Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G11610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051924: regulation of calcium ion transport0.00E+00
2GO:0007037: vacuolar phosphate transport0.00E+00
3GO:0031116: positive regulation of microtubule polymerization0.00E+00
4GO:0010068: protoderm histogenesis0.00E+00
5GO:0031129: inductive cell-cell signaling0.00E+00
6GO:2001294: malonyl-CoA catabolic process0.00E+00
7GO:0010412: mannan metabolic process0.00E+00
8GO:0015843: methylammonium transport0.00E+00
9GO:0097275: cellular ammonia homeostasis0.00E+00
10GO:0070979: protein K11-linked ubiquitination0.00E+00
11GO:0043488: regulation of mRNA stability0.00E+00
12GO:0061157: mRNA destabilization0.00E+00
13GO:0090706: specification of plant organ position0.00E+00
14GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
15GO:0046460: neutral lipid biosynthetic process0.00E+00
16GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
17GO:0006021: inositol biosynthetic process1.52E-04
18GO:0009733: response to auxin2.07E-04
19GO:0045038: protein import into chloroplast thylakoid membrane2.32E-04
20GO:1902183: regulation of shoot apical meristem development2.32E-04
21GO:0010158: abaxial cell fate specification2.32E-04
22GO:0040008: regulation of growth2.45E-04
23GO:0071028: nuclear mRNA surveillance5.29E-04
24GO:0043266: regulation of potassium ion transport5.29E-04
25GO:0006659: phosphatidylserine biosynthetic process5.29E-04
26GO:0043087: regulation of GTPase activity5.29E-04
27GO:2000021: regulation of ion homeostasis5.29E-04
28GO:0006264: mitochondrial DNA replication5.29E-04
29GO:0033259: plastid DNA replication5.29E-04
30GO:1902458: positive regulation of stomatal opening5.29E-04
31GO:0006177: GMP biosynthetic process5.29E-04
32GO:0010450: inflorescence meristem growth5.29E-04
33GO:0051171: regulation of nitrogen compound metabolic process5.29E-04
34GO:0010482: regulation of epidermal cell division5.29E-04
35GO:0009658: chloroplast organization6.76E-04
36GO:0007155: cell adhesion6.96E-04
37GO:0010182: sugar mediated signaling pathway8.66E-04
38GO:2000024: regulation of leaf development1.01E-03
39GO:0000373: Group II intron splicing1.01E-03
40GO:1900871: chloroplast mRNA modification1.14E-03
41GO:2000039: regulation of trichome morphogenesis1.14E-03
42GO:0007154: cell communication1.14E-03
43GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation1.14E-03
44GO:1900033: negative regulation of trichome patterning1.14E-03
45GO:0042814: monopolar cell growth1.14E-03
46GO:0031648: protein destabilization1.14E-03
47GO:0031125: rRNA 3'-end processing1.14E-03
48GO:1903426: regulation of reactive oxygen species biosynthetic process1.14E-03
49GO:0006568: tryptophan metabolic process1.14E-03
50GO:0015804: neutral amino acid transport1.14E-03
51GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.14E-03
52GO:0034475: U4 snRNA 3'-end processing1.14E-03
53GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole1.14E-03
54GO:0010115: regulation of abscisic acid biosynthetic process1.14E-03
55GO:1900865: chloroplast RNA modification1.19E-03
56GO:0007166: cell surface receptor signaling pathway1.57E-03
57GO:0031145: anaphase-promoting complex-dependent catabolic process1.87E-03
58GO:0045604: regulation of epidermal cell differentiation1.87E-03
59GO:0080055: low-affinity nitrate transport1.87E-03
60GO:0006753: nucleoside phosphate metabolic process1.87E-03
61GO:0001578: microtubule bundle formation1.87E-03
62GO:0045493: xylan catabolic process1.87E-03
63GO:0045165: cell fate commitment1.87E-03
64GO:0016075: rRNA catabolic process1.87E-03
65GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.87E-03
