Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G12050

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015843: methylammonium transport0.00E+00
2GO:0031222: arabinan catabolic process0.00E+00
3GO:0006429: leucyl-tRNA aminoacylation0.00E+00
4GO:0070979: protein K11-linked ubiquitination0.00E+00
5GO:1905421: regulation of plant organ morphogenesis0.00E+00
6GO:0043488: regulation of mRNA stability0.00E+00
7GO:0030155: regulation of cell adhesion0.00E+00
8GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
9GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
10GO:0031116: positive regulation of microtubule polymerization0.00E+00
11GO:0010068: protoderm histogenesis0.00E+00
12GO:0090071: negative regulation of ribosome biogenesis0.00E+00
13GO:1903224: regulation of endodermal cell differentiation0.00E+00
14GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
15GO:0007638: mechanosensory behavior0.00E+00
16GO:1905177: tracheary element differentiation0.00E+00
17GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
18GO:0097164: ammonium ion metabolic process0.00E+00
19GO:0045184: establishment of protein localization0.00E+00
20GO:0009733: response to auxin9.36E-08
21GO:0009734: auxin-activated signaling pathway4.83E-07
22GO:0046620: regulation of organ growth6.62E-07
23GO:0040008: regulation of growth5.40E-06
24GO:0009926: auxin polar transport1.55E-05
25GO:0009658: chloroplast organization2.94E-05
26GO:0009657: plastid organization4.97E-05
27GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.53E-05
28GO:0000373: Group II intron splicing6.72E-05
29GO:0016123: xanthophyll biosynthetic process2.48E-04
30GO:1902458: positive regulation of stomatal opening5.51E-04
31GO:0006177: GMP biosynthetic process5.51E-04
32GO:0006747: FAD biosynthetic process5.51E-04
33GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.51E-04
34GO:0000476: maturation of 4.5S rRNA5.51E-04
35GO:0000967: rRNA 5'-end processing5.51E-04
36GO:0051418: microtubule nucleation by microtubule organizing center5.51E-04
37GO:0042659: regulation of cell fate specification5.51E-04
38GO:0070509: calcium ion import5.51E-04
39GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.51E-04
40GO:0090558: plant epidermis development5.51E-04
41GO:0010480: microsporocyte differentiation5.51E-04
42GO:0035987: endodermal cell differentiation5.51E-04
43GO:0006436: tryptophanyl-tRNA aminoacylation5.51E-04
44GO:0034080: CENP-A containing nucleosome assembly5.51E-04
45GO:0048528: post-embryonic root development5.95E-04
46GO:0042255: ribosome assembly7.41E-04
47GO:0006353: DNA-templated transcription, termination7.41E-04
48GO:0007389: pattern specification process9.02E-04
49GO:1903426: regulation of reactive oxygen species biosynthetic process1.19E-03
50GO:2000123: positive regulation of stomatal complex development1.19E-03
51GO:0034470: ncRNA processing1.19E-03
52GO:0070981: L-asparagine biosynthetic process1.19E-03
53GO:0033566: gamma-tubulin complex localization1.19E-03
54GO:0009220: pyrimidine ribonucleotide biosynthetic process1.19E-03
55GO:0006529: asparagine biosynthetic process1.19E-03
56GO:0032502: developmental process1.33E-03
57GO:0007052: mitotic spindle organization1.95E-03
58GO:0045910: negative regulation of DNA recombination1.95E-03
59GO:0048281: inflorescence morphogenesis1.95E-03
60GO:0051127: positive regulation of actin nucleation1.95E-03
61GO:0090708: specification of plant organ axis polarity1.95E-03
62GO:0006954: inflammatory response1.95E-03
63GO:0031145: anaphase-promoting complex-dependent catabolic process1.95E-03
64GO:0010623: programmed cell death involved in cell development1.95E-03
65GO:0001578: microtubule bundle formation1.95E-03
66GO:0006760: folic acid-containing compound metabolic process1.95E-03
67GO:0010020: chloroplast fission2.52E-03
