15GO:0009249: protein lipoylation0.00E+00
16GO:0019685: photosynthesis, dark reaction0.00E+00
17GO:2000505: regulation of energy homeostasis0.00E+00
18GO:0002184: cytoplasmic translational termination0.00E+00
19GO:0017038: protein import0.00E+00
20GO:0046460: neutral lipid biosynthetic process0.00E+00
21GO:0031054: pre-miRNA processing0.00E+00
22GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
23GO:0090470: shoot organ boundary specification0.00E+00
24GO:0090279: regulation of calcium ion import0.00E+00
25GO:0071482: cellular response to light stimulus1.36E-06
26GO:0015995: chlorophyll biosynthetic process3.49E-06
27GO:0045038: protein import into chloroplast thylakoid membrane5.67E-06
28GO:1903426: regulation of reactive oxygen species biosynthetic process1.49E-05
29GO:0010207: photosystem II assembly1.58E-05
30GO:0032544: plastid translation5.74E-05
31GO:2001141: regulation of RNA biosynthetic process1.05E-04
32GO:0006782: protoporphyrinogen IX biosynthetic process1.28E-04
33GO:0006352: DNA-templated transcription, initiation1.60E-04
34GO:0032543: mitochondrial translation2.73E-04
35GO:0010027: thylakoid membrane organization3.33E-04
36GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.83E-04
37GO:0010190: cytochrome b6f complex assembly3.83E-04
38GO:0030488: tRNA methylation5.09E-04
39GO:0015671: oxygen transport5.87E-04
40GO:0043266: regulation of potassium ion transport5.87E-04
41GO:0000481: maturation of 5S rRNA5.87E-04
42GO:0006659: phosphatidylserine biosynthetic process5.87E-04
43GO:0042547: cell wall modification involved in multidimensional cell growth5.87E-04
44GO:0043686: co-translational protein modification5.87E-04
45GO:2000021: regulation of ion homeostasis5.87E-04
46GO:0034337: RNA folding5.87E-04
47GO:0000476: maturation of 4.5S rRNA5.87E-04
48GO:0009443: pyridoxal 5'-phosphate salvage5.87E-04
49GO:0000967: rRNA 5'-end processing5.87E-04
50GO:0009395: phospholipid catabolic process6.51E-04
51GO:2000070: regulation of response to water deprivation8.10E-04
52GO:0000105: histidine biosynthetic process8.10E-04
53GO:0009658: chloroplast organization9.24E-04
54GO:0019432: triglyceride biosynthetic process1.18E-03
55GO:0006783: heme biosynthetic process1.18E-03
56GO:0010206: photosystem II repair1.18E-03
57GO:0030187: melatonin biosynthetic process1.26E-03
58GO:0006432: phenylalanyl-tRNA aminoacylation1.26E-03
59GO:0018026: peptidyl-lysine monomethylation1.26E-03
60GO:0090342: regulation of cell aging1.26E-03
61GO:0006423: cysteinyl-tRNA aminoacylation1.26E-03
62GO:0006435: threonyl-tRNA aminoacylation1.26E-03
63GO:0051262: protein tetramerization1.26E-03
64GO:0034470: ncRNA processing1.26E-03
65GO:0010198: synergid death1.26E-03
66GO:1900871: chloroplast mRNA modification1.26E-03
67GO:1900865: chloroplast RNA modification1.39E-03
68GO:0006415: translational termination1.88E-03
69GO:0009684: indoleacetic acid biosynthetic process1.88E-03
70GO:0009089: lysine biosynthetic process via diaminopimelate1.88E-03
71GO:0010589: leaf proximal/distal pattern formation2.07E-03
72GO:0009405: pathogenesis2.07E-03
73GO:0051604: protein maturation2.07E-03
74GO:0015940: pantothenate biosynthetic process2.07E-03
75GO:0001578: microtubule bundle formation2.07E-03
76GO:0045493: xylan catabolic process2.07E-03
77GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition2.07E-03
78GO:0033591: response to L-ascorbic acid2.07E-03
79GO:0016024: CDP-diacylglycerol biosynthetic process2.16E-03
80GO:0045037: protein import into chloroplast stroma2.16E-03
81GO:2000012: regulation of auxin polar transport2.45E-03
82GO:0009627: systemic acquired resistance2.54E-03
83GO:0006424: glutamyl-tRNA aminoacylation3.01E-03
84GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.01E-03
85GO:0046739: transport of virus in multicellular host3.01E-03
86GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.01E-03
87GO:0010371: regulation of gibberellin biosynthetic process3.01E-03
88GO:0009102: biotin biosynthetic process3.01E-03
89GO:0009152: purine ribonucleotide biosynthetic process3.01E-03
90GO:0046653: tetrahydrofolate metabolic process3.01E-03
91GO:0009052: pentose-phosphate shunt, non-oxidative branch3.01E-03
92GO:0006021: inositol biosynthetic process4.06E-03
93GO:0007020: microtubule nucleation4.06E-03
94GO:0071483: cellular response to blue light4.06E-03
95GO:0010109: regulation of photosynthesis4.06E-03
96GO:0051322: anaphase4.06E-03
97GO:0009765: photosynthesis, light harvesting4.06E-03
