Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G11690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0043488: regulation of mRNA stability0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0046460: neutral lipid biosynthetic process0.00E+00
7GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
8GO:0070178: D-serine metabolic process0.00E+00
9GO:0090071: negative regulation of ribosome biogenesis0.00E+00
10GO:0031116: positive regulation of microtubule polymerization0.00E+00
11GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
12GO:0007638: mechanosensory behavior0.00E+00
13GO:1905177: tracheary element differentiation0.00E+00
14GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
15GO:0009069: serine family amino acid metabolic process0.00E+00
16GO:0031222: arabinan catabolic process0.00E+00
17GO:0006429: leucyl-tRNA aminoacylation0.00E+00
18GO:0070979: protein K11-linked ubiquitination0.00E+00
19GO:0009734: auxin-activated signaling pathway1.17E-06
20GO:0009733: response to auxin1.67E-06
21GO:0040008: regulation of growth9.84E-06
22GO:0046620: regulation of organ growth4.61E-05
23GO:0009658: chloroplast organization5.04E-05
24GO:0009657: plastid organization6.43E-05
25GO:0006415: translational termination1.77E-04
26GO:2000012: regulation of auxin polar transport2.60E-04
27GO:0006655: phosphatidylglycerol biosynthetic process4.12E-04
28GO:0042372: phylloquinone biosynthetic process5.47E-04
29GO:0010729: positive regulation of hydrogen peroxide biosynthetic process6.16E-04
30GO:0006419: alanyl-tRNA aminoacylation6.16E-04
31GO:0000476: maturation of 4.5S rRNA6.16E-04
32GO:0000967: rRNA 5'-end processing6.16E-04
33GO:0051418: microtubule nucleation by microtubule organizing center6.16E-04
34GO:2000025: regulation of leaf formation6.16E-04
35GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process6.16E-04
36GO:0070509: calcium ion import6.16E-04
37GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process6.16E-04
38GO:0043266: regulation of potassium ion transport6.16E-04
39GO:0042547: cell wall modification involved in multidimensional cell growth6.16E-04
40GO:0019478: D-amino acid catabolic process6.16E-04
41GO:0042371: vitamin K biosynthetic process6.16E-04
42GO:2000021: regulation of ion homeostasis6.16E-04
43GO:0006436: tryptophanyl-tRNA aminoacylation6.16E-04
44GO:0034080: CENP-A containing nucleosome assembly6.16E-04
45GO:0000066: mitochondrial ornithine transport6.16E-04
46GO:1902458: positive regulation of stomatal opening6.16E-04
47GO:0006747: FAD biosynthetic process6.16E-04
48GO:0048528: post-embryonic root development7.00E-04
49GO:0006353: DNA-templated transcription, termination8.71E-04
50GO:0032544: plastid translation1.06E-03
51GO:0009926: auxin polar transport1.21E-03
52GO:0000373: Group II intron splicing1.26E-03
53GO:0033566: gamma-tubulin complex localization1.32E-03
54GO:1900033: negative regulation of trichome patterning1.32E-03
55GO:0009220: pyrimidine ribonucleotide biosynthetic process1.32E-03
56GO:1903426: regulation of reactive oxygen species biosynthetic process1.32E-03
57GO:0034470: ncRNA processing1.32E-03
58GO:0045036: protein targeting to chloroplast1.75E-03
59GO:0048281: inflorescence morphogenesis2.18E-03
60GO:0006954: inflammatory response2.18E-03
61GO:0031145: anaphase-promoting complex-dependent catabolic process2.18E-03
62GO:0010623: programmed cell death involved in cell development2.18E-03
63GO:0001578: microtubule bundle formation2.18E-03
64GO:0045493: xylan catabolic process2.18E-03
65GO:0006760: folic acid-containing compound metabolic process2.18E-03
66GO:0071398: cellular response to fatty acid2.18E-03
67GO:0007052: mitotic spindle organization2.18E-03
68GO:0016024: CDP-diacylglycerol biosynthetic process2.32E-03
69GO:0071555: cell wall organization2.44E-03