68GO:1902476: chloride transmembrane transport2.82E-03
69GO:0051513: regulation of monopolar cell growth2.82E-03
70GO:0007231: osmosensory signaling pathway2.82E-03
71GO:0030071: regulation of mitotic metaphase/anaphase transition2.82E-03
72GO:0051639: actin filament network formation2.82E-03
73GO:0010239: chloroplast mRNA processing2.82E-03
74GO:0009226: nucleotide-sugar biosynthetic process2.82E-03
75GO:0048645: animal organ formation2.82E-03
76GO:0044211: CTP salvage2.82E-03
77GO:0015696: ammonium transport2.82E-03
78GO:0046739: transport of virus in multicellular host2.82E-03
79GO:0019048: modulation by virus of host morphology or physiology2.82E-03
80GO:0032981: mitochondrial respiratory chain complex I assembly2.82E-03
81GO:2000904: regulation of starch metabolic process2.82E-03
82GO:0090307: mitotic spindle assembly2.82E-03
83GO:0031048: chromatin silencing by small RNA2.82E-03
84GO:0010148: transpiration2.82E-03
85GO:0043572: plastid fission2.82E-03
86GO:0016556: mRNA modification2.82E-03
87GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center2.82E-03
88GO:0034508: centromere complex assembly2.82E-03
89GO:0070588: calcium ion transmembrane transport2.83E-03
90GO:0009944: polarity specification of adaxial/abaxial axis3.51E-03
91GO:0005992: trehalose biosynthetic process3.51E-03
92GO:0007275: multicellular organism development3.61E-03
93GO:0051764: actin crosslink formation3.81E-03
94GO:0015846: polyamine transport3.81E-03
95GO:0030104: water homeostasis3.81E-03
96GO:0051322: anaphase3.81E-03
97GO:0033500: carbohydrate homeostasis3.81E-03
98GO:2000038: regulation of stomatal complex development3.81E-03
99GO:0046656: folic acid biosynthetic process3.81E-03
100GO:0072488: ammonium transmembrane transport3.81E-03
101GO:0044205: 'de novo' UMP biosynthetic process3.81E-03
102GO:0051567: histone H3-K9 methylation3.81E-03
103GO:0010508: positive regulation of autophagy3.81E-03
104GO:0007020: microtubule nucleation3.81E-03
105GO:0044206: UMP salvage3.81E-03
106GO:0009165: nucleotide biosynthetic process3.81E-03
107GO:0051302: regulation of cell division3.87E-03
108GO:0006418: tRNA aminoacylation for protein translation3.87E-03
109GO:0080167: response to karrikin4.41E-03
110GO:1902183: regulation of shoot apical meristem development4.88E-03
111GO:0016131: brassinosteroid metabolic process4.88E-03
112GO:0010158: abaxial cell fate specification4.88E-03
113GO:0032876: negative regulation of DNA endoreduplication4.88E-03
114GO:0046785: microtubule polymerization4.88E-03
115GO:0010375: stomatal complex patterning4.88E-03
116GO:0032543: mitochondrial translation4.88E-03
117GO:0045038: protein import into chloroplast thylakoid membrane4.88E-03
118GO:0009789: positive regulation of abscisic acid-activated signaling pathway6.01E-03
119GO:0006655: phosphatidylglycerol biosynthetic process6.06E-03
120GO:0006139: nucleobase-containing compound metabolic process6.06E-03
121GO:0016458: gene silencing6.06E-03
122GO:0006206: pyrimidine nucleobase metabolic process6.06E-03
123GO:0050665: hydrogen peroxide biosynthetic process6.06E-03
124GO:0032973: amino acid export6.06E-03
125GO:0018258: protein O-linked glycosylation via hydroxyproline6.06E-03
126GO:0009228: thiamine biosynthetic process6.06E-03
127GO:0010405: arabinogalactan protein metabolic process6.06E-03
128GO:0009451: RNA modification6.10E-03
129GO:0080086: stamen filament development7.32E-03
130GO:0009648: photoperiodism7.32E-03
131GO:2000067: regulation of root morphogenesis7.32E-03
132GO:0017148: negative regulation of translation7.32E-03
133GO:0009942: longitudinal axis specification7.32E-03
134GO:0046654: tetrahydrofolate biosynthetic process7.32E-03
135GO:0030488: tRNA methylation7.32E-03
136GO:1901259: chloroplast rRNA processing7.32E-03
137GO:0009854: oxidative photosynthetic carbon pathway7.32E-03