98GO:0035279: mRNA cleavage involved in gene silencing by miRNA4.06E-03
99GO:0022622: root system development4.06E-03
100GO:0006418: tRNA aminoacylation for protein translation4.25E-03
101GO:0048511: rhythmic process4.68E-03
102GO:0016120: carotene biosynthetic process5.21E-03
103GO:0010236: plastoquinone biosynthetic process5.21E-03
104GO:0031365: N-terminal protein amino acid modification5.21E-03
105GO:0009107: lipoate biosynthetic process5.21E-03
106GO:0016123: xanthophyll biosynthetic process5.21E-03
107GO:0000304: response to singlet oxygen5.21E-03
108GO:0080110: sporopollenin biosynthetic process5.21E-03
109GO:0046785: microtubule polymerization5.21E-03
110GO:0006413: translational initiation6.10E-03
111GO:0032973: amino acid export6.46E-03
112GO:0042549: photosystem II stabilization6.46E-03
113GO:0010264: myo-inositol hexakisphosphate biosynthetic process6.46E-03
114GO:0006655: phosphatidylglycerol biosynthetic process6.46E-03
115GO:0016554: cytidine to uridine editing6.46E-03
116GO:0015979: photosynthesis6.55E-03
117GO:0009958: positive gravitropism7.71E-03
118GO:0034389: lipid particle organization7.81E-03
119GO:1901259: chloroplast rRNA processing7.81E-03
120GO:0009648: photoperiodism7.81E-03
121GO:0010310: regulation of hydrogen peroxide metabolic process7.81E-03
122GO:0009955: adaxial/abaxial pattern specification7.81E-03
123GO:0006614: SRP-dependent cotranslational protein targeting to membrane9.25E-03
124GO:0035196: production of miRNAs involved in gene silencing by miRNA9.25E-03
125GO:0032880: regulation of protein localization9.25E-03
126GO:0048528: post-embryonic root development9.25E-03
127GO:0043090: amino acid import9.25E-03
128GO:0016032: viral process1.02E-02
129GO:0006605: protein targeting1.08E-02
130GO:0010078: maintenance of root meristem identity1.08E-02
131GO:0032508: DNA duplex unwinding1.08E-02
132GO:0007186: G-protein coupled receptor signaling pathway1.24E-02
133GO:0009657: plastid organization1.24E-02
134GO:0043562: cellular response to nitrogen levels1.24E-02
135GO:0017004: cytochrome complex assembly1.24E-02
136GO:0022900: electron transport chain1.24E-02
137GO:0015996: chlorophyll catabolic process1.24E-02
138GO:0009821: alkaloid biosynthetic process1.41E-02
139GO:0080144: amino acid homeostasis1.41E-02
140GO:0010267: production of ta-siRNAs involved in RNA interference1.59E-02
141GO:0043067: regulation of programmed cell death1.59E-02
142GO:0006779: porphyrin-containing compound biosynthetic process1.59E-02
143GO:0016311: dephosphorylation1.73E-02
144GO:0006535: cysteine biosynthetic process from serine1.77E-02
145GO:0045036: protein targeting to chloroplast1.77E-02
146GO:0006949: syncytium formation1.77E-02
147GO:0010629: negative regulation of gene expression1.77E-02
148GO:0009773: photosynthetic electron transport in photosystem I1.96E-02
149GO:0008285: negative regulation of cell proliferation1.96E-02
150GO:1903507: negative regulation of nucleic acid-templated transcription1.96E-02
151GO:0019684: photosynthesis, light reaction1.96E-02
152GO:0007568: aging2.10E-02
153GO:0048527: lateral root development2.10E-02
154GO:0045087: innate immune response2.31E-02
155GO:0009735: response to cytokinin2.36E-02
156GO:0009725: response to hormone2.37E-02
157GO:0010588: cotyledon vascular tissue pattern formation2.37E-02
158GO:0009266: response to temperature stimulus2.58E-02
159GO:0048467: gynoecium development2.58E-02
160GO:0010143: cutin biosynthetic process2.58E-02
161GO:0006631: fatty acid metabolic process2.74E-02
162GO:0055114: oxidation-reduction process2.75E-02
163GO:0071732: cellular response to nitric oxide2.80E-02
164GO:0090351: seedling development2.80E-02
165GO:0019853: L-ascorbic acid biosynthetic process2.80E-02
166GO:0006071: glycerol metabolic process3.03E-02
167GO:0000162: tryptophan biosynthetic process3.03E-02
168GO:0016042: lipid catabolic process3.12E-02
169GO:0007010: cytoskeleton organization3.26E-02
170GO:0006289: nucleotide-excision repair3.26E-02
171GO:0019344: cysteine biosynthetic process3.26E-02
172GO:0043622: cortical microtubule organization3.50E-02
173GO:0007017: microtubule-based process3.50E-02
174GO:0010073: meristem maintenance3.50E-02
175GO:0016575: histone deacetylation3.50E-02
176GO:0009793: embryo development ending in seed dormancy3.68E-02
177GO:0009664: plant-type cell wall organization3.73E-02
178GO:0016114: terpenoid biosynthetic process3.74E-02
179GO:0061077: chaperone-mediated protein folding3.74E-02
180GO:0031408: oxylipin biosynthetic process3.74E-02