66GO:0051127: positive regulation of actin nucleation1.87E-03
67GO:0019419: sulfate reduction1.87E-03
68GO:0010255: glucose mediated signaling pathway2.70E-03
69GO:0015696: ammonium transport2.70E-03
70GO:0048530: fruit morphogenesis2.70E-03
71GO:0006164: purine nucleotide biosynthetic process2.70E-03
72GO:0006168: adenine salvage2.70E-03
73GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.70E-03
74GO:0006166: purine ribonucleoside salvage2.70E-03
75GO:0030071: regulation of mitotic metaphase/anaphase transition2.70E-03
76GO:0051639: actin filament network formation2.70E-03
77GO:0048645: animal organ formation2.70E-03
78GO:0010187: negative regulation of seed germination3.29E-03
79GO:0005992: trehalose biosynthetic process3.29E-03
80GO:0019344: cysteine biosynthetic process3.29E-03
81GO:0009944: polarity specification of adaxial/abaxial axis3.29E-03
82GO:0007020: microtubule nucleation3.64E-03
83GO:0009165: nucleotide biosynthetic process3.64E-03
84GO:0048629: trichome patterning3.64E-03
85GO:0051764: actin crosslink formation3.64E-03
86GO:0051322: anaphase3.64E-03
87GO:0046355: mannan catabolic process3.64E-03
88GO:0072488: ammonium transmembrane transport3.64E-03
89GO:2000022: regulation of jasmonic acid mediated signaling pathway4.38E-03
90GO:0009734: auxin-activated signaling pathway4.43E-03
91GO:0044209: AMP salvage4.67E-03
92GO:0032876: negative regulation of DNA endoreduplication4.67E-03
93GO:0046785: microtubule polymerization4.67E-03
94GO:0009789: positive regulation of abscisic acid-activated signaling pathway5.64E-03
95GO:0009920: cell plate formation involved in plant-type cell wall biogenesis5.79E-03
96GO:0009117: nucleotide metabolic process5.79E-03
97GO:0000741: karyogamy5.79E-03
98GO:0046855: inositol phosphate dephosphorylation5.79E-03
99GO:0006561: proline biosynthetic process5.79E-03
100GO:0010264: myo-inositol hexakisphosphate biosynthetic process5.79E-03
101GO:0009959: negative gravitropism5.79E-03
102GO:0006139: nucleobase-containing compound metabolic process5.79E-03
103GO:0016554: cytidine to uridine editing5.79E-03
104GO:0010087: phloem or xylem histogenesis6.09E-03
105GO:0010154: fruit development6.57E-03
106GO:0009585: red, far-red light phototransduction6.96E-03
107GO:0009082: branched-chain amino acid biosynthetic process6.99E-03
108GO:0034389: lipid particle organization6.99E-03
109GO:0048280: vesicle fusion with Golgi apparatus6.99E-03
110GO:2000033: regulation of seed dormancy process6.99E-03
111GO:0009099: valine biosynthetic process6.99E-03
112GO:0048444: floral organ morphogenesis6.99E-03
113GO:0080086: stamen filament development6.99E-03
114GO:0042372: phylloquinone biosynthetic process6.99E-03
115GO:0015937: coenzyme A biosynthetic process8.28E-03
116GO:0010196: nonphotochemical quenching8.28E-03
117GO:0010161: red light signaling pathway8.28E-03
118GO:0009395: phospholipid catabolic process8.28E-03
119GO:0048528: post-embryonic root development8.28E-03
120GO:0010583: response to cyclopentenone8.69E-03
121GO:0048367: shoot system development8.99E-03
122GO:0010078: maintenance of root meristem identity9.64E-03
123GO:0042255: ribosome assembly9.64E-03
124GO:0046620: regulation of organ growth9.64E-03
125GO:0006353: DNA-templated transcription, termination9.64E-03
126GO:0009704: de-etiolation9.64E-03
127GO:0032875: regulation of DNA endoreduplication9.64E-03
128GO:0070413: trehalose metabolism in response to stress9.64E-03
129GO:2000070: regulation of response to water deprivation9.64E-03
130GO:0006402: mRNA catabolic process9.64E-03
131GO:0009740: gibberellic acid mediated signaling pathway1.01E-02
132GO:0009097: isoleucine biosynthetic process1.11E-02