70GO:0005975: carbohydrate metabolic process2.82E-03
71GO:0051639: actin filament network formation3.17E-03
72GO:0010239: chloroplast mRNA processing3.17E-03
73GO:0010306: rhamnogalacturonan II biosynthetic process3.17E-03
74GO:0009226: nucleotide-sugar biosynthetic process3.17E-03
75GO:0044211: CTP salvage3.17E-03
76GO:0090307: mitotic spindle assembly3.17E-03
77GO:0032981: mitochondrial respiratory chain complex I assembly3.17E-03
78GO:2000904: regulation of starch metabolic process3.17E-03
79GO:0010148: transpiration3.17E-03
80GO:0043572: plastid fission3.17E-03
81GO:0016556: mRNA modification3.17E-03
82GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center3.17E-03
83GO:0034508: centromere complex assembly3.17E-03
84GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.17E-03
85GO:0007231: osmosensory signaling pathway3.17E-03
86GO:0030071: regulation of mitotic metaphase/anaphase transition3.17E-03
87GO:0070588: calcium ion transmembrane transport3.35E-03
88GO:0051764: actin crosslink formation4.28E-03
89GO:0051322: anaphase4.28E-03
90GO:0033500: carbohydrate homeostasis4.28E-03
91GO:0046656: folic acid biosynthetic process4.28E-03
92GO:0022622: root system development4.28E-03
93GO:0044205: 'de novo' UMP biosynthetic process4.28E-03
94GO:0010508: positive regulation of autophagy4.28E-03
95GO:0007020: microtubule nucleation4.28E-03
96GO:0044206: UMP salvage4.28E-03
97GO:0048629: trichome patterning4.28E-03
98GO:0006418: tRNA aminoacylation for protein translation4.58E-03
99GO:0010158: abaxial cell fate specification5.49E-03
100GO:0032876: negative regulation of DNA endoreduplication5.49E-03
101GO:0046785: microtubule polymerization5.49E-03
102GO:0032543: mitochondrial translation5.49E-03
103GO:0010236: plastoquinone biosynthetic process5.49E-03
104GO:0045038: protein import into chloroplast thylakoid membrane5.49E-03
105GO:0000278: mitotic cell cycle5.49E-03
106GO:0016123: xanthophyll biosynthetic process5.49E-03
107GO:0006730: one-carbon metabolic process5.52E-03
108GO:0016554: cytidine to uridine editing6.81E-03
109GO:0006206: pyrimidine nucleobase metabolic process6.81E-03
110GO:0032973: amino acid export6.81E-03
111GO:0018258: protein O-linked glycosylation via hydroxyproline6.81E-03
112GO:0050665: hydrogen peroxide biosynthetic process6.81E-03
113GO:0009228: thiamine biosynthetic process6.81E-03
114GO:0006563: L-serine metabolic process6.81E-03
115GO:0010405: arabinogalactan protein metabolic process6.81E-03
116GO:0010087: phloem or xylem histogenesis7.70E-03
117GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity8.24E-03
118GO:0017148: negative regulation of translation8.24E-03
119GO:0009942: longitudinal axis specification8.24E-03
120GO:0034389: lipid particle organization8.24E-03
121GO:0046654: tetrahydrofolate biosynthetic process8.24E-03
122GO:0030488: tRNA methylation8.24E-03
123GO:1901259: chloroplast rRNA processing8.24E-03
124GO:0009854: oxidative photosynthetic carbon pathway8.24E-03
125GO:0080086: stamen filament development8.24E-03
126GO:0009648: photoperiodism8.24E-03
127GO:0009958: positive gravitropism8.31E-03
128GO:0009772: photosynthetic electron transport in photosystem II9.76E-03
129GO:0043090: amino acid import9.76E-03
130GO:0070370: cellular heat acclimation9.76E-03
131GO:0010050: vegetative phase change9.76E-03
132GO:0010444: guard mother cell differentiation9.76E-03
133GO:0006400: tRNA modification9.76E-03
134GO:0030307: positive regulation of cell growth9.76E-03
135GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process9.76E-03
136GO:0010103: stomatal complex morphogenesis9.76E-03
137GO:0032880: regulation of protein localization9.76E-03
138GO:0032502: developmental process1.10E-02
139GO:0009850: auxin metabolic process1.14E-02