138GO:0009646: response to absence of light7.55E-03
139GO:0043090: amino acid import8.66E-03
140GO:0006821: chloride transport8.66E-03
141GO:0070370: cellular heat acclimation8.66E-03
142GO:0010050: vegetative phase change8.66E-03
143GO:0048437: floral organ development8.66E-03
144GO:0010444: guard mother cell differentiation8.66E-03
145GO:0006400: tRNA modification8.66E-03
146GO:0030307: positive regulation of cell growth8.66E-03
147GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process8.66E-03
148GO:0010103: stomatal complex morphogenesis8.66E-03
149GO:0006468: protein phosphorylation8.97E-03
150GO:0052543: callose deposition in cell wall1.01E-02
151GO:0001522: pseudouridine synthesis1.01E-02
152GO:0009850: auxin metabolic process1.01E-02
153GO:0009704: de-etiolation1.01E-02
154GO:0032875: regulation of DNA endoreduplication1.01E-02
155GO:2000070: regulation of response to water deprivation1.01E-02
156GO:0070413: trehalose metabolism in response to stress1.01E-02
157GO:0055075: potassium ion homeostasis1.01E-02
158GO:0009231: riboflavin biosynthetic process1.01E-02
159GO:0010252: auxin homeostasis1.05E-02
160GO:0001558: regulation of cell growth1.16E-02
161GO:0009827: plant-type cell wall modification1.16E-02
162GO:0010204: defense response signaling pathway, resistance gene-independent1.16E-02
163GO:0010497: plasmodesmata-mediated intercellular transport1.16E-02
164GO:0042254: ribosome biogenesis1.18E-02
165GO:0051607: defense response to virus1.19E-02
166GO:0009051: pentose-phosphate shunt, oxidative branch1.32E-02
167GO:0080144: amino acid homeostasis1.32E-02
168GO:2000024: regulation of leaf development1.32E-02
169GO:0006098: pentose-phosphate shunt1.32E-02
170GO:0000902: cell morphogenesis1.32E-02
171GO:0042761: very long-chain fatty acid biosynthetic process1.48E-02
172GO:2000280: regulation of root development1.48E-02
173GO:0009638: phototropism1.48E-02
174GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.48E-02
175GO:0031425: chloroplast RNA processing1.48E-02
176GO:0010411: xyloglucan metabolic process1.49E-02
177GO:0009641: shade avoidance1.66E-02
178GO:0006298: mismatch repair1.66E-02
179GO:0006949: syncytium formation1.66E-02
180GO:0006259: DNA metabolic process1.66E-02
181GO:0030422: production of siRNA involved in RNA interference1.66E-02
182GO:0010015: root morphogenesis1.84E-02
183GO:0006265: DNA topological change1.84E-02
184GO:0009089: lysine biosynthetic process via diaminopimelate1.84E-02
185GO:0006816: calcium ion transport1.84E-02
186GO:0009773: photosynthetic electron transport in photosystem I1.84E-02
187GO:1903507: negative regulation of nucleic acid-templated transcription1.84E-02
188GO:0048229: gametophyte development1.84E-02
189GO:0006415: translational termination1.84E-02
190GO:0009790: embryo development1.93E-02
191GO:0016024: CDP-diacylglycerol biosynthetic process2.02E-02
192GO:0045037: protein import into chloroplast stroma2.02E-02
193GO:0010582: floral meristem determinacy2.02E-02
194GO:0010075: regulation of meristem growth2.22E-02
195GO:0006094: gluconeogenesis2.22E-02
196GO:0009767: photosynthetic electron transport chain2.22E-02
197GO:2000012: regulation of auxin polar transport2.22E-02
198GO:0010628: positive regulation of gene expression2.22E-02
199GO:0006006: glucose metabolic process2.22E-02
200GO:0009785: blue light signaling pathway2.22E-02
201GO:0030036: actin cytoskeleton organization2.22E-02
202GO:0050826: response to freezing2.22E-02
203GO:0006839: mitochondrial transport2.39E-02
204GO:0009934: regulation of meristem structural organization2.42E-02
205GO:0010207: photosystem II assembly2.42E-02
206GO:0006541: glutamine metabolic process2.42E-02
207GO:0071732: cellular response to nitric oxide2.62E-02
208GO:0010030: positive regulation of seed germination2.62E-02