133GO:0010100: negative regulation of photomorphogenesis1.11E-02
134GO:0006997: nucleus organization1.11E-02
135GO:0043562: cellular response to nitrogen levels1.11E-02
136GO:0010093: specification of floral organ identity1.11E-02
137GO:0010099: regulation of photomorphogenesis1.11E-02
138GO:0006002: fructose 6-phosphate metabolic process1.11E-02
139GO:0019432: triglyceride biosynthetic process1.26E-02
140GO:0006783: heme biosynthetic process1.26E-02
141GO:0006189: 'de novo' IMP biosynthetic process1.26E-02
142GO:0051865: protein autoubiquitination1.26E-02
143GO:0009051: pentose-phosphate shunt, oxidative branch1.26E-02
144GO:0010206: photosystem II repair1.26E-02
145GO:0009627: systemic acquired resistance1.32E-02
146GO:0048354: mucilage biosynthetic process involved in seed coat development1.42E-02
147GO:0010380: regulation of chlorophyll biosynthetic process1.42E-02
148GO:0071577: zinc II ion transmembrane transport1.42E-02
149GO:0009638: phototropism1.42E-02
150GO:0042761: very long-chain fatty acid biosynthetic process1.42E-02
151GO:0009098: leucine biosynthetic process1.42E-02
152GO:0010018: far-red light signaling pathway1.42E-02
153GO:0006468: protein phosphorylation1.46E-02
154GO:0006535: cysteine biosynthetic process from serine1.58E-02
155GO:0000103: sulfate assimilation1.58E-02
156GO:0009688: abscisic acid biosynthetic process1.58E-02
157GO:0045036: protein targeting to chloroplast1.58E-02
158GO:0006949: syncytium formation1.58E-02
159GO:0010192: mucilage biosynthetic process1.58E-02
160GO:0009299: mRNA transcription1.58E-02
161GO:0010162: seed dormancy process1.58E-02
162GO:0006896: Golgi to vacuole transport1.58E-02
163GO:0009773: photosynthetic electron transport in photosystem I1.75E-02
164GO:1903507: negative regulation of nucleic acid-templated transcription1.75E-02
165GO:0006415: translational termination1.75E-02
166GO:0009750: response to fructose1.75E-02
167GO:0009684: indoleacetic acid biosynthetic process1.75E-02
168GO:0007275: multicellular organism development1.81E-02
169GO:0006865: amino acid transport1.88E-02
170GO:0045037: protein import into chloroplast stroma1.93E-02
171GO:0006790: sulfur compound metabolic process1.93E-02
172GO:0010628: positive regulation of gene expression2.12E-02
173GO:0006006: glucose metabolic process2.12E-02
174GO:0030036: actin cytoskeleton organization2.12E-02
175GO:0009725: response to hormone2.12E-02
176GO:0010588: cotyledon vascular tissue pattern formation2.12E-02
177GO:0009933: meristem structural organization2.31E-02
178GO:0048467: gynoecium development2.31E-02
179GO:0006541: glutamine metabolic process2.31E-02
180GO:0016042: lipid catabolic process2.47E-02
181GO:0019853: L-ascorbic acid biosynthetic process2.50E-02
182GO:0090351: seedling development2.50E-02
183GO:0010030: positive regulation of seed germination2.50E-02
184GO:0046854: phosphatidylinositol phosphorylation2.50E-02
185GO:0009825: multidimensional cell growth2.50E-02
186GO:0008283: cell proliferation2.54E-02
187GO:0042753: positive regulation of circadian rhythm2.70E-02
188GO:0009833: plant-type primary cell wall biogenesis2.70E-02
189GO:0071555: cell wall organization2.70E-02
190GO:0006071: glycerol metabolic process2.70E-02
191GO:0000162: tryptophan biosynthetic process2.70E-02
192GO:0010025: wax biosynthetic process2.70E-02
193GO:0009965: leaf morphogenesis2.85E-02
194GO:0000027: ribosomal large subunit assembly2.91E-02
195GO:0007010: cytoskeleton organization2.91E-02
196GO:0051017: actin filament bundle assembly2.91E-02
197GO:0080147: root hair cell development2.91E-02
198GO:0043622: cortical microtubule organization3.12E-02