140GO:0010078: maintenance of root meristem identity1.14E-02
141GO:0009704: de-etiolation1.14E-02
142GO:0032875: regulation of DNA endoreduplication1.14E-02
143GO:0042255: ribosome assembly1.14E-02
144GO:2000070: regulation of response to water deprivation1.14E-02
145GO:0070413: trehalose metabolism in response to stress1.14E-02
146GO:0000105: histidine biosynthetic process1.14E-02
147GO:0009231: riboflavin biosynthetic process1.14E-02
148GO:1901657: glycosyl compound metabolic process1.17E-02
149GO:0001558: regulation of cell growth1.31E-02
150GO:0009827: plant-type cell wall modification1.31E-02
151GO:0010204: defense response signaling pathway, resistance gene-independent1.31E-02
152GO:0007389: pattern specification process1.31E-02
153GO:0043562: cellular response to nitrogen levels1.31E-02
154GO:0007275: multicellular organism development1.35E-02
155GO:0080144: amino acid homeostasis1.49E-02
156GO:0006098: pentose-phosphate shunt1.49E-02
157GO:0019432: triglyceride biosynthetic process1.49E-02
158GO:0000902: cell morphogenesis1.49E-02
159GO:0042761: very long-chain fatty acid biosynthetic process1.67E-02
160GO:0009638: phototropism1.67E-02
161GO:0007346: regulation of mitotic cell cycle1.67E-02
162GO:1900865: chloroplast RNA modification1.67E-02
163GO:0071577: zinc II ion transmembrane transport1.67E-02
164GO:0009627: systemic acquired resistance1.67E-02
165GO:0010411: xyloglucan metabolic process1.77E-02
166GO:0006535: cysteine biosynthetic process from serine1.87E-02
167GO:0009641: shade avoidance1.87E-02
168GO:0006949: syncytium formation1.87E-02
169GO:0006259: DNA metabolic process1.87E-02
170GO:0006265: DNA topological change2.07E-02
171GO:0006816: calcium ion transport2.07E-02
172GO:0009773: photosynthetic electron transport in photosystem I2.07E-02
173GO:1903507: negative regulation of nucleic acid-templated transcription2.07E-02
174GO:0009684: indoleacetic acid biosynthetic process2.07E-02
175GO:0010015: root morphogenesis2.07E-02
176GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.15E-02
177GO:0048527: lateral root development2.27E-02
178GO:0045037: protein import into chloroplast stroma2.28E-02
179GO:0010582: floral meristem determinacy2.28E-02
180GO:0016310: phosphorylation2.30E-02
181GO:0010588: cotyledon vascular tissue pattern formation2.50E-02
182GO:0010628: positive regulation of gene expression2.50E-02
183GO:0009785: blue light signaling pathway2.50E-02
184GO:0050826: response to freezing2.50E-02
185GO:0006094: gluconeogenesis2.50E-02
186GO:0048467: gynoecium development2.73E-02
187GO:0010207: photosystem II assembly2.73E-02
188GO:0010020: chloroplast fission2.73E-02
189GO:0006839: mitochondrial transport2.83E-02
190GO:0045490: pectin catabolic process2.94E-02
191GO:0071732: cellular response to nitric oxide2.96E-02
192GO:0000162: tryptophan biosynthetic process3.20E-02
193GO:0010025: wax biosynthetic process3.20E-02
194GO:0042023: DNA endoreduplication3.20E-02
195GO:0009833: plant-type primary cell wall biogenesis3.20E-02
196GO:0006071: glycerol metabolic process3.20E-02
197GO:0006833: water transport3.20E-02
198GO:0008283: cell proliferation3.21E-02
199GO:0009116: nucleoside metabolic process3.44E-02
200GO:0009944: polarity specification of adaxial/abaxial axis3.44E-02
201GO:0051017: actin filament bundle assembly3.44E-02
202GO:0007010: cytoskeleton organization3.44E-02
203GO:0005992: trehalose biosynthetic process3.44E-02
204GO:0019344: cysteine biosynthetic process3.44E-02
205GO:0007166: cell surface receptor signaling pathway3.48E-02
206GO:0009965: leaf morphogenesis3.60E-02
207GO:0008380: RNA splicing3.66E-02
208GO:0043622: cortical microtubule organization3.69E-02
209GO:0051302: regulation of cell division3.69E-02
210GO:0016998: cell wall macromolecule catabolic process3.95E-02
211GO:0009664: plant-type cell wall organization4.02E-02