209GO:0008283: cell proliferation2.71E-02
210GO:0042546: cell wall biogenesis2.82E-02
211GO:0007166: cell surface receptor signaling pathway2.82E-02
212GO:0006833: water transport2.83E-02
213GO:0010025: wax biosynthetic process2.83E-02
214GO:0008380: RNA splicing2.97E-02
215GO:0071555: cell wall organization3.05E-02
216GO:0009116: nucleoside metabolic process3.05E-02
217GO:0051017: actin filament bundle assembly3.05E-02
218GO:0030150: protein import into mitochondrial matrix3.05E-02
219GO:0006825: copper ion transport3.27E-02
220GO:0043622: cortical microtubule organization3.27E-02
221GO:0009664: plant-type cell wall organization3.40E-02
222GO:0006306: DNA methylation3.50E-02
223GO:0016998: cell wall macromolecule catabolic process3.50E-02
224GO:2000022: regulation of jasmonic acid mediated signaling pathway3.73E-02
225GO:0006730: one-carbon metabolic process3.73E-02
226GO:0031348: negative regulation of defense response3.73E-02
227GO:0051603: proteolysis involved in cellular protein catabolic process3.77E-02
228GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.97E-02
229GO:0010082: regulation of root meristem growth3.97E-02
230GO:0071369: cellular response to ethylene stimulus3.97E-02
231GO:0001944: vasculature development3.97E-02
232GO:0006417: regulation of translation4.03E-02
233GO:0010089: xylem development4.21E-02
234GO:0009306: protein secretion4.21E-02
235GO:0048367: shoot system development4.44E-02
236GO:0016117: carotenoid biosynthetic process4.46E-02
237GO:0048653: anther development4.71E-02
238GO:0042631: cellular response to water deprivation4.71E-02
239GO:0000226: microtubule cytoskeleton organization4.71E-02
240GO:0008033: tRNA processing4.71E-02
241GO:0042335: cuticle development4.71E-02
242GO:0010087: phloem or xylem histogenesis4.71E-02
243GO:0006342: chromatin silencing4.97E-02
244GO:0009741: response to brassinosteroid4.97E-02
245GO:0006662: glycerol ether metabolic process4.97E-02
246GO:0048868: pollen tube development4.97E-02
RankGO TermAdjusted P value
1GO:0019136: deoxynucleoside kinase activity0.00E+00
2GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
3GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
4GO:0019808: polyamine binding0.00E+00
5GO:0004823: leucine-tRNA ligase activity0.00E+00
6GO:0004056: argininosuccinate lyase activity0.00E+00
7GO:0050139: nicotinate-N-glucosyltransferase activity5.51E-04
8GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.51E-04
9GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity5.51E-04
10GO:0004008: copper-exporting ATPase activity5.51E-04
11GO:0004071: aspartate-ammonia ligase activity5.51E-04
12GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.51E-04
13GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity5.51E-04
14GO:0004830: tryptophan-tRNA ligase activity5.51E-04
15GO:0010285: L,L-diaminopimelate aminotransferase activity5.51E-04
16GO:0019843: rRNA binding7.90E-04
17GO:0043621: protein self-association1.06E-03
18GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.19E-03
19GO:0009977: proton motive force dependent protein transmembrane transporter activity1.19E-03
20GO:0003938: IMP dehydrogenase activity1.19E-03
21GO:0102083: 7,8-dihydromonapterin aldolase activity1.19E-03
22GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.19E-03
23GO:0004150: dihydroneopterin aldolase activity1.19E-03
24GO:0003919: FMN adenylyltransferase activity1.19E-03
25GO:0010291: carotene beta-ring hydroxylase activity1.19E-03
26GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.19E-03
27GO:0009672: auxin:proton symporter activity1.27E-03
28GO:0004805: trehalose-phosphatase activity1.48E-03
29GO:0070330: aromatase activity1.95E-03
30GO:0002161: aminoacyl-tRNA editing activity1.95E-03
31GO:0005262: calcium channel activity2.24E-03
32GO:0010329: auxin efflux transmembrane transporter activity2.24E-03
33GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.82E-03
34GO:0001872: (1->3)-beta-D-glucan binding2.82E-03
35GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.82E-03
36GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.82E-03
37GO:0035197: siRNA binding2.82E-03
38GO:0043023: ribosomal large subunit binding2.82E-03
39GO:0004519: endonuclease activity3.02E-03
40GO:0004845: uracil phosphoribosyltransferase activity3.81E-03
41GO:0004345: glucose-6-phosphate dehydrogenase activity3.81E-03
42GO:0043015: gamma-tubulin binding3.81E-03
43GO:0005253: anion channel activity3.81E-03
44GO:0019199: transmembrane receptor protein kinase activity3.81E-03
45GO:0042277: peptide binding3.81E-03
46GO:0008891: glycolate oxidase activity3.81E-03
47GO:0046556: alpha-L-arabinofuranosidase activity3.81E-03
48GO:0018685: alkane 1-monooxygenase activity4.88E-03
49GO:0016773: phosphotransferase activity, alcohol group as acceptor4.88E-03
50GO:0004040: amidase activity4.88E-03
51GO:0004675: transmembrane receptor protein serine/threonine kinase activity5.29E-03
52GO:0003727: single-stranded RNA binding5.54E-03
53GO:0004812: aminoacyl-tRNA ligase activity6.01E-03
54GO:0005247: voltage-gated chloride channel activity6.06E-03
55GO:0030983: mismatched DNA binding6.06E-03
56GO:0004605: phosphatidate cytidylyltransferase activity6.06E-03
57GO:1990714: hydroxyproline O-galactosyltransferase activity6.06E-03
58GO:0004332: fructose-bisphosphate aldolase activity6.06E-03
59GO:0008519: ammonium transmembrane transporter activity6.06E-03
60GO:0008536: Ran GTPase binding7.01E-03
61GO:0008195: phosphatidate phosphatase activity7.32E-03
62GO:0004849: uridine kinase activity7.32E-03
63GO:0003730: mRNA 3'-UTR binding7.32E-03
64GO:0019899: enzyme binding8.66E-03
65GO:0016762: xyloglucan:xyloglucosyl transferase activity8.68E-03
66GO:0004674: protein serine/threonine kinase activity9.39E-03
67GO:0051015: actin filament binding9.91E-03
68GO:0043022: ribosome binding1.01E-02
69GO:0004650: polygalacturonase activity1.06E-02
70GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.16E-02
71GO:0005375: copper ion transmembrane transporter activity1.16E-02
72GO:0003747: translation release factor activity1.32E-02
73GO:0016798: hydrolase activity, acting on glycosyl bonds1.49E-02
74GO:0016829: lyase activity1.75E-02
75GO:0008327: methyl-CpG binding1.84E-02
76GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.91E-02
77GO:0004521: endoribonuclease activity2.02E-02
78GO:0003746: translation elongation factor activity2.10E-02
79GO:0009982: pseudouridine synthase activity2.22E-02
80GO:0004022: alcohol dehydrogenase (NAD) activity2.22E-02
81GO:0004565: beta-galactosidase activity2.22E-02
82GO:0015266: protein channel activity2.22E-02
83GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.22E-02
84GO:0031072: heat shock protein binding2.22E-02
85GO:0004190: aspartic-type endopeptidase activity2.62E-02
86GO:0004185: serine-type carboxypeptidase activity2.71E-02
87GO:0005528: FK506 binding3.05E-02
88GO:0003714: transcription corepressor activity3.05E-02
89GO:0005524: ATP binding3.26E-02
90GO:0005345: purine nucleobase transmembrane transporter activity3.27E-02
91GO:0008408: 3'-5' exonuclease activity3.50E-02
92GO:0004176: ATP-dependent peptidase activity3.50E-02
93GO:0033612: receptor serine/threonine kinase binding3.50E-02
94GO:0003723: RNA binding3.50E-02
95GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.72E-02
96GO:0003690: double-stranded DNA binding3.77E-02
97GO:0003682: chromatin binding4.39E-02
98GO:0047134: protein-disulfide reductase activity4.46E-02
99GO:0001085: RNA polymerase II transcription factor binding4.97E-02
100GO:0004527: exonuclease activity4.97E-02
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Gene type



Gene DE type