199GO:0003333: amino acid transmembrane transport3.34E-02
200GO:0035428: hexose transmembrane transport3.56E-02
201GO:0006730: one-carbon metabolic process3.56E-02
202GO:0031348: negative regulation of defense response3.56E-02
203GO:0009686: gibberellin biosynthetic process3.79E-02
204GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.79E-02
205GO:0009306: protein secretion4.02E-02
206GO:0010214: seed coat development4.02E-02
207GO:0010091: trichome branching4.02E-02
208GO:0042147: retrograde transport, endosome to Golgi4.26E-02
209GO:0042335: cuticle development4.50E-02
210GO:0000271: polysaccharide biosynthetic process4.50E-02
211GO:0080022: primary root development4.50E-02
212GO:0008033: tRNA processing4.50E-02
213GO:0042631: cellular response to water deprivation4.50E-02
214GO:0000226: microtubule cytoskeleton organization4.50E-02
215GO:0045489: pectin biosynthetic process4.75E-02
216GO:0010197: polar nucleus fusion4.75E-02
217GO:0046323: glucose import4.75E-02
218GO:0008360: regulation of cell shape4.75E-02
219GO:0009958: positive gravitropism4.75E-02
220GO:0009624: response to nematode4.84E-02
221GO:0007018: microtubule-based movement4.99E-02
RankGO TermAdjusted P value
1GO:0010301: xanthoxin dehydrogenase activity0.00E+00
2GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
3GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
4GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
5GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
6GO:1990534: thermospermine oxidase activity0.00E+00
7GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
8GO:0019136: deoxynucleoside kinase activity0.00E+00
9GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
10GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.32E-04
11GO:0010313: phytochrome binding5.29E-04
12GO:0010347: L-galactose-1-phosphate phosphatase activity5.29E-04
13GO:0050139: nicotinate-N-glucosyltransferase activity5.29E-04
14GO:0004425: indole-3-glycerol-phosphate synthase activity5.29E-04
15GO:0010945: CoA pyrophosphatase activity5.29E-04
16GO:0016788: hydrolase activity, acting on ester bonds7.01E-04
17GO:0008934: inositol monophosphate 1-phosphatase activity1.14E-03
18GO:0052833: inositol monophosphate 4-phosphatase activity1.14E-03
19GO:0004512: inositol-3-phosphate synthase activity1.14E-03
20GO:0015172: acidic amino acid transmembrane transporter activity1.14E-03
21GO:0050017: L-3-cyanoalanine synthase activity1.14E-03
22GO:0017118: lipoyltransferase activity1.14E-03
23GO:0043425: bHLH transcription factor binding1.14E-03
24GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.14E-03
25GO:0009977: proton motive force dependent protein transmembrane transporter activity1.14E-03
26GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.14E-03
27GO:0003938: IMP dehydrogenase activity1.14E-03
28GO:0052832: inositol monophosphate 3-phosphatase activity1.14E-03
29GO:0009973: adenylyl-sulfate reductase activity1.14E-03
30GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.14E-03
31GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.14E-03
32GO:0004805: trehalose-phosphatase activity1.39E-03
33GO:0003913: DNA photolyase activity1.87E-03
34GO:0004148: dihydrolipoyl dehydrogenase activity1.87E-03
35GO:0004557: alpha-galactosidase activity1.87E-03
36GO:0004049: anthranilate synthase activity1.87E-03
37GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.87E-03
38GO:0052692: raffinose alpha-galactosidase activity1.87E-03
39GO:0080054: low-affinity nitrate transmembrane transporter activity1.87E-03
40GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity2.70E-03
41GO:0052656: L-isoleucine transaminase activity2.70E-03