212GO:0009814: defense response, incompatible interaction4.21E-02
213GO:2000022: regulation of jasmonic acid mediated signaling pathway4.21E-02
214GO:0031348: negative regulation of defense response4.21E-02
215GO:0051603: proteolysis involved in cellular protein catabolic process4.46E-02
216GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.48E-02
217GO:0010082: regulation of root meristem growth4.48E-02
218GO:0009693: ethylene biosynthetic process4.48E-02
219GO:0009686: gibberellin biosynthetic process4.48E-02
220GO:0071369: cellular response to ethylene stimulus4.48E-02
221GO:0001944: vasculature development4.48E-02
222GO:0055085: transmembrane transport4.60E-02
223GO:0045492: xylan biosynthetic process4.75E-02
224GO:0009306: protein secretion4.75E-02
225GO:0010089: xylem development4.75E-02
226GO:0010214: seed coat development4.75E-02
RankGO TermAdjusted P value
1GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
2GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
3GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
4GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
5GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
6GO:0004823: leucine-tRNA ligase activity0.00E+00
7GO:0030378: serine racemase activity0.00E+00
8GO:0003941: L-serine ammonia-lyase activity0.00E+00
9GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
10GO:0008721: D-serine ammonia-lyase activity0.00E+00
11GO:0004056: argininosuccinate lyase activity0.00E+00
12GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
13GO:0003747: translation release factor activity8.64E-05
14GO:0016149: translation release factor activity, codon specific1.14E-04
15GO:0046556: alpha-L-arabinofuranosidase activity1.95E-04
16GO:0051777: ent-kaurenoate oxidase activity6.16E-04
17GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity6.16E-04
18GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity6.16E-04
19GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.16E-04
20GO:0004813: alanine-tRNA ligase activity6.16E-04
21GO:0005290: L-histidine transmembrane transporter activity6.16E-04
22GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.16E-04
23GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.16E-04
24GO:0004830: tryptophan-tRNA ligase activity6.16E-04
25GO:0050139: nicotinate-N-glucosyltransferase activity6.16E-04
26GO:0030570: pectate lyase activity7.73E-04
27GO:0016829: lyase activity1.21E-03
28GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.32E-03
29GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity1.32E-03
30GO:0004150: dihydroneopterin aldolase activity1.32E-03
31GO:0003919: FMN adenylyltransferase activity1.32E-03
32GO:0000064: L-ornithine transmembrane transporter activity1.32E-03
33GO:0050017: L-3-cyanoalanine synthase activity1.32E-03
34GO:0010291: carotene beta-ring hydroxylase activity1.32E-03
35GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.32E-03
36GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.32E-03
37GO:0009977: proton motive force dependent protein transmembrane transporter activity1.32E-03
38GO:0102083: 7,8-dihydromonapterin aldolase activity1.32E-03
39GO:0070330: aromatase activity2.18E-03
40GO:0002161: aminoacyl-tRNA editing activity2.18E-03
41GO:0004557: alpha-galactosidase activity2.18E-03
42GO:0052692: raffinose alpha-galactosidase activity2.18E-03
43GO:0070180: large ribosomal subunit rRNA binding2.18E-03
44GO:0005262: calcium channel activity2.64E-03
45GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity3.17E-03
46GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity3.17E-03
47GO:0015181: arginine transmembrane transporter activity3.17E-03
48GO:0043023: ribosomal large subunit binding3.17E-03
49GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity3.17E-03