181GO:2000022: regulation of jasmonic acid mediated signaling pathway3.99E-02
182GO:0031348: negative regulation of defense response3.99E-02
183GO:0080092: regulation of pollen tube growth3.99E-02
184GO:0019748: secondary metabolic process3.99E-02
185GO:0009814: defense response, incompatible interaction3.99E-02
186GO:0010017: red or far-red light signaling pathway3.99E-02
187GO:0006457: protein folding4.20E-02
188GO:0071369: cellular response to ethylene stimulus4.25E-02
189GO:0010227: floral organ abscission4.25E-02
190GO:0006012: galactose metabolic process4.25E-02
191GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.25E-02
192GO:0009306: protein secretion4.51E-02
193GO:0010584: pollen exine formation4.51E-02
194GO:0016117: carotenoid biosynthetic process4.77E-02
195GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.77E-02
196GO:0008284: positive regulation of cell proliferation4.77E-02
RankGO TermAdjusted P value
1GO:0043014: alpha-tubulin binding0.00E+00
2GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
3GO:0051721: protein phosphatase 2A binding0.00E+00
4GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
5GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
6GO:0042903: tubulin deacetylase activity0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0004823: leucine-tRNA ligase activity0.00E+00
9GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
12GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
13GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
14GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
15GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
16GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
17GO:0005048: signal sequence binding0.00E+00
18GO:0004076: biotin synthase activity0.00E+00
19GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
20GO:0043136: glycerol-3-phosphatase activity0.00E+00
21GO:0000121: glycerol-1-phosphatase activity0.00E+00
22GO:0019144: ADP-sugar diphosphatase activity0.00E+00
23GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
24GO:0010349: L-galactose dehydrogenase activity0.00E+00
25GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
26GO:0043864: indoleacetamide hydrolase activity0.00E+00
27GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
28GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
29GO:0050613: delta14-sterol reductase activity0.00E+00
30GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
31GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.53E-06
32GO:0001053: plastid sigma factor activity2.57E-06
33GO:0016987: sigma factor activity2.57E-06
34GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.49E-05
35GO:0005528: FK506 binding3.17E-05
36GO:0002161: aminoacyl-tRNA editing activity4.97E-05
37GO:0030267: glyoxylate reductase (NADP) activity4.97E-05
38GO:0070402: NADPH binding4.97E-05
39GO:0016149: translation release factor activity, codon specific1.05E-04
40GO:0016851: magnesium chelatase activity1.05E-04
41GO:0016788: hydrolase activity, acting on ester bonds2.31E-04
42GO:0004040: amidase activity2.73E-04
43GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.83E-04
44GO:0004017: adenylate kinase activity5.09E-04
45GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.09E-04
46GO:0005080: protein kinase C binding5.87E-04
47GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.87E-04
48GO:0042586: peptide deformylase activity5.87E-04
49GO:0016784: 3-mercaptopyruvate sulfurtransferase activity5.87E-04
50GO:0005344: oxygen transporter activity5.87E-04
51GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.87E-04
52GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity5.87E-04
53GO:0005227: calcium activated cation channel activity5.87E-04
54GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.87E-04
55GO:0004856: xylulokinase activity5.87E-04
56GO:0009496: plastoquinol--plastocyanin reductase activity5.87E-04
57GO:0080042: ADP-glucose pyrophosphohydrolase activity5.87E-04
58GO:0003993: acid phosphatase activity7.89E-04
59GO:0004033: aldo-keto reductase (NADP) activity8.10E-04
60GO:0003747: translation release factor activity1.18E-03
61GO:0004826: phenylalanine-tRNA ligase activity1.26E-03
62GO:0004512: inositol-3-phosphate synthase activity1.26E-03
63GO:0050017: L-3-cyanoalanine synthase activity1.26E-03
64GO:0017118: lipoyltransferase activity1.26E-03
65GO:0080041: ADP-ribose pyrophosphohydrolase activity1.26E-03
66GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.26E-03