42GO:0052654: L-leucine transaminase activity2.70E-03
43GO:0052655: L-valine transaminase activity2.70E-03
44GO:0000254: C-4 methylsterol oxidase activity2.70E-03
45GO:0035529: NADH pyrophosphatase activity2.70E-03
46GO:0015175: neutral amino acid transmembrane transporter activity2.70E-03
47GO:0003999: adenine phosphoribosyltransferase activity2.70E-03
48GO:0004084: branched-chain-amino-acid transaminase activity3.64E-03
49GO:0046556: alpha-L-arabinofuranosidase activity3.64E-03
50GO:0004345: glucose-6-phosphate dehydrogenase activity3.64E-03
51GO:0008409: 5'-3' exonuclease activity3.64E-03
52GO:0016985: mannan endo-1,4-beta-mannosidase activity3.64E-03
53GO:0080032: methyl jasmonate esterase activity3.64E-03
54GO:0009044: xylan 1,4-beta-xylosidase activity3.64E-03
55GO:0016773: phosphotransferase activity, alcohol group as acceptor4.67E-03
56GO:0016846: carbon-sulfur lyase activity4.67E-03
57GO:0052689: carboxylic ester hydrolase activity4.69E-03
58GO:0030570: pectate lyase activity4.77E-03
59GO:0003727: single-stranded RNA binding5.20E-03
60GO:0008017: microtubule binding5.72E-03
61GO:0016208: AMP binding5.79E-03
62GO:0016462: pyrophosphatase activity5.79E-03
63GO:0042578: phosphoric ester hydrolase activity5.79E-03
64GO:0008519: ammonium transmembrane transporter activity5.79E-03
65GO:0004709: MAP kinase kinase kinase activity5.79E-03
66GO:0000210: NAD+ diphosphatase activity5.79E-03
67GO:0016832: aldehyde-lyase activity6.99E-03
68GO:0003730: mRNA 3'-UTR binding6.99E-03
69GO:0004144: diacylglycerol O-acyltransferase activity6.99E-03
70GO:0009927: histidine phosphotransfer kinase activity6.99E-03
71GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.99E-03
72GO:0004124: cysteine synthase activity6.99E-03
73GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.99E-03
74GO:0042802: identical protein binding7.69E-03
75GO:0003872: 6-phosphofructokinase activity8.28E-03
76GO:0043022: ribosome binding9.64E-03
77GO:0003747: translation release factor activity1.26E-02
78GO:0030247: polysaccharide binding1.39E-02
79GO:0004713: protein tyrosine kinase activity1.58E-02
80GO:0016829: lyase activity1.61E-02
81GO:0008794: arsenate reductase (glutaredoxin) activity1.75E-02
82GO:0004022: alcohol dehydrogenase (NAD) activity2.12E-02
83GO:0004089: carbonate dehydratase activity2.12E-02
84GO:0000175: 3'-5'-exoribonuclease activity2.12E-02
85GO:0008131: primary amine oxidase activity2.31E-02
86GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.31E-02
87GO:0016301: kinase activity2.60E-02
88GO:0003887: DNA-directed DNA polymerase activity2.70E-02
89GO:0035091: phosphatidylinositol binding2.75E-02
90GO:0003714: transcription corepressor activity2.91E-02
91GO:0005385: zinc ion transmembrane transporter activity2.91E-02
92GO:0005528: FK506 binding2.91E-02
93GO:0008324: cation transmembrane transporter activity3.12E-02
94GO:0051087: chaperone binding3.12E-02
95GO:0004176: ATP-dependent peptidase activity3.34E-02
96GO:0019706: protein-cysteine S-palmitoyltransferase activity3.34E-02
97GO:0008408: 3'-5' exonuclease activity3.34E-02
98GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.56E-02
99GO:0015171: amino acid transmembrane transporter activity3.78E-02
100GO:0003777: microtubule motor activity3.78E-02
101GO:0016760: cellulose synthase (UDP-forming) activity3.79E-02
102GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.17E-02
103GO:0008536: Ran GTPase binding4.75E-02
104GO:0001085: RNA polymerase II transcription factor binding4.75E-02
105GO:0010181: FMN binding4.99E-02
106GO:0005355: glucose transmembrane transporter activity4.99E-02
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Gene type



Gene DE type