50GO:0001872: (1->3)-beta-D-glucan binding3.17E-03
51GO:0015189: L-lysine transmembrane transporter activity3.17E-03
52GO:0031418: L-ascorbic acid binding4.15E-03
53GO:0016788: hydrolase activity, acting on ester bonds4.19E-03
54GO:0004045: aminoacyl-tRNA hydrolase activity4.28E-03
55GO:0009044: xylan 1,4-beta-xylosidase activity4.28E-03
56GO:0043015: gamma-tubulin binding4.28E-03
57GO:0019199: transmembrane receptor protein kinase activity4.28E-03
58GO:0042277: peptide binding4.28E-03
59GO:0008891: glycolate oxidase activity4.28E-03
60GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity4.28E-03
61GO:0004659: prenyltransferase activity4.28E-03
62GO:0004845: uracil phosphoribosyltransferase activity4.28E-03
63GO:0004176: ATP-dependent peptidase activity5.04E-03
64GO:0016846: carbon-sulfur lyase activity5.49E-03
65GO:0018685: alkane 1-monooxygenase activity5.49E-03
66GO:0004040: amidase activity5.49E-03
67GO:0004332: fructose-bisphosphate aldolase activity6.81E-03
68GO:0016208: AMP binding6.81E-03
69GO:0042578: phosphoric ester hydrolase activity6.81E-03
70GO:0004605: phosphatidate cytidylyltransferase activity6.81E-03
71GO:0080030: methyl indole-3-acetate esterase activity6.81E-03
72GO:1990714: hydroxyproline O-galactosyltransferase activity6.81E-03
73GO:0043621: protein self-association7.08E-03
74GO:0004812: aminoacyl-tRNA ligase activity7.12E-03
75GO:0008195: phosphatidate phosphatase activity8.24E-03
76GO:0004849: uridine kinase activity8.24E-03
77GO:0003730: mRNA 3'-UTR binding8.24E-03
78GO:0004144: diacylglycerol O-acyltransferase activity8.24E-03
79GO:0004656: procollagen-proline 4-dioxygenase activity8.24E-03
80GO:0004723: calcium-dependent protein serine/threonine phosphatase activity8.24E-03
81GO:0004124: cysteine synthase activity8.24E-03
82GO:0008536: Ran GTPase binding8.31E-03
83GO:0019899: enzyme binding9.76E-03
84GO:0043022: ribosome binding1.14E-02
85GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.31E-02
86GO:0016597: amino acid binding1.41E-02
87GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.49E-02
88GO:0009672: auxin:proton symporter activity1.67E-02
89GO:0102483: scopolin beta-glucosidase activity1.77E-02
90GO:0004805: trehalose-phosphatase activity1.87E-02
91GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.88E-02
92GO:0008327: methyl-CpG binding2.07E-02
93GO:0047372: acylglycerol lipase activity2.07E-02
94GO:0000049: tRNA binding2.28E-02
95GO:0004022: alcohol dehydrogenase (NAD) activity2.50E-02
96GO:0004565: beta-galactosidase activity2.50E-02
97GO:0010329: auxin efflux transmembrane transporter activity2.50E-02
98GO:0004089: carbonate dehydratase activity2.50E-02
99GO:0031072: heat shock protein binding2.50E-02
100GO:0009982: pseudouridine synthase activity2.50E-02
101GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.69E-02
102GO:0008422: beta-glucosidase activity2.72E-02
103GO:0008083: growth factor activity2.73E-02
104GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.73E-02
105GO:0042393: histone binding2.83E-02
106GO:0008017: microtubule binding3.11E-02
107GO:0004185: serine-type carboxypeptidase activity3.21E-02
108GO:0016301: kinase activity3.30E-02
109GO:0043130: ubiquitin binding3.44E-02
110GO:0005528: FK506 binding3.44E-02
111GO:0003714: transcription corepressor activity3.44E-02
112GO:0005385: zinc ion transmembrane transporter activity3.44E-02
113GO:0008324: cation transmembrane transporter activity3.69E-02
114GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.21E-02
115GO:0016760: cellulose synthase (UDP-forming) activity4.48E-02
116GO:0003727: single-stranded RNA binding4.75E-02
117GO:0015171: amino acid transmembrane transporter activity4.77E-02
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Gene type



Gene DE type