67GO:0009977: proton motive force dependent protein transmembrane transporter activity1.26E-03
68GO:0016415: octanoyltransferase activity1.26E-03
69GO:0004817: cysteine-tRNA ligase activity1.26E-03
70GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.26E-03
71GO:0016630: protochlorophyllide reductase activity1.26E-03
72GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity1.26E-03
73GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity1.26E-03
74GO:0004829: threonine-tRNA ligase activity1.26E-03
75GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.26E-03
76GO:0016491: oxidoreductase activity1.55E-03
77GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.07E-03
78GO:0003913: DNA photolyase activity2.07E-03
79GO:0004751: ribose-5-phosphate isomerase activity2.07E-03
80GO:0016742: hydroxymethyl-, formyl- and related transferase activity2.07E-03
81GO:0008864: formyltetrahydrofolate deformylase activity2.07E-03
82GO:0015462: ATPase-coupled protein transmembrane transporter activity2.07E-03
83GO:0005504: fatty acid binding2.07E-03
84GO:0000049: tRNA binding2.16E-03
85GO:0031072: heat shock protein binding2.45E-03
86GO:0008236: serine-type peptidase activity2.90E-03
87GO:0048487: beta-tubulin binding3.01E-03
88GO:0004792: thiosulfate sulfurtransferase activity3.01E-03
89GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor3.01E-03
90GO:0043023: ribosomal large subunit binding3.01E-03
91GO:0035198: miRNA binding3.01E-03
92GO:0019201: nucleotide kinase activity3.01E-03
93GO:0046556: alpha-L-arabinofuranosidase activity4.06E-03
94GO:0016279: protein-lysine N-methyltransferase activity4.06E-03
95GO:0004045: aminoacyl-tRNA hydrolase activity4.06E-03
96GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.06E-03
97GO:0070628: proteasome binding4.06E-03
98GO:0045430: chalcone isomerase activity4.06E-03
99GO:0009044: xylan 1,4-beta-xylosidase activity4.06E-03
100GO:0016773: phosphotransferase activity, alcohol group as acceptor5.21E-03
101GO:0003959: NADPH dehydrogenase activity5.21E-03
102GO:0016846: carbon-sulfur lyase activity5.21E-03
103GO:0030570: pectate lyase activity5.60E-03
104GO:0042578: phosphoric ester hydrolase activity6.46E-03
105GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity6.46E-03
106GO:0031593: polyubiquitin binding6.46E-03
107GO:0004812: aminoacyl-tRNA ligase activity6.60E-03
108GO:0008080: N-acetyltransferase activity7.71E-03
109GO:0016832: aldehyde-lyase activity7.81E-03
110GO:0004144: diacylglycerol O-acyltransferase activity7.81E-03
111GO:0005261: cation channel activity7.81E-03
112GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.81E-03
113GO:0009927: histidine phosphotransfer kinase activity7.81E-03
114GO:0004124: cysteine synthase activity7.81E-03
115GO:0051920: peroxiredoxin activity7.81E-03
116GO:0003899: DNA-directed 5'-3' RNA polymerase activity8.52E-03
117GO:0003743: translation initiation factor activity8.61E-03
118GO:0009881: photoreceptor activity9.25E-03
119GO:0043022: ribosome binding1.08E-02
120GO:0016209: antioxidant activity1.08E-02
121GO:0008312: 7S RNA binding1.08E-02
122GO:0008173: RNA methyltransferase activity1.24E-02
123GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.24E-02
124GO:0016787: hydrolase activity1.38E-02
125GO:0016844: strictosidine synthase activity1.59E-02
126GO:0047372: acylglycerol lipase activity1.96E-02
127GO:0005089: Rho guanyl-nucleotide exchange factor activity1.96E-02
128GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.10E-02
129GO:0052689: carboxylic ester hydrolase activity2.12E-02
130GO:0003725: double-stranded RNA binding2.37E-02
131GO:0003723: RNA binding2.43E-02
132GO:0005525: GTP binding2.47E-02
133GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.58E-02
134GO:0008266: poly(U) RNA binding2.58E-02
135GO:0008083: growth factor activity2.58E-02
136GO:0008017: microtubule binding2.84E-02
137GO:0004185: serine-type carboxypeptidase activity2.97E-02
138GO:0051537: 2 iron, 2 sulfur cluster binding3.22E-02
139GO:0003714: transcription corepressor activity3.26E-02
140GO:0051536: iron-sulfur cluster binding3.26E-02
141GO:0004407: histone deacetylase activity3.26E-02
142GO:0043130: ubiquitin binding3.26E-02
143GO:0005198: structural molecule activity3.34E-02
144GO:0051087: chaperone binding3.50E-02
145GO:0003756: protein disulfide isomerase activity4.51E-02
146GO:0004601: peroxidase activity4.60E-02
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Gene type



Gene DE type